National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G I K L M N P R S T V Y
*     2                                  
-     228                                  
?                                        
A     12                                  
C     9                                  
D     3                                  
E     6                                  
F     15         1                        
G     3                                  
I     9                                  
K     6                                  
L     43                                  
M     3                                  
N     15                                  
P     6                                  
R     9                                  
S     24                                  
T     12                                  
V     39                                  
Y     12                                  

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Jamaica 26245 A 13 13
1 Jamaica 26246 T 13 13
2 Jamaica 26247 G 13 13
3 Jamaica 26248 T 13 13
4 Jamaica 26249 A 13 13
5 Jamaica 26250 C 13 13
6 Jamaica 26251 T 13 13
7 Jamaica 26252 C 13 13
8 Jamaica 26253 A 13 13
9 Jamaica 26254 T 13 13
10 Jamaica 26255 T 13 13
11 Jamaica 26256 C T 13 12 Phe4Phe
12 Jamaica 26257 G 13 13
13 Jamaica 26258 T 13 13
14 Jamaica 26259 T 13 13
15 Jamaica 26260 T 13 13
16 Jamaica 26261 C 13 13
17 Jamaica 26262 G 13 13
18 Jamaica 26263 G 13 13
19 Jamaica 26264 A 13 13
20 Jamaica 26265 A 13 13
21 Jamaica 26266 G 13 13
22 Jamaica 26267 A 13 13
23 Jamaica 26268 G 13 13
24 Jamaica 26269 A 13 13
25 Jamaica 26270 C 13 13
26 Jamaica 26271 A 13 13
27 Jamaica 26272 G 13 13
28 Jamaica 26273 G 13 13
29 Jamaica 26274 T 13 13
30 Jamaica 26275 A 13 13
31 Jamaica 26276 C 13 13
32 Jamaica 26277 G 13 13
33 Jamaica 26278 T 13 13
34 Jamaica 26279 T 13 13
35 Jamaica 26280 A 13 13
36 Jamaica 26281 A 13 13
37 Jamaica 26282 T 13 13
38 Jamaica 26283 A 13 13
39 Jamaica 26284 G 13 13
40 Jamaica 26285 T 13 13
41 Jamaica 26286 T 13 13
42 Jamaica 26287 A 13 13
43 Jamaica 26288 A 13 13
44 Jamaica 26289 T 13 13
45 Jamaica 26290 A 13 13
46 Jamaica 26291 G 13 13
47 Jamaica 26292 C 13 13
48 Jamaica 26293 G 13 13
49 Jamaica 26294 T 13 13
50 Jamaica 26295 A 13 13
51 Jamaica 26296 C 13 13
52 Jamaica 26297 T 13 13
53 Jamaica 26298 T 13 13
54 Jamaica 26299 C 13 13
55 Jamaica 26300 T 13 13
56 Jamaica 26301 T 13 13
57 Jamaica 26302 T 13 13
58 Jamaica 26303 T 13 13
59 Jamaica 26304 T 13 13
60 Jamaica 26305 C 13 13
61 Jamaica 26306 T 13 13
62 Jamaica 26307 T 13 13
63 Jamaica 26308 G 13 13
64 Jamaica 26309 C 13 13
65 Jamaica 26310 T 13 13
66 Jamaica 26311 T 13 13
67 Jamaica 26312 T 13 13
68 Jamaica 26313 C 13 13
69 Jamaica 26314 G 13 13
70 Jamaica 26315 T 13 13
71 Jamaica 26316 G 13 13
72 Jamaica 26317 G 13 13
73 Jamaica 26318 T 13 13
74 Jamaica 26319 A 13 13
75 Jamaica 26320 T 13 13
76 Jamaica 26321 T 13 13
77 Jamaica 26322 C 13 13
78 Jamaica 26323 T 13 13
79 Jamaica 26324 T 13 13
80 Jamaica 26325 G 13 13
81 Jamaica 26326 C 13 13
82 Jamaica 26327 T 13 13
83 Jamaica 26328 A 13 13
84 Jamaica 26329 G 13 13
85 Jamaica 26330 T 13 13
86 Jamaica 26331 T 13 13
87 Jamaica 26332 A 13 13
88 Jamaica 26333 C 13 13
89 Jamaica 26334 A 13 13
90 Jamaica 26335 C 13 13
91 Jamaica 26336 T 13 13
92 Jamaica 26337 A 13 13
93 Jamaica 26338 G 13 13
94 Jamaica 26339 C 13 13
95 Jamaica 26340 C 13 13
96 Jamaica 26341 A 13 13
97 Jamaica 26342 T 13 13
98 Jamaica 26343 C 13 13
99 Jamaica 26344 C 13 13
100 Jamaica 26345 T 13 13
101 Jamaica 26346 T 13 13
102 Jamaica 26347 A 13 13
103 Jamaica 26348 C 13 13
104 Jamaica 26349 T 13 13
105 Jamaica 26350 G 13 13
106 Jamaica 26351 C 13 13
107 Jamaica 26352 G 13 13
108 Jamaica 26353 C 13 13
109 Jamaica 26354 T 13 13
110 Jamaica 26355 T 13 13
111 Jamaica 26356 C 13 13
112 Jamaica 26357 G 13 13
113 Jamaica 26358 A 13 13
114 Jamaica 26359 T 13 13
115 Jamaica 26360 T 13 13
116 Jamaica 26361 G 13 13
117 Jamaica 26362 T 13 13
118 Jamaica 26363 G 13 13
119 Jamaica 26364 T 13 13
120 Jamaica 26365 G 13 13
121 Jamaica 26366 C 13 13
122 Jamaica 26367 G 13 13
123 Jamaica 26368 T 13 13
124 Jamaica 26369 A 13 13
125 Jamaica 26370 C 13 13
126 Jamaica 26371 T 13 13
127 Jamaica 26372 G 13 13
128 Jamaica 26373 C 13 13
129 Jamaica 26374 T 13 13
130 Jamaica 26375 G 13 13
131 Jamaica 26376 C 13 13
132 Jamaica 26377 A 13 13
133 Jamaica 26378 A 13 13
134 Jamaica 26379 T 13 13
135 Jamaica 26380 A 13 13
136 Jamaica 26381 T 13 13
137 Jamaica 26382 T 13 13
138 Jamaica 26383 G 13 13
139 Jamaica 26384 T 13 13
140 Jamaica 26385 T 13 13
141 Jamaica 26386 A 13 13
142 Jamaica 26387 A 13 13
143 Jamaica 26388 C 13 13
144 Jamaica 26389 G 13 13
145 Jamaica 26390 T 13 13
146 Jamaica 26391 G 13 13
147 Jamaica 26392 A 13 13
148 Jamaica 26393 G 13 13
149 Jamaica 26394 T 13 13
150 Jamaica 26395 C 13 13
151 Jamaica 26396 T 13 13
152 Jamaica 26397 T 13 13
153 Jamaica 26398 G 13 13
154 Jamaica 26399 T 13 13
155 Jamaica 26400 A 13 13
156 Jamaica 26401 A 13 13
157 Jamaica 26402 A 13 13
158 Jamaica 26403 A 13 13
159 Jamaica 26404 C 13 13
160 Jamaica 26405 C 13 13
161 Jamaica 26406 T 13 13
162 Jamaica 26407 T 13 13
163 Jamaica 26408 C 13 13
164 Jamaica 26409 T 13 13
165 Jamaica 26410 T 13 13
166 Jamaica 26411 T 13 13
167 Jamaica 26412 T 13 13
168 Jamaica 26413 T 13 13
169 Jamaica 26414 A 13 13
170 Jamaica 26415 C 13 13
171 Jamaica 26416 G 13 13
172 Jamaica 26417 T 13 13
173 Jamaica 26418 T 13 13
174 Jamaica 26419 T 13 13
175 Jamaica 26420 A 13 13
176 Jamaica 26421 C 13 13
177 Jamaica 26422 T 13 13
178 Jamaica 26423 C 13 13
179 Jamaica 26424 T 13 13
180 Jamaica 26425 C 13 13
181 Jamaica 26426 G 13 13
182 Jamaica 26427 T 13 13
183 Jamaica 26428 G 13 13
184 Jamaica 26429 T 13 13
185 Jamaica 26430 T 13 13
186 Jamaica 26431 A 13 13
187 Jamaica 26432 A 13 13
188 Jamaica 26433 A 13 13
189 Jamaica 26434 A 13 13
190 Jamaica 26435 A 13 13
191 Jamaica 26436 T 13 13
192 Jamaica 26437 C 13 13
193 Jamaica 26438 T 13 13
194 Jamaica 26439 G 13 13
195 Jamaica 26440 A 13 13
196 Jamaica 26441 A 13 13
197 Jamaica 26442 T 13 13
198 Jamaica 26443 T 13 13
199 Jamaica 26444 C 13 13
200 Jamaica 26445 T 13 13
201 Jamaica 26446 T 13 13
202 Jamaica 26447 C 13 13
203 Jamaica 26448 T 13 13
204 Jamaica 26449 A 13 13
205 Jamaica 26450 G 13 13
206 Jamaica 26451 A 13 13
207 Jamaica 26452 G 13 13
208 Jamaica 26453 T 13 13
209 Jamaica 26454 T 13 13
210 Jamaica 26455 C 13 13
211 Jamaica 26456 C 13 13
212 Jamaica 26457 T 13 13
213 Jamaica 26458 G 13 13
214 Jamaica 26459 A 13 13
215 Jamaica 26460 T 13 13
216 Jamaica 26461 C 13 13
217 Jamaica 26462 T 13 13
218 Jamaica 26463 T 13 13
219 Jamaica 26464 C 13 13
220 Jamaica 26465 T 13 13
221 Jamaica 26466 G 13 13
222 Jamaica 26467 G 13 13
223 Jamaica 26468 T 13 13
224 Jamaica 26469 C 13 13
225 Jamaica 26470 T 13 13
226 Jamaica 26471 A 13 13
227 Jamaica 26472 A 13 13