National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G I K L M N P R S T V Y
*     2                                  
-     228                                  
?                                        
A     12                                  
C     9                                  
D     3                                  
E     6                                  
F     15                                  
G     3                                  
I     9                                  
K     6                                  
L     43                                  
M     3                                  
N     15                     1            
P     6                                  
R     9                                  
S     24                           1      
T     12                                  
V     39         1                        
Y     12                                  

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Latvia 26245 A 233 233
1 Latvia 26246 T 233 233
2 Latvia 26247 G 233 233
3 Latvia 26248 T 233 233
4 Latvia 26249 A 233 233
5 Latvia 26250 C 233 233
6 Latvia 26251 T 233 233
7 Latvia 26252 C 233 233
8 Latvia 26253 A 233 233
9 Latvia 26254 T 233 233
10 Latvia 26255 T 233 233
11 Latvia 26256 C 233 233
12 Latvia 26257 G 233 233
13 Latvia 26258 T 233 233
14 Latvia 26259 T 233 233
15 Latvia 26260 T 233 233
16 Latvia 26261 C 233 233
17 Latvia 26262 G 233 233
18 Latvia 26263 G 233 233
19 Latvia 26264 A 233 233
20 Latvia 26265 A 233 233
21 Latvia 26266 G 233 233
22 Latvia 26267 A 233 233
23 Latvia 26268 G 233 233
24 Latvia 26269 A 233 233
25 Latvia 26270 C 233 233
26 Latvia 26271 A 233 233
27 Latvia 26272 G 233 233
28 Latvia 26273 G 233 233
29 Latvia 26274 T 233 233
30 Latvia 26275 A 233 233
31 Latvia 26276 C 233 233
32 Latvia 26277 G 233 233
33 Latvia 26278 T 233 233
34 Latvia 26279 T 233 233
35 Latvia 26280 A 233 233
36 Latvia 26281 A 233 233
37 Latvia 26282 T 233 233
38 Latvia 26283 A 233 233
39 Latvia 26284 G 233 233
40 Latvia 26285 T 233 233
41 Latvia 26286 T 233 233
42 Latvia 26287 A 233 233
43 Latvia 26288 A 233 233
44 Latvia 26289 T 233 233
45 Latvia 26290 A 233 233
46 Latvia 26291 G 233 233
47 Latvia 26292 C 233 233
48 Latvia 26293 G 233 233
49 Latvia 26294 T 233 233
50 Latvia 26295 A 233 233
51 Latvia 26296 C 233 233
52 Latvia 26297 T 233 233
53 Latvia 26298 T 233 233
54 Latvia 26299 C 233 233
55 Latvia 26300 T 233 233
56 Latvia 26301 T 233 233
57 Latvia 26302 T 233 233
58 Latvia 26303 T 233 233
59 Latvia 26304 T 233 233
60 Latvia 26305 C 233 233
61 Latvia 26306 T 233 233
62 Latvia 26307 T 233 233
63 Latvia 26308 G 233 233
64 Latvia 26309 C 233 233
65 Latvia 26310 T 233 233
66 Latvia 26311 T 233 233
67 Latvia 26312 T 233 233
68 Latvia 26313 C 233 233
69 Latvia 26314 G 233 233
70 Latvia 26315 T 233 233
71 Latvia 26316 G 233 233
72 Latvia 26317 G 233 233
73 Latvia 26318 T 233 233
74 Latvia 26319 A 233 233
75 Latvia 26320 T 233 233
76 Latvia 26321 T 233 233
77 Latvia 26322 C 233 233
78 Latvia 26323 T 233 233
79 Latvia 26324 T 233 233
80 Latvia 26325 G 233 233
81 Latvia 26326 C 233 233
82 Latvia 26327 T 233 233
83 Latvia 26328 A 233 233
84 Latvia 26329 G 233 233
85 Latvia 26330 T 233 233
86 Latvia 26331 T 233 233
87 Latvia 26332 A 233 233
88 Latvia 26333 C 233 233
89 Latvia 26334 A 233 233
90 Latvia 26335 C 233 233
91 Latvia 26336 T 233 233
92 Latvia 26337 A 233 233
93 Latvia 26338 G 233 233
94 Latvia 26339 C 233 233
95 Latvia 26340 C 233 233
96 Latvia 26341 A 233 233
97 Latvia 26342 T 233 233
98 Latvia 26343 C 233 233
99 Latvia 26344 C 233 233
100 Latvia 26345 T 233 233
101 Latvia 26346 T 233 233
102 Latvia 26347 A 233 233
103 Latvia 26348 C 233 233
104 Latvia 26349 T 233 233
105 Latvia 26350 G 233 233
106 Latvia 26351 C 233 233
107 Latvia 26352 G 233 233
108 Latvia 26353 C 233 233
109 Latvia 26354 T 233 233
110 Latvia 26355 T 233 233
111 Latvia 26356 C 233 233
112 Latvia 26357 G 233 233
113 Latvia 26358 A 233 233
114 Latvia 26359 T 233 233
115 Latvia 26360 T 233 233
116 Latvia 26361 G 233 233
117 Latvia 26362 T 233 233
118 Latvia 26363 G 233 233
119 Latvia 26364 T 233 233
120 Latvia 26365 G 233 233
121 Latvia 26366 C 233 233
122 Latvia 26367 G 233 233
123 Latvia 26368 T 233 233
124 Latvia 26369 A 233 233
125 Latvia 26370 C 233 233
126 Latvia 26371 T 233 233
127 Latvia 26372 G 233 233
128 Latvia 26373 C 233 233
129 Latvia 26374 T 233 233
130 Latvia 26375 G 233 233
131 Latvia 26376 C 233 233
132 Latvia 26377 A 233 233
133 Latvia 26378 A 233 233
134 Latvia 26379 T 233 233
135 Latvia 26380 A 233 233
136 Latvia 26381 T 233 233
137 Latvia 26382 T 233 233
138 Latvia 26383 G 233 233
139 Latvia 26384 T 233 233
140 Latvia 26385 T 233 233
141 Latvia 26386 A 233 233
142 Latvia 26387 A 233 233
143 Latvia 26388 C 233 233
144 Latvia 26389 G 233 233
145 Latvia 26390 T 233 233
146 Latvia 26391 G 233 233
147 Latvia 26392 A 233 233
148 Latvia 26393 G 233 233
149 Latvia 26394 T 233 233
150 Latvia 26395 C 233 233
151 Latvia 26396 T 233 233
152 Latvia 26397 T 233 233
153 Latvia 26398 G 233 233
154 Latvia 26399 T 233 233
155 Latvia 26400 A 233 233
156 Latvia 26401 A 233 233
157 Latvia 26402 A 233 233
158 Latvia 26403 A 233 233
159 Latvia 26404 C 233 233
160 Latvia 26405 C 233 233
161 Latvia 26406 T 233 233
162 Latvia 26407 T 233 233
163 Latvia 26408 C 233 233
164 Latvia 26409 T 233 233
165 Latvia 26410 T 233 233
166 Latvia 26411 T 233 233
167 Latvia 26412 T 233 233
168 Latvia 26413 T 233 233
169 Latvia 26414 A 233 233
170 Latvia 26415 C 233 233
171 Latvia 26416 G T 233 232 Val58Phe
172 Latvia 26417 T 233 233
173 Latvia 26418 T 233 233
174 Latvia 26419 T 233 233
175 Latvia 26420 A 233 233
176 Latvia 26421 C 233 233
177 Latvia 26422 T 233 233
178 Latvia 26423 C 233 233
179 Latvia 26424 T C 233 230 Ser60Ser
180 Latvia 26425 C 233 233
181 Latvia 26426 G 233 233
182 Latvia 26427 T 233 233
183 Latvia 26428 G 233 233
184 Latvia 26429 T 233 233
185 Latvia 26430 T 233 233
186 Latvia 26431 A 233 233
187 Latvia 26432 A 233 233
188 Latvia 26433 A 233 233
189 Latvia 26434 A 233 233
190 Latvia 26435 A 233 233
191 Latvia 26436 T C 233 232 Asn64Asn
192 Latvia 26437 C 233 233
193 Latvia 26438 T 233 233
194 Latvia 26439 G 233 233
195 Latvia 26440 A 233 233
196 Latvia 26441 A 233 233
197 Latvia 26442 T 233 233
198 Latvia 26443 T 233 233
199 Latvia 26444 C 233 233
200 Latvia 26445 T 233 233
201 Latvia 26446 T 233 233
202 Latvia 26447 C 233 233
203 Latvia 26448 T 233 233
204 Latvia 26449 A 233 233
205 Latvia 26450 G 233 233
206 Latvia 26451 A 233 233
207 Latvia 26452 G 233 233
208 Latvia 26453 T 233 233
209 Latvia 26454 T 233 233
210 Latvia 26455 C 233 233
211 Latvia 26456 C 233 233
212 Latvia 26457 T 233 233
213 Latvia 26458 G 233 233
214 Latvia 26459 A 233 233
215 Latvia 26460 T 233 233
216 Latvia 26461 C 233 233
217 Latvia 26462 T 233 233
218 Latvia 26463 T 233 233
219 Latvia 26464 C 233 233
220 Latvia 26465 T 233 233
221 Latvia 26466 G 233 233
222 Latvia 26467 G 233 233
223 Latvia 26468 T 233 233
224 Latvia 26469 C 233 233
225 Latvia 26470 T 233 233
226 Latvia 26471 A 233 233
227 Latvia 26472 A 233 233