National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G I K L M N P R S T V Y
*     2                                  
-     228                                  
?                                        
A     12                                  
C     9                                  
D     3                                  
E     6                                  
F     15                                  
G     3                                  
I     9                                  
K     6                                  
L     43                                  
M     3                                  
N     15                                  
P     6                                  
R     9                                  
S     24                                  
T     12                                  
V     39                                  
Y     12                                  

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Moldova 26245 A 9 9
1 Moldova 26246 T 9 9
2 Moldova 26247 G 9 9
3 Moldova 26248 T 9 9
4 Moldova 26249 A 9 9
5 Moldova 26250 C 9 9
6 Moldova 26251 T 9 9
7 Moldova 26252 C 9 9
8 Moldova 26253 A 9 9
9 Moldova 26254 T 9 9
10 Moldova 26255 T 9 9
11 Moldova 26256 C 9 9
12 Moldova 26257 G 9 9
13 Moldova 26258 T 9 9
14 Moldova 26259 T 9 9
15 Moldova 26260 T 9 9
16 Moldova 26261 C 9 9
17 Moldova 26262 G 9 9
18 Moldova 26263 G 9 9
19 Moldova 26264 A 9 9
20 Moldova 26265 A 9 9
21 Moldova 26266 G 9 9
22 Moldova 26267 A 9 9
23 Moldova 26268 G 9 9
24 Moldova 26269 A 9 9
25 Moldova 26270 C 9 9
26 Moldova 26271 A 9 9
27 Moldova 26272 G 9 9
28 Moldova 26273 G 9 9
29 Moldova 26274 T 9 9
30 Moldova 26275 A 9 9
31 Moldova 26276 C 9 9
32 Moldova 26277 G 9 9
33 Moldova 26278 T 9 9
34 Moldova 26279 T 9 9
35 Moldova 26280 A 9 9
36 Moldova 26281 A 9 9
37 Moldova 26282 T 9 9
38 Moldova 26283 A 9 9
39 Moldova 26284 G 9 9
40 Moldova 26285 T 9 9
41 Moldova 26286 T 9 9
42 Moldova 26287 A 9 9
43 Moldova 26288 A 9 9
44 Moldova 26289 T 9 9
45 Moldova 26290 A 9 9
46 Moldova 26291 G 9 9
47 Moldova 26292 C 9 9
48 Moldova 26293 G 9 9
49 Moldova 26294 T 9 9
50 Moldova 26295 A 9 9
51 Moldova 26296 C 9 9
52 Moldova 26297 T 9 9
53 Moldova 26298 T 9 9
54 Moldova 26299 C 9 9
55 Moldova 26300 T 9 9
56 Moldova 26301 T 9 9
57 Moldova 26302 T 9 9
58 Moldova 26303 T 9 9
59 Moldova 26304 T 9 9
60 Moldova 26305 C 9 9
61 Moldova 26306 T 9 9
62 Moldova 26307 T 9 9
63 Moldova 26308 G 9 9
64 Moldova 26309 C 9 9
65 Moldova 26310 T 9 9
66 Moldova 26311 T 9 9
67 Moldova 26312 T 9 9
68 Moldova 26313 C 9 9
69 Moldova 26314 G 9 9
70 Moldova 26315 T 9 9
71 Moldova 26316 G 9 9
72 Moldova 26317 G 9 9
73 Moldova 26318 T 9 9
74 Moldova 26319 A 9 9
75 Moldova 26320 T 9 9
76 Moldova 26321 T 9 9
77 Moldova 26322 C 9 9
78 Moldova 26323 T 9 9
79 Moldova 26324 T 9 9
80 Moldova 26325 G 9 9
81 Moldova 26326 C 9 9
82 Moldova 26327 T 9 9
83 Moldova 26328 A 9 9
84 Moldova 26329 G 9 9
85 Moldova 26330 T 9 9
86 Moldova 26331 T 9 9
87 Moldova 26332 A 9 9
88 Moldova 26333 C 9 9
89 Moldova 26334 A 9 9
90 Moldova 26335 C 9 9
91 Moldova 26336 T 9 9
92 Moldova 26337 A 9 9
93 Moldova 26338 G 9 9
94 Moldova 26339 C 9 9
95 Moldova 26340 C 9 9
96 Moldova 26341 A 9 9
97 Moldova 26342 T 9 9
98 Moldova 26343 C 9 9
99 Moldova 26344 C 9 9
100 Moldova 26345 T 9 9
101 Moldova 26346 T 9 9
102 Moldova 26347 A 9 9
103 Moldova 26348 C 9 9
104 Moldova 26349 T 9 9
105 Moldova 26350 G 9 9
106 Moldova 26351 C 9 9
107 Moldova 26352 G 9 9
108 Moldova 26353 C 9 9
109 Moldova 26354 T 9 9
110 Moldova 26355 T 9 9
111 Moldova 26356 C 9 9
112 Moldova 26357 G 9 9
113 Moldova 26358 A 9 9
114 Moldova 26359 T 9 9
115 Moldova 26360 T 9 9
116 Moldova 26361 G 9 9
117 Moldova 26362 T 9 9
118 Moldova 26363 G 9 9
119 Moldova 26364 T 9 9
120 Moldova 26365 G 9 9
121 Moldova 26366 C 9 9
122 Moldova 26367 G 9 9
123 Moldova 26368 T 9 9
124 Moldova 26369 A 9 9
125 Moldova 26370 C 9 9
126 Moldova 26371 T 9 9
127 Moldova 26372 G 9 9
128 Moldova 26373 C 9 9
129 Moldova 26374 T 9 9
130 Moldova 26375 G 9 9
131 Moldova 26376 C 9 9
132 Moldova 26377 A 9 9
133 Moldova 26378 A 9 9
134 Moldova 26379 T 9 9
135 Moldova 26380 A 9 9
136 Moldova 26381 T 9 9
137 Moldova 26382 T 9 9
138 Moldova 26383 G 9 9
139 Moldova 26384 T 9 9
140 Moldova 26385 T 9 9
141 Moldova 26386 A 9 9
142 Moldova 26387 A 9 9
143 Moldova 26388 C 9 9
144 Moldova 26389 G 9 9
145 Moldova 26390 T 9 9
146 Moldova 26391 G 9 9
147 Moldova 26392 A 9 9
148 Moldova 26393 G 9 9
149 Moldova 26394 T 9 9
150 Moldova 26395 C 9 9
151 Moldova 26396 T 9 9
152 Moldova 26397 T 9 9
153 Moldova 26398 G 9 9
154 Moldova 26399 T 9 9
155 Moldova 26400 A 9 9
156 Moldova 26401 A 9 9
157 Moldova 26402 A 9 9
158 Moldova 26403 A 9 9
159 Moldova 26404 C 9 9
160 Moldova 26405 C 9 9
161 Moldova 26406 T 9 9
162 Moldova 26407 T 9 9
163 Moldova 26408 C 9 9
164 Moldova 26409 T 9 9
165 Moldova 26410 T 9 9
166 Moldova 26411 T 9 9
167 Moldova 26412 T 9 9
168 Moldova 26413 T 9 9
169 Moldova 26414 A 9 9
170 Moldova 26415 C 9 9
171 Moldova 26416 G 9 9
172 Moldova 26417 T 9 9
173 Moldova 26418 T 9 9
174 Moldova 26419 T 9 9
175 Moldova 26420 A 9 9
176 Moldova 26421 C 9 9
177 Moldova 26422 T 9 9
178 Moldova 26423 C 9 9
179 Moldova 26424 T 9 9
180 Moldova 26425 C 9 9
181 Moldova 26426 G 9 9
182 Moldova 26427 T 9 9
183 Moldova 26428 G 9 9
184 Moldova 26429 T 9 9
185 Moldova 26430 T 9 9
186 Moldova 26431 A 9 9
187 Moldova 26432 A 9 9
188 Moldova 26433 A 9 9
189 Moldova 26434 A 9 9
190 Moldova 26435 A 9 9
191 Moldova 26436 T 9 9
192 Moldova 26437 C 9 9
193 Moldova 26438 T 9 9
194 Moldova 26439 G 9 9
195 Moldova 26440 A 9 9
196 Moldova 26441 A 9 9
197 Moldova 26442 T 9 9
198 Moldova 26443 T 9 9
199 Moldova 26444 C 9 9
200 Moldova 26445 T 9 9
201 Moldova 26446 T 9 9
202 Moldova 26447 C 9 9
203 Moldova 26448 T 9 9
204 Moldova 26449 A 9 9
205 Moldova 26450 G 9 9
206 Moldova 26451 A 9 9
207 Moldova 26452 G 9 9
208 Moldova 26453 T 9 9
209 Moldova 26454 T 9 9
210 Moldova 26455 C 9 9
211 Moldova 26456 C 9 9
212 Moldova 26457 T 9 9
213 Moldova 26458 G 9 9
214 Moldova 26459 A 9 9
215 Moldova 26460 T 9 9
216 Moldova 26461 C 9 9
217 Moldova 26462 T 9 9
218 Moldova 26463 T 9 9
219 Moldova 26464 C 9 9
220 Moldova 26465 T 9 9
221 Moldova 26466 G 9 9
222 Moldova 26467 G 9 9
223 Moldova 26468 T 9 9
224 Moldova 26469 C 9 9
225 Moldova 26470 T 9 9
226 Moldova 26471 A 9 9
227 Moldova 26472 A 9 9