National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G I K L M N P R S T V Y
*     2                                  
-     228                                  
?                                        
A     12                                  
C     9                                  
D     3                                  
E     6                                  
F     15                                  
G     3                                  
I     9                                  
K     6                                  
L     43                                  
M     3                                  
N     15                                  
P     6                                  
R     9                                  
S     24                                  
T     12                                  
V     39                                  
Y     12                                  

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Kuwait 26245 A 8 8
1 Kuwait 26246 T 8 8
2 Kuwait 26247 G 8 8
3 Kuwait 26248 T 8 8
4 Kuwait 26249 A 8 8
5 Kuwait 26250 C 8 8
6 Kuwait 26251 T 8 8
7 Kuwait 26252 C 8 8
8 Kuwait 26253 A 8 8
9 Kuwait 26254 T 8 8
10 Kuwait 26255 T 8 8
11 Kuwait 26256 C 8 8
12 Kuwait 26257 G 8 8
13 Kuwait 26258 T 8 8
14 Kuwait 26259 T 8 8
15 Kuwait 26260 T 8 8
16 Kuwait 26261 C 8 8
17 Kuwait 26262 G 8 8
18 Kuwait 26263 G 8 8
19 Kuwait 26264 A 8 8
20 Kuwait 26265 A 8 8
21 Kuwait 26266 G 8 8
22 Kuwait 26267 A 8 8
23 Kuwait 26268 G 8 8
24 Kuwait 26269 A 8 8
25 Kuwait 26270 C 8 8
26 Kuwait 26271 A 8 8
27 Kuwait 26272 G 8 8
28 Kuwait 26273 G 8 8
29 Kuwait 26274 T 8 8
30 Kuwait 26275 A 8 8
31 Kuwait 26276 C 8 8
32 Kuwait 26277 G 8 8
33 Kuwait 26278 T 8 8
34 Kuwait 26279 T 8 8
35 Kuwait 26280 A 8 8
36 Kuwait 26281 A 8 8
37 Kuwait 26282 T 8 8
38 Kuwait 26283 A 8 8
39 Kuwait 26284 G 8 8
40 Kuwait 26285 T 8 8
41 Kuwait 26286 T 8 8
42 Kuwait 26287 A 8 8
43 Kuwait 26288 A 8 8
44 Kuwait 26289 T 8 8
45 Kuwait 26290 A 8 8
46 Kuwait 26291 G 8 8
47 Kuwait 26292 C 8 8
48 Kuwait 26293 G 8 8
49 Kuwait 26294 T 8 8
50 Kuwait 26295 A 8 8
51 Kuwait 26296 C 8 8
52 Kuwait 26297 T 8 8
53 Kuwait 26298 T 8 8
54 Kuwait 26299 C 8 8
55 Kuwait 26300 T 8 8
56 Kuwait 26301 T 8 8
57 Kuwait 26302 T 8 8
58 Kuwait 26303 T 8 8
59 Kuwait 26304 T 8 8
60 Kuwait 26305 C 8 8
61 Kuwait 26306 T 8 8
62 Kuwait 26307 T 8 8
63 Kuwait 26308 G 8 8
64 Kuwait 26309 C 8 8
65 Kuwait 26310 T 8 8
66 Kuwait 26311 T 8 8
67 Kuwait 26312 T 8 8
68 Kuwait 26313 C 8 8
69 Kuwait 26314 G 8 8
70 Kuwait 26315 T 8 8
71 Kuwait 26316 G 8 8
72 Kuwait 26317 G 8 8
73 Kuwait 26318 T 8 8
74 Kuwait 26319 A 8 8
75 Kuwait 26320 T 8 8
76 Kuwait 26321 T 8 8
77 Kuwait 26322 C 8 8
78 Kuwait 26323 T 8 8
79 Kuwait 26324 T 8 8
80 Kuwait 26325 G 8 8
81 Kuwait 26326 C 8 8
82 Kuwait 26327 T 8 8
83 Kuwait 26328 A 8 8
84 Kuwait 26329 G 8 8
85 Kuwait 26330 T 8 8
86 Kuwait 26331 T 8 8
87 Kuwait 26332 A 8 8
88 Kuwait 26333 C 8 8
89 Kuwait 26334 A 8 8
90 Kuwait 26335 C 8 8
91 Kuwait 26336 T 8 8
92 Kuwait 26337 A 8 8
93 Kuwait 26338 G 8 8
94 Kuwait 26339 C 8 8
95 Kuwait 26340 C 8 8
96 Kuwait 26341 A 8 8
97 Kuwait 26342 T 8 8
98 Kuwait 26343 C 8 8
99 Kuwait 26344 C 8 8
100 Kuwait 26345 T 8 8
101 Kuwait 26346 T 8 8
102 Kuwait 26347 A 8 8
103 Kuwait 26348 C 8 8
104 Kuwait 26349 T 8 8
105 Kuwait 26350 G 8 8
106 Kuwait 26351 C 8 8
107 Kuwait 26352 G 8 8
108 Kuwait 26353 C 8 8
109 Kuwait 26354 T 8 8
110 Kuwait 26355 T 8 8
111 Kuwait 26356 C 8 8
112 Kuwait 26357 G 8 8
113 Kuwait 26358 A 8 8
114 Kuwait 26359 T 8 8
115 Kuwait 26360 T 8 8
116 Kuwait 26361 G 8 8
117 Kuwait 26362 T 8 8
118 Kuwait 26363 G 8 8
119 Kuwait 26364 T 8 8
120 Kuwait 26365 G 8 8
121 Kuwait 26366 C 8 8
122 Kuwait 26367 G 8 8
123 Kuwait 26368 T 8 8
124 Kuwait 26369 A 8 8
125 Kuwait 26370 C 8 8
126 Kuwait 26371 T 8 8
127 Kuwait 26372 G 8 8
128 Kuwait 26373 C 8 8
129 Kuwait 26374 T 8 8
130 Kuwait 26375 G 8 8
131 Kuwait 26376 C 8 8
132 Kuwait 26377 A 8 8
133 Kuwait 26378 A 8 8
134 Kuwait 26379 T 8 8
135 Kuwait 26380 A 8 8
136 Kuwait 26381 T 8 8
137 Kuwait 26382 T 8 8
138 Kuwait 26383 G 8 8
139 Kuwait 26384 T 8 8
140 Kuwait 26385 T 8 8
141 Kuwait 26386 A 8 8
142 Kuwait 26387 A 8 8
143 Kuwait 26388 C 8 8
144 Kuwait 26389 G 8 8
145 Kuwait 26390 T 8 8
146 Kuwait 26391 G 8 8
147 Kuwait 26392 A 8 8
148 Kuwait 26393 G 8 8
149 Kuwait 26394 T 8 8
150 Kuwait 26395 C 8 8
151 Kuwait 26396 T 8 8
152 Kuwait 26397 T 8 8
153 Kuwait 26398 G 8 8
154 Kuwait 26399 T 8 8
155 Kuwait 26400 A 8 8
156 Kuwait 26401 A 8 8
157 Kuwait 26402 A 8 8
158 Kuwait 26403 A 8 8
159 Kuwait 26404 C 8 8
160 Kuwait 26405 C 8 8
161 Kuwait 26406 T 8 8
162 Kuwait 26407 T 8 8
163 Kuwait 26408 C 8 8
164 Kuwait 26409 T 8 8
165 Kuwait 26410 T 8 8
166 Kuwait 26411 T 8 8
167 Kuwait 26412 T 8 8
168 Kuwait 26413 T 8 8
169 Kuwait 26414 A 8 8
170 Kuwait 26415 C 8 8
171 Kuwait 26416 G 8 8
172 Kuwait 26417 T 8 8
173 Kuwait 26418 T 8 8
174 Kuwait 26419 T 8 8
175 Kuwait 26420 A 8 8
176 Kuwait 26421 C 8 8
177 Kuwait 26422 T 8 8
178 Kuwait 26423 C 8 8
179 Kuwait 26424 T 8 8
180 Kuwait 26425 C 8 8
181 Kuwait 26426 G 8 8
182 Kuwait 26427 T 8 8
183 Kuwait 26428 G 8 8
184 Kuwait 26429 T 8 8
185 Kuwait 26430 T 8 8
186 Kuwait 26431 A 8 8
187 Kuwait 26432 A 8 8
188 Kuwait 26433 A 8 8
189 Kuwait 26434 A 8 8
190 Kuwait 26435 A 8 8
191 Kuwait 26436 T 8 8
192 Kuwait 26437 C 8 8
193 Kuwait 26438 T 8 8
194 Kuwait 26439 G 8 8
195 Kuwait 26440 A 8 8
196 Kuwait 26441 A 8 8
197 Kuwait 26442 T 8 8
198 Kuwait 26443 T 8 8
199 Kuwait 26444 C 8 8
200 Kuwait 26445 T 8 8
201 Kuwait 26446 T 8 8
202 Kuwait 26447 C 8 8
203 Kuwait 26448 T 8 8
204 Kuwait 26449 A 8 8
205 Kuwait 26450 G 8 8
206 Kuwait 26451 A 8 8
207 Kuwait 26452 G 8 8
208 Kuwait 26453 T 8 8
209 Kuwait 26454 T 8 8
210 Kuwait 26455 C 8 8
211 Kuwait 26456 C 8 8
212 Kuwait 26457 T 8 8
213 Kuwait 26458 G 8 8
214 Kuwait 26459 A 8 8
215 Kuwait 26460 T 8 8
216 Kuwait 26461 C 8 8
217 Kuwait 26462 T 8 8
218 Kuwait 26463 T 8 8
219 Kuwait 26464 C 8 8
220 Kuwait 26465 T 8 8
221 Kuwait 26466 G 8 8
222 Kuwait 26467 G 8 8
223 Kuwait 26468 T 8 8
224 Kuwait 26469 C 8 8
225 Kuwait 26470 T 8 8
226 Kuwait 26471 A 8 8
227 Kuwait 26472 A 8 8