National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G I K L M N P R S T V Y
*     2                                  
-     228                                  
?                                        
A     12                                  
C     9                                  
D     3                                  
E     6                                  
F     15                                  
G     3                                  
I     9                                  
K     6                                  
L     43                                  
M     3                                  
N     15                                  
P     6                                  
R     9                                  
S     24 1                                
T     12                                  
V     39                                  
Y     12                                  

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Jordan 26245 A 579 579
1 Jordan 26246 T 579 579
2 Jordan 26247 G 579 579
3 Jordan 26248 T 579 579
4 Jordan 26249 A 579 579
5 Jordan 26250 C 579 579
6 Jordan 26251 T 579 579
7 Jordan 26252 C 579 579
8 Jordan 26253 A 579 579
9 Jordan 26254 T 579 579
10 Jordan 26255 T 579 579
11 Jordan 26256 C 579 579
12 Jordan 26257 G 579 579
13 Jordan 26258 T 579 579
14 Jordan 26259 T 579 579
15 Jordan 26260 T 579 579
16 Jordan 26261 C 579 579
17 Jordan 26262 G 579 579
18 Jordan 26263 G 579 579
19 Jordan 26264 A 579 579
20 Jordan 26265 A 579 579
21 Jordan 26266 G 579 579
22 Jordan 26267 A 579 579
23 Jordan 26268 G 579 579
24 Jordan 26269 A 579 579
25 Jordan 26270 C 579 579
26 Jordan 26271 A 579 579
27 Jordan 26272 G 579 579
28 Jordan 26273 G 579 579
29 Jordan 26274 T 579 579
30 Jordan 26275 A 579 579
31 Jordan 26276 C 579 579
32 Jordan 26277 G 579 579
33 Jordan 26278 T 579 579
34 Jordan 26279 T 579 579
35 Jordan 26280 A 579 579
36 Jordan 26281 A 579 579
37 Jordan 26282 T 579 579
38 Jordan 26283 A 579 579
39 Jordan 26284 G 579 579
40 Jordan 26285 T 579 579
41 Jordan 26286 T 579 579
42 Jordan 26287 A 579 579
43 Jordan 26288 A 579 579
44 Jordan 26289 T 579 579
45 Jordan 26290 A 579 579
46 Jordan 26291 G 579 579
47 Jordan 26292 C 579 579
48 Jordan 26293 G 579 579
49 Jordan 26294 T 579 579
50 Jordan 26295 A 579 579
51 Jordan 26296 C 579 579
52 Jordan 26297 T 579 579
53 Jordan 26298 T 579 579
54 Jordan 26299 C 579 579
55 Jordan 26300 T 579 579
56 Jordan 26301 T 579 579
57 Jordan 26302 T 579 579
58 Jordan 26303 T 579 579
59 Jordan 26304 T 579 579
60 Jordan 26305 C 579 579
61 Jordan 26306 T 579 579
62 Jordan 26307 T 579 579
63 Jordan 26308 G 579 579
64 Jordan 26309 C 579 579
65 Jordan 26310 T 579 579
66 Jordan 26311 T 579 579
67 Jordan 26312 T 579 579
68 Jordan 26313 C 579 579
69 Jordan 26314 G 579 579
70 Jordan 26315 T 579 579
71 Jordan 26316 G 579 579
72 Jordan 26317 G 579 579
73 Jordan 26318 T 579 579
74 Jordan 26319 A 579 579
75 Jordan 26320 T 579 579
76 Jordan 26321 T 579 579
77 Jordan 26322 C 579 579
78 Jordan 26323 T 579 579
79 Jordan 26324 T 579 579
80 Jordan 26325 G 579 579
81 Jordan 26326 C 579 579
82 Jordan 26327 T 579 579
83 Jordan 26328 A 579 579
84 Jordan 26329 G 579 579
85 Jordan 26330 T 579 579
86 Jordan 26331 T 579 579
87 Jordan 26332 A 579 579
88 Jordan 26333 C 579 579
89 Jordan 26334 A 579 579
90 Jordan 26335 C 579 579
91 Jordan 26336 T 579 579
92 Jordan 26337 A 579 579
93 Jordan 26338 G 579 579
94 Jordan 26339 C 579 579
95 Jordan 26340 C 579 579
96 Jordan 26341 A 579 579
97 Jordan 26342 T 579 579
98 Jordan 26343 C 579 579
99 Jordan 26344 C 579 579
100 Jordan 26345 T 579 579
101 Jordan 26346 T 579 579
102 Jordan 26347 A 579 579
103 Jordan 26348 C 579 579
104 Jordan 26349 T 579 579
105 Jordan 26350 G 579 579
106 Jordan 26351 C 579 579
107 Jordan 26352 G 579 578
108 Jordan 26353 C 579 578
109 Jordan 26354 T 579 578
110 Jordan 26355 T 579 578
111 Jordan 26356 C 579 578
112 Jordan 26357 G 579 578
113 Jordan 26358 A 579 578
114 Jordan 26359 T 579 578
115 Jordan 26360 T 579 578
116 Jordan 26361 G 579 578
117 Jordan 26362 T 579 578
118 Jordan 26363 G 579 578
119 Jordan 26364 T 579 578
120 Jordan 26365 G 579 578
121 Jordan 26366 C 579 578
122 Jordan 26367 G 579 578
123 Jordan 26368 T 579 578
124 Jordan 26369 A 579 578
125 Jordan 26370 C 579 578
126 Jordan 26371 T 579 578
127 Jordan 26372 G 579 578
128 Jordan 26373 C 579 578
129 Jordan 26374 T 579 578
130 Jordan 26375 G 579 578
131 Jordan 26376 C 579 578
132 Jordan 26377 A 579 578
133 Jordan 26378 A 579 578
134 Jordan 26379 T 579 578
135 Jordan 26380 A 579 579
136 Jordan 26381 T 579 579
137 Jordan 26382 T 579 579
138 Jordan 26383 G 579 579
139 Jordan 26384 T 579 579
140 Jordan 26385 T 579 579
141 Jordan 26386 A 579 579
142 Jordan 26387 A 579 579
143 Jordan 26388 C 579 579
144 Jordan 26389 G 579 579
145 Jordan 26390 T 579 579
146 Jordan 26391 G 579 579
147 Jordan 26392 A 579 579
148 Jordan 26393 G 579 579
149 Jordan 26394 T 579 579
150 Jordan 26395 C 579 579
151 Jordan 26396 T 579 579
152 Jordan 26397 T 579 579
153 Jordan 26398 G 579 579
154 Jordan 26399 T 579 579
155 Jordan 26400 A 579 579
156 Jordan 26401 A 579 579
157 Jordan 26402 A 579 579
158 Jordan 26403 A 579 579
159 Jordan 26404 C 579 579
160 Jordan 26405 C 579 579
161 Jordan 26406 T 579 579
162 Jordan 26407 T 579 579
163 Jordan 26408 C 579 579
164 Jordan 26409 T 579 579
165 Jordan 26410 T 579 579
166 Jordan 26411 T 579 579
167 Jordan 26412 T 579 579
168 Jordan 26413 T 579 579
169 Jordan 26414 A 579 579
170 Jordan 26415 C 579 579
171 Jordan 26416 G 579 579
172 Jordan 26417 T 579 579
173 Jordan 26418 T 579 579
174 Jordan 26419 T 579 579
175 Jordan 26420 A 579 579
176 Jordan 26421 C 579 579
177 Jordan 26422 T 579 579
178 Jordan 26423 C 579 579
179 Jordan 26424 T 579 579
180 Jordan 26425 C 579 579
181 Jordan 26426 G 579 579
182 Jordan 26427 T 579 579
183 Jordan 26428 G 579 579
184 Jordan 26429 T 579 579
185 Jordan 26430 T 579 579
186 Jordan 26431 A 579 579
187 Jordan 26432 A 579 579
188 Jordan 26433 A 579 579
189 Jordan 26434 A 579 579
190 Jordan 26435 A 579 579
191 Jordan 26436 T 579 579
192 Jordan 26437 C 579 579
193 Jordan 26438 T 579 579
194 Jordan 26439 G 579 579
195 Jordan 26440 A 579 579
196 Jordan 26441 A 579 579
197 Jordan 26442 T 579 579
198 Jordan 26443 T 579 579
199 Jordan 26444 C 579 579
200 Jordan 26445 T 579 579
201 Jordan 26446 T G 579 578 Ser68Ala
202 Jordan 26447 C 579 579
203 Jordan 26448 T 579 579
204 Jordan 26449 A 579 579
205 Jordan 26450 G 579 579
206 Jordan 26451 A 579 579
207 Jordan 26452 G 579 579
208 Jordan 26453 T 578 578
209 Jordan 26454 T 578 578
210 Jordan 26455 C 578 578
211 Jordan 26456 C 578 578
212 Jordan 26457 T 578 578
213 Jordan 26458 G 578 578
214 Jordan 26459 A 578 578
215 Jordan 26460 T 578 578
216 Jordan 26461 C 578 578
217 Jordan 26462 T 578 578
218 Jordan 26463 T 578 578
219 Jordan 26464 C 578 578
220 Jordan 26465 T 578 578
221 Jordan 26466 G 578 578
222 Jordan 26467 G 578 578
223 Jordan 26468 T 578 578
224 Jordan 26469 C 578 578
225 Jordan 26470 T 578 578
226 Jordan 26471 A 578 578
227 Jordan 26472 A 578 578