National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G I K L M N P R S T V Y
*     2                                  
-     228                                  
?                                        
A     12                                  
C     9                                  
D     3                                  
E     6                                  
F     15                                  
G     3                                  
I     9                                  
K     6                                  
L     43                                  
M     3                                  
N     15                                  
P     6                                  
R     9                                  
S     24                                  
T     12                                  
V     39     1                            
Y     12                                  

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Lebanon 26245 A 22 22
1 Lebanon 26246 T 22 22
2 Lebanon 26247 G 22 22
3 Lebanon 26248 T 22 22
4 Lebanon 26249 A 22 22
5 Lebanon 26250 C 22 22
6 Lebanon 26251 T 22 22
7 Lebanon 26252 C 22 22
8 Lebanon 26253 A 22 22
9 Lebanon 26254 T 22 22
10 Lebanon 26255 T 22 22
11 Lebanon 26256 C 22 22
12 Lebanon 26257 G 22 22
13 Lebanon 26258 T 22 22
14 Lebanon 26259 T 22 22
15 Lebanon 26260 T 22 22
16 Lebanon 26261 C 22 22
17 Lebanon 26262 G 22 22
18 Lebanon 26263 G 22 22
19 Lebanon 26264 A 22 22
20 Lebanon 26265 A 22 22
21 Lebanon 26266 G 22 22
22 Lebanon 26267 A 22 22
23 Lebanon 26268 G 22 22
24 Lebanon 26269 A 22 22
25 Lebanon 26270 C 22 22
26 Lebanon 26271 A 22 22
27 Lebanon 26272 G 22 22
28 Lebanon 26273 G 22 22
29 Lebanon 26274 T 22 22
30 Lebanon 26275 A 22 22
31 Lebanon 26276 C 22 22
32 Lebanon 26277 G 22 22
33 Lebanon 26278 T 22 22
34 Lebanon 26279 T 22 22
35 Lebanon 26280 A 22 22
36 Lebanon 26281 A 22 22
37 Lebanon 26282 T 22 22
38 Lebanon 26283 A 22 22
39 Lebanon 26284 G 22 22
40 Lebanon 26285 T 22 22
41 Lebanon 26286 T 22 22
42 Lebanon 26287 A 22 22
43 Lebanon 26288 A 22 22
44 Lebanon 26289 T 22 22
45 Lebanon 26290 A 22 22
46 Lebanon 26291 G 22 22
47 Lebanon 26292 C 22 22
48 Lebanon 26293 G 22 22
49 Lebanon 26294 T 22 22
50 Lebanon 26295 A 22 22
51 Lebanon 26296 C 22 22
52 Lebanon 26297 T 22 22
53 Lebanon 26298 T 23 23
54 Lebanon 26299 C 23 23
55 Lebanon 26300 T 23 23
56 Lebanon 26301 T 23 23
57 Lebanon 26302 T 23 23
58 Lebanon 26303 T 23 23
59 Lebanon 26304 T 23 23
60 Lebanon 26305 C 23 23
61 Lebanon 26306 T 23 23
62 Lebanon 26307 T 23 23
63 Lebanon 26308 G 23 23
64 Lebanon 26309 C 23 23
65 Lebanon 26310 T 23 23
66 Lebanon 26311 T 23 23
67 Lebanon 26312 T 23 23
68 Lebanon 26313 C 23 23
69 Lebanon 26314 G 23 23
70 Lebanon 26315 T 23 23
71 Lebanon 26316 G 23 23
72 Lebanon 26317 G 23 23
73 Lebanon 26318 T 23 23
74 Lebanon 26319 A 23 23
75 Lebanon 26320 T 23 23
76 Lebanon 26321 T 23 23
77 Lebanon 26322 C 23 23
78 Lebanon 26323 T 23 23
79 Lebanon 26324 T 23 23
80 Lebanon 26325 G 23 23
81 Lebanon 26326 C 23 23
82 Lebanon 26327 T 23 23
83 Lebanon 26328 A 23 23
84 Lebanon 26329 G 23 23
85 Lebanon 26330 T 23 23
86 Lebanon 26331 T 23 23
87 Lebanon 26332 A 23 23
88 Lebanon 26333 C 23 23
89 Lebanon 26334 A 23 23
90 Lebanon 26335 C 23 23
91 Lebanon 26336 T 23 23
92 Lebanon 26337 A 23 23
93 Lebanon 26338 G 23 23
94 Lebanon 26339 C 23 23
95 Lebanon 26340 C 23 23
96 Lebanon 26341 A 23 23
97 Lebanon 26342 T 23 23
98 Lebanon 26343 C 23 23
99 Lebanon 26344 C 23 23
100 Lebanon 26345 T 23 23
101 Lebanon 26346 T 23 23
102 Lebanon 26347 A 23 23
103 Lebanon 26348 C 23 23
104 Lebanon 26349 T 23 23
105 Lebanon 26350 G 23 23
106 Lebanon 26351 C 23 23
107 Lebanon 26352 G 23 23
108 Lebanon 26353 C 23 23
109 Lebanon 26354 T 23 23
110 Lebanon 26355 T 23 23
111 Lebanon 26356 C 23 23
112 Lebanon 26357 G 23 23
113 Lebanon 26358 A 23 23
114 Lebanon 26359 T 23 23
115 Lebanon 26360 T 23 23
116 Lebanon 26361 G 23 23
117 Lebanon 26362 T 23 23
118 Lebanon 26363 G 23 23
119 Lebanon 26364 T 23 23
120 Lebanon 26365 G 23 23
121 Lebanon 26366 C 23 23
122 Lebanon 26367 G 23 23
123 Lebanon 26368 T 23 23
124 Lebanon 26369 A 23 23
125 Lebanon 26370 C 23 23
126 Lebanon 26371 T 23 23
127 Lebanon 26372 G 23 23
128 Lebanon 26373 C 23 23
129 Lebanon 26374 T 23 23
130 Lebanon 26375 G 23 23
131 Lebanon 26376 C 23 23
132 Lebanon 26377 A 23 23
133 Lebanon 26378 A 23 23
134 Lebanon 26379 T 23 23
135 Lebanon 26380 A 23 23
136 Lebanon 26381 T 23 23
137 Lebanon 26382 T 23 23
138 Lebanon 26383 G 23 23
139 Lebanon 26384 T 23 23
140 Lebanon 26385 T 23 23
141 Lebanon 26386 A 23 23
142 Lebanon 26387 A 23 23
143 Lebanon 26388 C 23 23
144 Lebanon 26389 G 23 23
145 Lebanon 26390 T 23 23
146 Lebanon 26391 G 23 23
147 Lebanon 26392 A 23 23
148 Lebanon 26393 G 23 23
149 Lebanon 26394 T 23 23
150 Lebanon 26395 C 23 23
151 Lebanon 26396 T 23 23
152 Lebanon 26397 T 23 23
153 Lebanon 26398 G 23 23
154 Lebanon 26399 T 23 23
155 Lebanon 26400 A 23 23
156 Lebanon 26401 A 23 23
157 Lebanon 26402 A 23 23
158 Lebanon 26403 A 23 23
159 Lebanon 26404 C 23 23
160 Lebanon 26405 C 23 23
161 Lebanon 26406 T 23 23
162 Lebanon 26407 T 23 23
163 Lebanon 26408 C 23 23
164 Lebanon 26409 T 23 23
165 Lebanon 26410 T 23 23
166 Lebanon 26411 T 23 23
167 Lebanon 26412 T 23 23
168 Lebanon 26413 T 23 23
169 Lebanon 26414 A 23 23
170 Lebanon 26415 C 23 23
171 Lebanon 26416 G 23 23
172 Lebanon 26417 T 23 23
173 Lebanon 26418 T 23 23
174 Lebanon 26419 T 23 23
175 Lebanon 26420 A 23 23
176 Lebanon 26421 C 23 23
177 Lebanon 26422 T 23 23
178 Lebanon 26423 C 23 23
179 Lebanon 26424 T 23 23
180 Lebanon 26425 C 23 23
181 Lebanon 26426 G 23 23
182 Lebanon 26427 T 23 23
183 Lebanon 26428 G 23 23
184 Lebanon 26429 T A 23 22 Val62Asp
185 Lebanon 26430 T 23 23
186 Lebanon 26431 A 23 23
187 Lebanon 26432 A 23 23
188 Lebanon 26433 A 23 23
189 Lebanon 26434 A 23 23
190 Lebanon 26435 A 23 23
191 Lebanon 26436 T 23 23
192 Lebanon 26437 C 23 23
193 Lebanon 26438 T 23 23
194 Lebanon 26439 G 23 23
195 Lebanon 26440 A 23 23
196 Lebanon 26441 A 23 23
197 Lebanon 26442 T 23 23
198 Lebanon 26443 T 23 23
199 Lebanon 26444 C 23 23
200 Lebanon 26445 T 23 23
201 Lebanon 26446 T 23 23
202 Lebanon 26447 C 23 23
203 Lebanon 26448 T 23 23
204 Lebanon 26449 A 23 23
205 Lebanon 26450 G 23 23
206 Lebanon 26451 A 23 23
207 Lebanon 26452 G 23 23
208 Lebanon 26453 T 23 23
209 Lebanon 26454 T 23 23
210 Lebanon 26455 C 23 23
211 Lebanon 26456 C 23 23
212 Lebanon 26457 T 23 23
213 Lebanon 26458 G 23 23
214 Lebanon 26459 A 23 23
215 Lebanon 26460 T 23 23
216 Lebanon 26461 C 23 23
217 Lebanon 26462 T 23 23
218 Lebanon 26463 T 23 23
219 Lebanon 26464 C 23 23
220 Lebanon 26465 T 23 23
221 Lebanon 26466 G 23 23
222 Lebanon 26467 G 23 23
223 Lebanon 26468 T 23 23
224 Lebanon 26469 C 23 23
225 Lebanon 26470 T 23 23
226 Lebanon 26471 A 23 23
227 Lebanon 26472 A 23 23