National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G H I K L M N P R S T V Y
*     2                                    
-     226                                    
?                                          
A     12 1                               1  
C     9   1                                
D     3           1                        
E     6     1                              
F     15         2         2         1      
G     3                                    
H                                          
I     9                                    
K     6                 1                  
L     42         4     1   6             2  
M     3                                    
N     15                       2     1 1    
P     6                   1         1      
R     9   1         1 1                    
S     23         3         1         6      
T     12               2                    
V     39 1       2     1                 3  
Y     12                                   2

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Japan 26245 A 17033 17033
1 Japan 26246 T 17033 17033
2 Japan 26247 G 17033 17033
3 Japan 26248 T 17033 17033
4 Japan 26249 A 17033 17033
5 Japan 26250 C 17033 17033
6 Japan 26251 T 17033 17033
7 Japan 26252 C T 17033 17032 Ser3Leu
8 Japan 26253 A 17033 17033
9 Japan 26254 T 17033 17033
10 Japan 26255 T 17033 17033
11 Japan 26256 C T 17033 17029 Phe4Phe
12 Japan 26257 G 17033 17033
13 Japan 26258 T 17033 17033
14 Japan 26259 T 17033 17033
15 Japan 26260 T 17033 17033
16 Japan 26261 C 17033 17033
17 Japan 26262 G T,A,C 17033 17015 Ser6Ser-p.Ser6Ser
18 Japan 26263 G 17033 17033
19 Japan 26264 A 17033 17033
20 Japan 26265 A 17033 17033
21 Japan 26266 G 17033 17033
22 Japan 26267 A 17033 17033
23 Japan 26268 G T 17033 17030 Glu8Asp
24 Japan 26269 A 17033 17033
25 Japan 26270 C T 17033 17032 Thr9Ile
26 Japan 26271 A 17033 17033
27 Japan 26272 G 17033 17033
28 Japan 26273 G 17033 17033
29 Japan 26274 T 17033 17033
30 Japan 26275 A 17033 17033
31 Japan 26276 C 17033 17033
32 Japan 26277 G 17033 17033
33 Japan 26278 T 17033 17033
34 Japan 26279 T 17033 17033
35 Japan 26280 A 17033 17033
36 Japan 26281 A 17033 17033
37 Japan 26282 T 17033 17033
38 Japan 26283 A 17033 17033
39 Japan 26284 G 17033 17033
40 Japan 26285 T 17033 17033
41 Japan 26286 T C 17033 17032 Val14Val
42 Japan 26287 A 17033 17033
43 Japan 26288 A 17033 17033
44 Japan 26289 T 17033 17033
45 Japan 26290 A 17033 17033
46 Japan 26291 G 17032 17032
47 Japan 26292 C 17032 17032
48 Japan 26293 G 17032 17032
49 Japan 26294 T 17032 17032
50 Japan 26295 A 17032 17032
51 Japan 26296 C 17032 17032
52 Japan 26297 T 17032 17032
53 Japan 26298 T C 17032 17031 Leu18Leu
54 Japan 26299 C 17032 17032
55 Japan 26300 T 17032 17032
56 Japan 26301 T G 17032 17031 Leu19Leu
57 Japan 26302 T 17032 17032
58 Japan 26303 T 17032 17032
59 Japan 26304 T 17032 17032
60 Japan 26305 C T,G 17032 17019 Leu21Phe-p.Leu21Val
61 Japan 26306 T 17032 17032
62 Japan 26307 T 17032 17032
63 Japan 26308 G 17032 17032
64 Japan 26309 C 17032 17032
65 Japan 26310 T 17032 17032
66 Japan 26311 T 17032 17032
67 Japan 26312 T 17032 17032
68 Japan 26313 C T 17032 17031 Phe23Phe
69 Japan 26314 G 17032 17032
70 Japan 26315 T 17032 17032
71 Japan 26316 G 17032 17032
72 Japan 26317 G 17032 17032
73 Japan 26318 T 17032 17032
74 Japan 26319 A 17032 17032
75 Japan 26320 T 17032 17032
76 Japan 26321 T C 17032 17031 Phe26Ser
77 Japan 26322 C A 17032 17025 Phe26Leu
78 Japan 26323 T 17032 17032
79 Japan 26324 T 17032 17032
80 Japan 26325 G T 17032 17027 Leu27Phe
81 Japan 26326 C 17032 17032
82 Japan 26327 T 17032 17032
83 Japan 26328 A 17032 17032
84 Japan 26329 G 17032 17032
85 Japan 26330 T 17032 17032
86 Japan 26331 T 17032 17032
87 Japan 26332 A 17032 17032
88 Japan 26333 C T 17032 17026 Thr30Ile
89 Japan 26334 A 17032 17032
90 Japan 26335 C 17032 17032
91 Japan 26336 T 17032 17032
92 Japan 26337 A 17032 17032
93 Japan 26338 G 17032 17032
94 Japan 26339 C 17032 17032
95 Japan 26340 C T 17032 17031 Ala32Ala
96 Japan 26341 A 17032 17032
97 Japan 26342 T 17030 17030
98 Japan 26343 C 17030 17030
99 Japan 26344 C 17030 17030
100 Japan 26345 T 17030 17030
101 Japan 26346 T 17030 17030
102 Japan 26347 A 17030 17030
103 Japan 26348 C 17030 17030
104 Japan 26349 T 17030 17030
105 Japan 26350 G 17030 17029
106 Japan 26351 C T 17030 17028 Ala36Val
107 Japan 26352 G 17030 17029
108 Japan 26353 C T 17030 17028 Leu37Phe
109 Japan 26354 T 17030 17029
110 Japan 26355 T G 17030 17028 Leu37Leu
111 Japan 26356 C 17030 17029
112 Japan 26357 G 17030 17030
113 Japan 26358 A 17030 17029
114 Japan 26359 T 17030 17029
115 Japan 26360 T 17030 17030
116 Japan 26361 G 17030 17030
117 Japan 26362 T 17030 17030
118 Japan 26363 G 17030 17030
119 Japan 26364 T 17030 17030
120 Japan 26365 G 17030 17030
121 Japan 26366 C 17030 17030
122 Japan 26367 G 17030 17030
123 Japan 26368 T 17030 17030
124 Japan 26369 A 17030 17030
125 Japan 26370 C 17030 17030
126 Japan 26371 T 17030 17030
127 Japan 26372 G 17030 17030
128 Japan 26373 C 17030 17030
129 Japan 26374 T 17030 17030
130 Japan 26375 G 17030 17030
131 Japan 26376 C T 17030 17029 Cys44Cys
132 Japan 26377 A 17030 17030
133 Japan 26378 A 17030 17030
134 Japan 26379 T 17030 17030
135 Japan 26380 A 17030 17030
136 Japan 26381 T 17030 17030
137 Japan 26382 T 17030 17030
138 Japan 26383 G T 17030 17027 Val47Phe
139 Japan 26384 T 17029 17029
140 Japan 26385 T 17029 17029
141 Japan 26386 A 17029 17029
142 Japan 26387 A 17029 17029
143 Japan 26388 C T 17029 17028 Asn48Asn
144 Japan 26389 G 17029 17029
145 Japan 26390 T 17029 17029
146 Japan 26391 G 17029 17029
147 Japan 26392 A 17029 17029
148 Japan 26393 G 17029 17029
149 Japan 26394 T 17029 17029
150 Japan 26395 C 17029 17029
151 Japan 26396 T 17029 17029
152 Japan 26397 T 17029 17029
153 Japan 26398 G 17029 17029
154 Japan 26399 T 17029 17029
155 Japan 26400 A 17029 17029
156 Japan 26401 A 17029 17029
157 Japan 26402 A 17029 17029
158 Japan 26403 A 17029 17029
159 Japan 26404 C 17029 17029
160 Japan 26405 C 17029 17029
161 Japan 26406 T 17029 17029
162 Japan 26407 T 17029 17029
163 Japan 26408 C T 17029 17026 Ser55Phe
164 Japan 26409 T 17029 17029
165 Japan 26410 T C 17029 17028 Phe56Leu
166 Japan 26411 T 17029 17029
167 Japan 26412 T 17029 17029
168 Japan 26413 T 17029 17029
169 Japan 26414 A 17029 17029
170 Japan 26415 C T 17029 17028 Tyr57Tyr
171 Japan 26416 G 17029 17029
172 Japan 26417 T 17029 17029
173 Japan 26418 T 17029 17029
174 Japan 26419 T 17029 17029
175 Japan 26420 A 17029 17029
176 Japan 26421 C T 17029 17028 Tyr59Tyr
177 Japan 26422 T 17029 17029
178 Japan 26423 C 17029 17029
179 Japan 26424 T G 17029 17028 Ser60Ser
180 Japan 26425 C T 17029 17027 Arg61Cys
181 Japan 26426 G A 17029 17028 Arg61His
182 Japan 26427 T 17029 17029
183 Japan 26428 G T 17029 16987 Val62Phe
184 Japan 26429 T 17029 17029
185 Japan 26430 T 17029 17029
186 Japan 26431 A 17029 17028
187 Japan 26432 A 17029 17029
188 Japan 26433 A G 17029 17028 Lys63Lys
189 Japan 26434 A 17029 17029
190 Japan 26435 A G 17029 17027 Asn64Ser
191 Japan 26436 T C 17029 17028 Asn64Asn
192 Japan 26437 C 17029 17029
193 Japan 26438 T 17029 17029
194 Japan 26439 G T 17029 17028 Leu65Leu
195 Japan 26440 A 17029 17029
196 Japan 26441 A C 17029 17028 Asn66Thr
197 Japan 26442 T 17029 17029
198 Japan 26443 T 17029 17029
199 Japan 26444 C T 17029 17027 Ser67Phe
200 Japan 26445 T C,A 17029 17027 Ser67Ser-p.Ser67Ser
201 Japan 26446 T 17029 17029
202 Japan 26447 C T 17029 16986 Ser68Phe
203 Japan 26448 T 17029 17029
204 Japan 26449 A 17029 17029
205 Japan 26450 G T 17029 17028 Arg69Ile
206 Japan 26451 A 17029 17029
207 Japan 26452 G 17029 17029
208 Japan 26453 T C 17029 17027 Val70Ala
209 Japan 26454 T 17029 17029
210 Japan 26455 C T 17029 17028 Pro71Ser
211 Japan 26456 C T 17029 17016 Pro71Leu
212 Japan 26457 T 17029 17029
213 Japan 26458 G 17029 17029
214 Japan 26459 A G 17029 17028 Asp72Gly
215 Japan 26460 T 17029 17029
216 Japan 26461 C A,T,G 17029 17010 Leu73Phe-p.Leu73Val
217 Japan 26462 T 17029 17029
218 Japan 26463 T C 17029 17028 Leu73Leu
219 Japan 26464 C T 17029 17023 Leu74Leu
220 Japan 26465 T 17029 17029
221 Japan 26466 G 17028 17028
222 Japan 26467 G A 17028 17027 Val75Ile
223 Japan 26468 T 17028 17028
224 Japan 26469 C T,A 17028 17024 Val75Val-p.Val75Val
225 Japan 26470 T 17028 17028
226 Japan 26471 A 17028 17028
227 Japan 26472 A 17028 17028