National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G I K L M N P R S T V Y
*     2                                  
-     228                                  
?                                        
A     12                                  
C     9                                  
D     3                                  
E     6                                  
F     15                                  
G     3                                  
I     9                                  
K     6                                  
L     43                                  
M     3                                  
N     15                                  
P     6                                  
R     9                                  
S     24                                  
T     12                                  
V     39                                  
Y     12                                  

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Kazakhstan 26245 A 53 53
1 Kazakhstan 26246 T 53 53
2 Kazakhstan 26247 G 53 53
3 Kazakhstan 26248 T 53 53
4 Kazakhstan 26249 A 53 53
5 Kazakhstan 26250 C 53 53
6 Kazakhstan 26251 T 53 53
7 Kazakhstan 26252 C 53 53
8 Kazakhstan 26253 A 53 53
9 Kazakhstan 26254 T 53 53
10 Kazakhstan 26255 T 53 53
11 Kazakhstan 26256 C 53 53
12 Kazakhstan 26257 G 53 53
13 Kazakhstan 26258 T 53 53
14 Kazakhstan 26259 T 53 53
15 Kazakhstan 26260 T 53 53
16 Kazakhstan 26261 C 53 53
17 Kazakhstan 26262 G 53 53
18 Kazakhstan 26263 G 53 53
19 Kazakhstan 26264 A 53 53
20 Kazakhstan 26265 A 53 53
21 Kazakhstan 26266 G 53 53
22 Kazakhstan 26267 A 53 53
23 Kazakhstan 26268 G 53 53
24 Kazakhstan 26269 A 53 53
25 Kazakhstan 26270 C 53 53
26 Kazakhstan 26271 A 53 53
27 Kazakhstan 26272 G 53 53
28 Kazakhstan 26273 G 53 53
29 Kazakhstan 26274 T 53 53
30 Kazakhstan 26275 A 53 53
31 Kazakhstan 26276 C 53 53
32 Kazakhstan 26277 G 53 53
33 Kazakhstan 26278 T 53 53
34 Kazakhstan 26279 T 53 53
35 Kazakhstan 26280 A 53 53
36 Kazakhstan 26281 A 53 53
37 Kazakhstan 26282 T 53 53
38 Kazakhstan 26283 A 53 53
39 Kazakhstan 26284 G 53 53
40 Kazakhstan 26285 T 53 53
41 Kazakhstan 26286 T 53 53
42 Kazakhstan 26287 A 53 53
43 Kazakhstan 26288 A 53 53
44 Kazakhstan 26289 T 53 53
45 Kazakhstan 26290 A 53 53
46 Kazakhstan 26291 G 53 53
47 Kazakhstan 26292 C 53 53
48 Kazakhstan 26293 G 53 53
49 Kazakhstan 26294 T 53 53
50 Kazakhstan 26295 A 53 53
51 Kazakhstan 26296 C 53 53
52 Kazakhstan 26297 T 53 53
53 Kazakhstan 26298 T 53 53
54 Kazakhstan 26299 C 53 53
55 Kazakhstan 26300 T 53 53
56 Kazakhstan 26301 T 53 53
57 Kazakhstan 26302 T 53 53
58 Kazakhstan 26303 T 53 53
59 Kazakhstan 26304 T 53 53
60 Kazakhstan 26305 C 53 53
61 Kazakhstan 26306 T 53 53
62 Kazakhstan 26307 T 53 53
63 Kazakhstan 26308 G 53 53
64 Kazakhstan 26309 C 53 53
65 Kazakhstan 26310 T 53 53
66 Kazakhstan 26311 T 53 53
67 Kazakhstan 26312 T 53 53
68 Kazakhstan 26313 C 53 53
69 Kazakhstan 26314 G 53 53
70 Kazakhstan 26315 T 53 53
71 Kazakhstan 26316 G 53 53
72 Kazakhstan 26317 G 53 53
73 Kazakhstan 26318 T 53 53
74 Kazakhstan 26319 A 53 53
75 Kazakhstan 26320 T 53 53
76 Kazakhstan 26321 T 53 53
77 Kazakhstan 26322 C 53 53
78 Kazakhstan 26323 T 53 53
79 Kazakhstan 26324 T 53 53
80 Kazakhstan 26325 G 53 53
81 Kazakhstan 26326 C 53 53
82 Kazakhstan 26327 T 53 53
83 Kazakhstan 26328 A 53 53
84 Kazakhstan 26329 G 53 53
85 Kazakhstan 26330 T 53 53
86 Kazakhstan 26331 T 53 53
87 Kazakhstan 26332 A 53 53
88 Kazakhstan 26333 C 53 53
89 Kazakhstan 26334 A 53 53
90 Kazakhstan 26335 C 53 53
91 Kazakhstan 26336 T 53 53
92 Kazakhstan 26337 A 53 53
93 Kazakhstan 26338 G 53 53
94 Kazakhstan 26339 C 53 53
95 Kazakhstan 26340 C 53 53
96 Kazakhstan 26341 A 53 53
97 Kazakhstan 26342 T 53 53
98 Kazakhstan 26343 C 53 53
99 Kazakhstan 26344 C 53 53
100 Kazakhstan 26345 T 53 53
101 Kazakhstan 26346 T 53 53
102 Kazakhstan 26347 A 53 53
103 Kazakhstan 26348 C 53 53
104 Kazakhstan 26349 T 53 53
105 Kazakhstan 26350 G 53 53
106 Kazakhstan 26351 C 53 53
107 Kazakhstan 26352 G 53 53
108 Kazakhstan 26353 C 53 53
109 Kazakhstan 26354 T 53 53
110 Kazakhstan 26355 T 53 53
111 Kazakhstan 26356 C 53 53
112 Kazakhstan 26357 G 53 53
113 Kazakhstan 26358 A 53 53
114 Kazakhstan 26359 T 53 53
115 Kazakhstan 26360 T 53 53
116 Kazakhstan 26361 G 53 53
117 Kazakhstan 26362 T 53 53
118 Kazakhstan 26363 G 53 53
119 Kazakhstan 26364 T 53 53
120 Kazakhstan 26365 G 53 53
121 Kazakhstan 26366 C 53 53
122 Kazakhstan 26367 G 53 53
123 Kazakhstan 26368 T 53 53
124 Kazakhstan 26369 A 53 53
125 Kazakhstan 26370 C 53 53
126 Kazakhstan 26371 T 53 53
127 Kazakhstan 26372 G 53 53
128 Kazakhstan 26373 C 53 53
129 Kazakhstan 26374 T 53 53
130 Kazakhstan 26375 G 53 53
131 Kazakhstan 26376 C 53 53
132 Kazakhstan 26377 A 53 53
133 Kazakhstan 26378 A 53 53
134 Kazakhstan 26379 T 53 53
135 Kazakhstan 26380 A 53 53
136 Kazakhstan 26381 T 53 53
137 Kazakhstan 26382 T 53 53
138 Kazakhstan 26383 G 53 53
139 Kazakhstan 26384 T 53 53
140 Kazakhstan 26385 T 53 53
141 Kazakhstan 26386 A 53 53
142 Kazakhstan 26387 A 53 53
143 Kazakhstan 26388 C 53 53
144 Kazakhstan 26389 G 53 53
145 Kazakhstan 26390 T 53 53
146 Kazakhstan 26391 G 53 53
147 Kazakhstan 26392 A 53 53
148 Kazakhstan 26393 G 53 53
149 Kazakhstan 26394 T 53 53
150 Kazakhstan 26395 C 53 53
151 Kazakhstan 26396 T 53 53
152 Kazakhstan 26397 T 53 53
153 Kazakhstan 26398 G 53 53
154 Kazakhstan 26399 T 53 53
155 Kazakhstan 26400 A 53 53
156 Kazakhstan 26401 A 53 53
157 Kazakhstan 26402 A 53 53
158 Kazakhstan 26403 A 53 53
159 Kazakhstan 26404 C 53 53
160 Kazakhstan 26405 C 53 53
161 Kazakhstan 26406 T 53 53
162 Kazakhstan 26407 T 53 53
163 Kazakhstan 26408 C 53 53
164 Kazakhstan 26409 T 53 53
165 Kazakhstan 26410 T 53 53
166 Kazakhstan 26411 T 53 53
167 Kazakhstan 26412 T 53 53
168 Kazakhstan 26413 T 53 53
169 Kazakhstan 26414 A 53 53
170 Kazakhstan 26415 C 53 53
171 Kazakhstan 26416 G 53 53
172 Kazakhstan 26417 T 53 53
173 Kazakhstan 26418 T 53 53
174 Kazakhstan 26419 T 53 53
175 Kazakhstan 26420 A 53 53
176 Kazakhstan 26421 C 53 53
177 Kazakhstan 26422 T 53 53
178 Kazakhstan 26423 C 53 53
179 Kazakhstan 26424 T 53 53
180 Kazakhstan 26425 C 53 53
181 Kazakhstan 26426 G 53 53
182 Kazakhstan 26427 T 53 53
183 Kazakhstan 26428 G 53 53
184 Kazakhstan 26429 T 53 53
185 Kazakhstan 26430 T 53 53
186 Kazakhstan 26431 A 53 53
187 Kazakhstan 26432 A 53 53
188 Kazakhstan 26433 A 53 53
189 Kazakhstan 26434 A 53 53
190 Kazakhstan 26435 A 53 53
191 Kazakhstan 26436 T 53 53
192 Kazakhstan 26437 C 53 53
193 Kazakhstan 26438 T 53 53
194 Kazakhstan 26439 G 53 53
195 Kazakhstan 26440 A 53 53
196 Kazakhstan 26441 A 53 53
197 Kazakhstan 26442 T 53 53
198 Kazakhstan 26443 T 53 53
199 Kazakhstan 26444 C 53 53
200 Kazakhstan 26445 T 53 53
201 Kazakhstan 26446 T 53 53
202 Kazakhstan 26447 C 53 53
203 Kazakhstan 26448 T 53 53
204 Kazakhstan 26449 A 53 53
205 Kazakhstan 26450 G 53 53
206 Kazakhstan 26451 A 53 53
207 Kazakhstan 26452 G 53 53
208 Kazakhstan 26453 T 53 53
209 Kazakhstan 26454 T 53 53
210 Kazakhstan 26455 C 53 53
211 Kazakhstan 26456 C 53 53
212 Kazakhstan 26457 T 53 53
213 Kazakhstan 26458 G 53 53
214 Kazakhstan 26459 A 53 53
215 Kazakhstan 26460 T 53 53
216 Kazakhstan 26461 C 53 53
217 Kazakhstan 26462 T 53 53
218 Kazakhstan 26463 T 53 53
219 Kazakhstan 26464 C 53 53
220 Kazakhstan 26465 T 53 53
221 Kazakhstan 26466 G 53 53
222 Kazakhstan 26467 G 53 53
223 Kazakhstan 26468 T 53 53
224 Kazakhstan 26469 C 53 53
225 Kazakhstan 26470 T 53 53
226 Kazakhstan 26471 A 53 53
227 Kazakhstan 26472 A 53 53