National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G I K L M N P R S T V Y
*     2                                  
-     228                                  
?                                        
A     12                                  
C     9                                  
D     3                                  
E     6                                  
F     15         1                        
G     3                                  
I     9                                  
K     6                                  
L     43                 1                
M     3                                  
N     15                                  
P     6                 1         1      
R     9                                  
S     24         1                        
T     12                                  
V     39                                  
Y     12                                  

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Kenya 26245 A 514 514
1 Kenya 26246 T 514 514
2 Kenya 26247 G 514 514
3 Kenya 26248 T 514 514
4 Kenya 26249 A 514 514
5 Kenya 26250 C 514 514
6 Kenya 26251 T 514 514
7 Kenya 26252 C 514 514
8 Kenya 26253 A 514 514
9 Kenya 26254 T 514 514
10 Kenya 26255 T 514 514
11 Kenya 26256 C 514 514
12 Kenya 26257 G 514 514
13 Kenya 26258 T 514 514
14 Kenya 26259 T 514 514
15 Kenya 26260 T 514 514
16 Kenya 26261 C 514 514
17 Kenya 26262 G 514 514
18 Kenya 26263 G 514 514
19 Kenya 26264 A 514 514
20 Kenya 26265 A 514 514
21 Kenya 26266 G 514 514
22 Kenya 26267 A 514 514
23 Kenya 26268 G 514 514
24 Kenya 26269 A 514 514
25 Kenya 26270 C 514 514
26 Kenya 26271 A 514 514
27 Kenya 26272 G 514 514
28 Kenya 26273 G 514 514
29 Kenya 26274 T 514 514
30 Kenya 26275 A 514 514
31 Kenya 26276 C 514 514
32 Kenya 26277 G 514 514
33 Kenya 26278 T 514 514
34 Kenya 26279 T 514 514
35 Kenya 26280 A 514 514
36 Kenya 26281 A 514 514
37 Kenya 26282 T 514 514
38 Kenya 26283 A 514 514
39 Kenya 26284 G 514 514
40 Kenya 26285 T 514 514
41 Kenya 26286 T 514 514
42 Kenya 26287 A 514 514
43 Kenya 26288 A 514 514
44 Kenya 26289 T 514 514
45 Kenya 26290 A 514 514
46 Kenya 26291 G 513 513
47 Kenya 26292 C 513 513
48 Kenya 26293 G 513 513
49 Kenya 26294 T 513 513
50 Kenya 26295 A 513 513
51 Kenya 26296 C 513 513
52 Kenya 26297 T 513 513
53 Kenya 26298 T 513 513
54 Kenya 26299 C 513 513
55 Kenya 26300 T 513 513
56 Kenya 26301 T 513 513
57 Kenya 26302 T 513 513
58 Kenya 26303 T 513 513
59 Kenya 26304 T 513 513
60 Kenya 26305 C 513 513
61 Kenya 26306 T 513 513
62 Kenya 26307 T 513 513
63 Kenya 26308 G 513 513
64 Kenya 26309 C 513 513
65 Kenya 26310 T 513 513
66 Kenya 26311 T 513 513
67 Kenya 26312 T 513 513
68 Kenya 26313 C T 513 512 Phe23Phe
69 Kenya 26314 G 513 513
70 Kenya 26315 T 513 513
71 Kenya 26316 G 513 513
72 Kenya 26317 G 513 513
73 Kenya 26318 T 513 513
74 Kenya 26319 A 513 513
75 Kenya 26320 T 513 513
76 Kenya 26321 T 513 513
77 Kenya 26322 C 513 513
78 Kenya 26323 T 513 513
79 Kenya 26324 T 513 513
80 Kenya 26325 G 513 513
81 Kenya 26326 C 513 513
82 Kenya 26327 T 513 513
83 Kenya 26328 A 513 513
84 Kenya 26329 G 513 513
85 Kenya 26330 T 513 513
86 Kenya 26331 T 513 513
87 Kenya 26332 A 513 513
88 Kenya 26333 C 513 513
89 Kenya 26334 A 513 513
90 Kenya 26335 C 513 513
91 Kenya 26336 T 513 513
92 Kenya 26337 A 513 513
93 Kenya 26338 G 513 513
94 Kenya 26339 C 513 513
95 Kenya 26340 C 513 513
96 Kenya 26341 A 513 513
97 Kenya 26342 T 513 513
98 Kenya 26343 C 513 513
99 Kenya 26344 C 513 513
100 Kenya 26345 T 513 513
101 Kenya 26346 T 513 513
102 Kenya 26347 A 513 513
103 Kenya 26348 C 513 513
104 Kenya 26349 T 513 513
105 Kenya 26350 G 513 513
106 Kenya 26351 C 513 513
107 Kenya 26352 G 513 513
108 Kenya 26353 C 513 513
109 Kenya 26354 T 513 513
110 Kenya 26355 T 513 513
111 Kenya 26356 C 513 513
112 Kenya 26357 G 513 513
113 Kenya 26358 A 513 513
114 Kenya 26359 T 513 513
115 Kenya 26360 T 513 513
116 Kenya 26361 G 513 513
117 Kenya 26362 T 513 513
118 Kenya 26363 G 513 513
119 Kenya 26364 T 513 513
120 Kenya 26365 G 513 513
121 Kenya 26366 C 513 513
122 Kenya 26367 G 513 513
123 Kenya 26368 T 513 513
124 Kenya 26369 A 513 513
125 Kenya 26370 C 513 513
126 Kenya 26371 T 513 513
127 Kenya 26372 G 513 513
128 Kenya 26373 C 513 513
129 Kenya 26374 T 513 513
130 Kenya 26375 G 513 513
131 Kenya 26376 C 513 513
132 Kenya 26377 A 513 513
133 Kenya 26378 A 513 513
134 Kenya 26379 T 513 513
135 Kenya 26380 A 513 513
136 Kenya 26381 T 513 513
137 Kenya 26382 T 513 513
138 Kenya 26383 G 513 513
139 Kenya 26384 T 513 513
140 Kenya 26385 T 513 513
141 Kenya 26386 A 513 513
142 Kenya 26387 A 513 513
143 Kenya 26388 C 513 513
144 Kenya 26389 G 513 513
145 Kenya 26390 T 513 513
146 Kenya 26391 G 513 513
147 Kenya 26392 A 513 513
148 Kenya 26393 G 513 513
149 Kenya 26394 T 513 513
150 Kenya 26395 C 513 513
151 Kenya 26396 T 513 513
152 Kenya 26397 T 513 513
153 Kenya 26398 G 513 513
154 Kenya 26399 T 513 513
155 Kenya 26400 A 513 513
156 Kenya 26401 A 513 513
157 Kenya 26402 A 513 513
158 Kenya 26403 A 513 513
159 Kenya 26404 C 513 513
160 Kenya 26405 C 513 513
161 Kenya 26406 T 513 513
162 Kenya 26407 T 513 513
163 Kenya 26408 C 513 513
164 Kenya 26409 T 513 513
165 Kenya 26410 T 513 513
166 Kenya 26411 T 513 513
167 Kenya 26412 T 513 513
168 Kenya 26413 T 513 513
169 Kenya 26414 A 513 513
170 Kenya 26415 C 513 513
171 Kenya 26416 G 513 513
172 Kenya 26417 T 513 513
173 Kenya 26418 T 513 513
174 Kenya 26419 T 513 513
175 Kenya 26420 A 513 513
176 Kenya 26421 C 513 513
177 Kenya 26422 T 513 513
178 Kenya 26423 C 513 513
179 Kenya 26424 T 513 513
180 Kenya 26425 C 513 513
181 Kenya 26426 G 513 513
182 Kenya 26427 T 513 513
183 Kenya 26428 G 513 513
184 Kenya 26429 T 513 513
185 Kenya 26430 T 513 513
186 Kenya 26431 A 513 513
187 Kenya 26432 A 513 513
188 Kenya 26433 A 513 513
189 Kenya 26434 A 513 513
190 Kenya 26435 A 513 513
191 Kenya 26436 T 513 513
192 Kenya 26437 C 513 513
193 Kenya 26438 T 513 513
194 Kenya 26439 G 513 513
195 Kenya 26440 A 513 513
196 Kenya 26441 A 513 513
197 Kenya 26442 T 513 513
198 Kenya 26443 T 513 513
199 Kenya 26444 C 513 513
200 Kenya 26445 T 513 513
201 Kenya 26446 T 513 513
202 Kenya 26447 C T 513 512 Ser68Phe
203 Kenya 26448 T 513 513
204 Kenya 26449 A 513 513
205 Kenya 26450 G 513 513
206 Kenya 26451 A 513 513
207 Kenya 26452 G 513 513
208 Kenya 26453 T 513 513
209 Kenya 26454 T 513 513
210 Kenya 26455 C T 513 512 Pro71Ser
211 Kenya 26456 C T 513 511 Pro71Leu
212 Kenya 26457 T 513 513
213 Kenya 26458 G 513 513
214 Kenya 26459 A 513 513
215 Kenya 26460 T 513 513
216 Kenya 26461 C 513 513
217 Kenya 26462 T 513 513
218 Kenya 26463 T 513 513
219 Kenya 26464 C T 513 512 Leu74Leu
220 Kenya 26465 T 513 513
221 Kenya 26466 G 513 513
222 Kenya 26467 G 513 513
223 Kenya 26468 T 513 513
224 Kenya 26469 C 513 513
225 Kenya 26470 T 513 513
226 Kenya 26471 A 513 513
227 Kenya 26472 A 513 513