National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G I K L M N P R S T V Y
*     2                                  
-     228                                  
?                                        
A     12                                  
C     9                                  
D     3                                  
E     6                                  
F     15                                  
G     3                                  
I     9                                  
K     6                                  
L     43         1                        
M     3                                  
N     15                                  
P     6                                  
R     9                                  
S     24                           1      
T     12                                  
V     39                                  
Y     12                                  

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Lithuania 26245 A 235 235
1 Lithuania 26246 T 235 235
2 Lithuania 26247 G 235 235
3 Lithuania 26248 T 235 235
4 Lithuania 26249 A 235 235
5 Lithuania 26250 C 235 235
6 Lithuania 26251 T 235 235
7 Lithuania 26252 C 235 235
8 Lithuania 26253 A G 235 234 Ser3Ser
9 Lithuania 26254 T 235 235
10 Lithuania 26255 T 235 235
11 Lithuania 26256 C 235 235
12 Lithuania 26257 G 235 235
13 Lithuania 26258 T 235 235
14 Lithuania 26259 T 235 235
15 Lithuania 26260 T 235 235
16 Lithuania 26261 C 235 235
17 Lithuania 26262 G 235 235
18 Lithuania 26263 G 235 235
19 Lithuania 26264 A 235 235
20 Lithuania 26265 A 235 235
21 Lithuania 26266 G 235 235
22 Lithuania 26267 A 235 235
23 Lithuania 26268 G 235 235
24 Lithuania 26269 A 235 235
25 Lithuania 26270 C 235 235
26 Lithuania 26271 A 235 235
27 Lithuania 26272 G 235 235
28 Lithuania 26273 G 235 235
29 Lithuania 26274 T 235 235
30 Lithuania 26275 A 235 235
31 Lithuania 26276 C 235 235
32 Lithuania 26277 G 235 235
33 Lithuania 26278 T 235 235
34 Lithuania 26279 T 235 235
35 Lithuania 26280 A 235 235
36 Lithuania 26281 A 235 235
37 Lithuania 26282 T 235 235
38 Lithuania 26283 A 235 235
39 Lithuania 26284 G 235 235
40 Lithuania 26285 T 235 235
41 Lithuania 26286 T 235 235
42 Lithuania 26287 A 235 235
43 Lithuania 26288 A 235 235
44 Lithuania 26289 T 235 235
45 Lithuania 26290 A 235 235
46 Lithuania 26291 G 235 235
47 Lithuania 26292 C 235 235
48 Lithuania 26293 G 235 235
49 Lithuania 26294 T 235 235
50 Lithuania 26295 A 235 235
51 Lithuania 26296 C 235 235
52 Lithuania 26297 T 235 235
53 Lithuania 26298 T 235 235
54 Lithuania 26299 C 235 235
55 Lithuania 26300 T 235 235
56 Lithuania 26301 T 235 235
57 Lithuania 26302 T 235 235
58 Lithuania 26303 T 235 235
59 Lithuania 26304 T 235 235
60 Lithuania 26305 C T 235 234 Leu21Phe
61 Lithuania 26306 T 235 235
62 Lithuania 26307 T 235 235
63 Lithuania 26308 G 235 235
64 Lithuania 26309 C 235 235
65 Lithuania 26310 T 235 235
66 Lithuania 26311 T 235 235
67 Lithuania 26312 T 235 235
68 Lithuania 26313 C 235 235
69 Lithuania 26314 G 235 235
70 Lithuania 26315 T 235 235
71 Lithuania 26316 G 235 235
72 Lithuania 26317 G 235 235
73 Lithuania 26318 T 235 235
74 Lithuania 26319 A 235 235
75 Lithuania 26320 T 235 235
76 Lithuania 26321 T 235 235
77 Lithuania 26322 C 235 235
78 Lithuania 26323 T 235 235
79 Lithuania 26324 T 235 235
80 Lithuania 26325 G 235 235
81 Lithuania 26326 C 235 235
82 Lithuania 26327 T 235 235
83 Lithuania 26328 A 235 235
84 Lithuania 26329 G 235 235
85 Lithuania 26330 T 235 235
86 Lithuania 26331 T 235 235
87 Lithuania 26332 A 235 235
88 Lithuania 26333 C 235 235
89 Lithuania 26334 A 235 235
90 Lithuania 26335 C 235 235
91 Lithuania 26336 T 235 235
92 Lithuania 26337 A 235 235
93 Lithuania 26338 G 235 235
94 Lithuania 26339 C 235 235
95 Lithuania 26340 C 235 235
96 Lithuania 26341 A 235 235
97 Lithuania 26342 T 235 235
98 Lithuania 26343 C 235 235
99 Lithuania 26344 C 235 235
100 Lithuania 26345 T 235 235
101 Lithuania 26346 T 235 235
102 Lithuania 26347 A 235 235
103 Lithuania 26348 C 235 235
104 Lithuania 26349 T 235 235
105 Lithuania 26350 G 235 235
106 Lithuania 26351 C 235 235
107 Lithuania 26352 G 235 235
108 Lithuania 26353 C 235 235
109 Lithuania 26354 T 235 235
110 Lithuania 26355 T 235 235
111 Lithuania 26356 C 235 235
112 Lithuania 26357 G 235 235
113 Lithuania 26358 A 235 235
114 Lithuania 26359 T 235 235
115 Lithuania 26360 T 235 235
116 Lithuania 26361 G 235 235
117 Lithuania 26362 T 235 235
118 Lithuania 26363 G 235 235
119 Lithuania 26364 T 235 235
120 Lithuania 26365 G 235 235
121 Lithuania 26366 C 235 235
122 Lithuania 26367 G 235 235
123 Lithuania 26368 T 235 235
124 Lithuania 26369 A 235 235
125 Lithuania 26370 C 235 235
126 Lithuania 26371 T 235 235
127 Lithuania 26372 G 235 235
128 Lithuania 26373 C 235 235
129 Lithuania 26374 T 235 235
130 Lithuania 26375 G 235 235
131 Lithuania 26376 C 235 235
132 Lithuania 26377 A 235 235
133 Lithuania 26378 A 235 235
134 Lithuania 26379 T 235 235
135 Lithuania 26380 A 235 235
136 Lithuania 26381 T 235 235
137 Lithuania 26382 T 235 235
138 Lithuania 26383 G 235 235
139 Lithuania 26384 T 235 235
140 Lithuania 26385 T 235 235
141 Lithuania 26386 A 235 235
142 Lithuania 26387 A 235 235
143 Lithuania 26388 C 235 235
144 Lithuania 26389 G 235 235
145 Lithuania 26390 T 235 235
146 Lithuania 26391 G 235 235
147 Lithuania 26392 A 235 235
148 Lithuania 26393 G 235 235
149 Lithuania 26394 T 235 235
150 Lithuania 26395 C 235 235
151 Lithuania 26396 T 235 235
152 Lithuania 26397 T 235 235
153 Lithuania 26398 G 235 235
154 Lithuania 26399 T 235 235
155 Lithuania 26400 A 235 235
156 Lithuania 26401 A 235 235
157 Lithuania 26402 A 235 235
158 Lithuania 26403 A 235 235
159 Lithuania 26404 C 235 235
160 Lithuania 26405 C 235 235
161 Lithuania 26406 T 235 235
162 Lithuania 26407 T 235 235
163 Lithuania 26408 C 235 235
164 Lithuania 26409 T 235 235
165 Lithuania 26410 T 235 235
166 Lithuania 26411 T 235 235
167 Lithuania 26412 T 235 235
168 Lithuania 26413 T 235 235
169 Lithuania 26414 A 235 235
170 Lithuania 26415 C 235 235
171 Lithuania 26416 G 235 235
172 Lithuania 26417 T 235 235
173 Lithuania 26418 T 235 235
174 Lithuania 26419 T 235 235
175 Lithuania 26420 A 235 235
176 Lithuania 26421 C 235 235
177 Lithuania 26422 T 235 235
178 Lithuania 26423 C 235 235
179 Lithuania 26424 T 235 235
180 Lithuania 26425 C 235 235
181 Lithuania 26426 G 235 235
182 Lithuania 26427 T 235 235
183 Lithuania 26428 G 235 235
184 Lithuania 26429 T 235 235
185 Lithuania 26430 T 235 235
186 Lithuania 26431 A 235 235
187 Lithuania 26432 A 235 235
188 Lithuania 26433 A 235 235
189 Lithuania 26434 A 235 235
190 Lithuania 26435 A 235 235
191 Lithuania 26436 T 235 235
192 Lithuania 26437 C 235 235
193 Lithuania 26438 T 235 235
194 Lithuania 26439 G 235 235
195 Lithuania 26440 A 235 235
196 Lithuania 26441 A 235 235
197 Lithuania 26442 T 235 235
198 Lithuania 26443 T 235 235
199 Lithuania 26444 C 235 235
200 Lithuania 26445 T 235 235
201 Lithuania 26446 T 235 235
202 Lithuania 26447 C 235 235
203 Lithuania 26448 T 235 234
204 Lithuania 26449 A 235 234
205 Lithuania 26450 G 235 234
206 Lithuania 26451 A 235 234
207 Lithuania 26452 G 235 234
208 Lithuania 26453 T 235 234
209 Lithuania 26454 T 235 234
210 Lithuania 26455 C 235 234
211 Lithuania 26456 C 235 235
212 Lithuania 26457 T 235 235
213 Lithuania 26458 G 235 235
214 Lithuania 26459 A 235 235
215 Lithuania 26460 T 235 235
216 Lithuania 26461 C 235 235
217 Lithuania 26462 T 235 235
218 Lithuania 26463 T 235 235
219 Lithuania 26464 C 235 235
220 Lithuania 26465 T 234 234
221 Lithuania 26466 G 234 234
222 Lithuania 26467 G 234 234
223 Lithuania 26468 T 234 234
224 Lithuania 26469 C 234 234
225 Lithuania 26470 T 234 234
226 Lithuania 26471 A 234 234
227 Lithuania 26472 A 234 234