National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G I K L M N P R S T V W Y
*     2                                    
-     228                                    
?                                          
A     12                           1   2    
C     9                                    
D     3                                    
E     6                                    
F     15         2                 1        
G     3                                    
I     9                                    
K     6                                    
L     43         2       4 1   1         1  
M     3                                    
N     15                                    
P     6 1               1     1            
R     9             1                      
S     24         1                 2        
T     12             2                      
V     39 1       2       1 1           1    
W                                          
Y     12   1                                

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Italy 26245 A 2959 2959
1 Italy 26246 T 2959 2959
2 Italy 26247 G 2959 2959
3 Italy 26248 T 2960 2960
4 Italy 26249 A 2960 2960
5 Italy 26250 C 2960 2960
6 Italy 26251 T 2960 2960
7 Italy 26252 C 2960 2960
8 Italy 26253 A T 2960 2959 Ser3Ser
9 Italy 26254 T 2960 2960
10 Italy 26255 T 2960 2960
11 Italy 26256 C T 2960 2946 Phe4Phe
12 Italy 26257 G 2960 2960
13 Italy 26258 T 2960 2960
14 Italy 26259 T 2960 2960
15 Italy 26260 T 2960 2960
16 Italy 26261 C 2960 2960
17 Italy 26262 G A 2960 2959 Ser6Ser
18 Italy 26263 G 2960 2960
19 Italy 26264 A 2960 2960
20 Italy 26265 A 2960 2960
21 Italy 26266 G 2960 2960
22 Italy 26267 A 2960 2960
23 Italy 26268 G 2960 2960
24 Italy 26269 A 2960 2960
25 Italy 26270 C T 2960 2956 Thr9Ile
26 Italy 26271 A 2960 2960
27 Italy 26272 G 2960 2960
28 Italy 26273 G 2961 2961
29 Italy 26274 T 2961 2961
30 Italy 26275 A 2961 2961
31 Italy 26276 C 2961 2961
32 Italy 26277 G 2961 2961
33 Italy 26278 T C 2961 2960 Leu12Leu
34 Italy 26279 T 2961 2961
35 Italy 26280 A 2961 2961
36 Italy 26281 A 2961 2961
37 Italy 26282 T 2961 2961
38 Italy 26283 A 2960 2960
39 Italy 26284 G 2961 2960
40 Italy 26285 T 2961 2961
41 Italy 26286 T 2961 2961
42 Italy 26287 A 2961 2961
43 Italy 26288 A 2961 2961
44 Italy 26289 T 2961 2961
45 Italy 26290 A 2961 2961
46 Italy 26291 G 2960 2960
47 Italy 26292 C 2960 2960
48 Italy 26293 G 2960 2960
49 Italy 26294 T 2960 2960
50 Italy 26295 A 2960 2960
51 Italy 26296 C 2960 2960
52 Italy 26297 T 2960 2960
53 Italy 26298 T 2960 2960
54 Italy 26299 C 2960 2960
55 Italy 26300 T 2960 2960
56 Italy 26301 T 2960 2960
57 Italy 26302 T 2960 2960
58 Italy 26303 T 2960 2960
59 Italy 26304 T 2960 2960
60 Italy 26305 C T 2957 2955 Leu21Phe
61 Italy 26306 T 2957 2957
62 Italy 26307 T 2957 2957
63 Italy 26308 G 2957 2957
64 Italy 26309 C T 2957 2956 Ala22Val
65 Italy 26310 T 2956 2956
66 Italy 26311 T 2956 2956
67 Italy 26312 T 2956 2956
68 Italy 26313 C T 2956 2954 Phe23Phe
69 Italy 26314 G A 2956 2950 Val24Met
70 Italy 26315 T 2956 2956
71 Italy 26316 G 2956 2956
72 Italy 26317 G 2956 2956
73 Italy 26318 T 2956 2956
74 Italy 26319 A G 2956 2950 Val25Val
75 Italy 26320 T 2956 2955
76 Italy 26321 T C 2956 2953 Phe26Ser
77 Italy 26322 C 2956 2956
78 Italy 26323 T 2956 2956
79 Italy 26324 T 2956 2956
80 Italy 26325 G 2956 2956
81 Italy 26326 C 2956 2956
82 Italy 26327 T 2956 2956
83 Italy 26328 A 2956 2956
84 Italy 26329 G 2956 2956
85 Italy 26330 T 2956 2956
86 Italy 26331 T 2956 2956
87 Italy 26332 A 2956 2956
88 Italy 26333 C T 2956 2955 Thr30Ile
89 Italy 26334 A 2956 2956
90 Italy 26335 C 2956 2956
91 Italy 26336 T C 2956 2955 Leu31Pro
92 Italy 26337 A 2956 2956
93 Italy 26338 G 2956 2956
94 Italy 26339 C 2956 2956
95 Italy 26340 C 2956 2956
96 Italy 26341 A 2956 2956
97 Italy 26342 T 2956 2956
98 Italy 26343 C 2956 2956
99 Italy 26344 C 2956 2956
100 Italy 26345 T 2956 2956
101 Italy 26346 T 2956 2956
102 Italy 26347 A 2956 2956
103 Italy 26348 C 2956 2956
104 Italy 26349 T 2956 2956
105 Italy 26350 G 2956 2956
106 Italy 26351 C T 2956 2955 Ala36Val
107 Italy 26352 G 2956 2956
108 Italy 26353 C 2956 2956
109 Italy 26354 T 2956 2955
110 Italy 26355 T 2956 2956
111 Italy 26356 C 2956 2956
112 Italy 26357 G 2956 2956
113 Italy 26358 A 2956 2955
114 Italy 26359 T A 2956 2952 Leu39Met
115 Italy 26360 T G 2956 2954 Leu39Trp
116 Italy 26361 G 2956 2955
117 Italy 26362 T 2956 2955
118 Italy 26363 G 2956 2955
119 Italy 26364 T 2959 2958
120 Italy 26365 G T 2959 2956 Ala41Ser
121 Italy 26366 C 2959 2958
122 Italy 26367 G 2959 2958
123 Italy 26368 T 2959 2958
124 Italy 26369 A G 2959 2951 Tyr42Cys
125 Italy 26370 C 2959 2954
126 Italy 26371 T 2959 2953
127 Italy 26372 G 2959 2954
128 Italy 26373 C 2959 2954
129 Italy 26374 T 2959 2955
130 Italy 26375 G 2959 2958
131 Italy 26376 C 2959 2958
132 Italy 26377 A 2959 2958
133 Italy 26378 A 2959 2958
134 Italy 26379 T 2959 2958
135 Italy 26380 A 2959 2958
136 Italy 26381 T 2959 2958
137 Italy 26382 T 2959 2955
138 Italy 26383 G 2959 2958
139 Italy 26384 T C 2959 2957 Val47Ala
140 Italy 26385 T 2959 2958
141 Italy 26386 A 2959 2959
142 Italy 26387 A 2959 2959
143 Italy 26388 C 2959 2959
144 Italy 26389 G T 2959 2958 Val49Leu
145 Italy 26390 T 2959 2959
146 Italy 26391 G 2959 2959
147 Italy 26392 A 2959 2959
148 Italy 26393 G 2959 2959
149 Italy 26394 T 2959 2959
150 Italy 26395 C 2959 2958
151 Italy 26396 T 2959 2959
152 Italy 26397 T 2959 2959
153 Italy 26398 G 2959 2959
154 Italy 26399 T 2959 2959
155 Italy 26400 A 2959 2959
156 Italy 26401 A 2959 2959
157 Italy 26402 A 2959 2959
158 Italy 26403 A 2959 2959
159 Italy 26404 C 2959 2959
160 Italy 26405 C 2959 2959
161 Italy 26406 T 2959 2959
162 Italy 26407 T 2959 2959
163 Italy 26408 C 2959 2959
164 Italy 26409 T 2959 2959
165 Italy 26410 T 2959 2959
166 Italy 26411 T 2959 2959
167 Italy 26412 T 2959 2959
168 Italy 26413 T 2959 2959
169 Italy 26414 A 2959 2959
170 Italy 26415 C 2959 2959
171 Italy 26416 G T 2959 2958 Val58Phe
172 Italy 26417 T 2959 2959
173 Italy 26418 T 2955 2955
174 Italy 26419 T 2954 2954
175 Italy 26420 A 2954 2954
176 Italy 26421 C 2954 2954
177 Italy 26422 T 2954 2954
178 Italy 26423 C 2954 2954
179 Italy 26424 T 2954 2954
180 Italy 26425 C 2954 2954
181 Italy 26426 G 2954 2954
182 Italy 26427 T 2954 2954
183 Italy 26428 G T 2954 2953 Val62Phe
184 Italy 26429 T 2954 2954
185 Italy 26430 T 2954 2954
186 Italy 26431 A 2954 2954
187 Italy 26432 A 2954 2954
188 Italy 26433 A 2954 2954
189 Italy 26434 A 2954 2954
190 Italy 26435 A 2954 2954
191 Italy 26436 T 2954 2954
192 Italy 26437 C 2954 2954
193 Italy 26438 T 2954 2954
194 Italy 26439 G T 2954 2949 Leu65Leu
195 Italy 26440 A 2954 2954
196 Italy 26441 A 2954 2954
197 Italy 26442 T 2954 2954
198 Italy 26443 T 2954 2954
199 Italy 26444 C 2954 2954
200 Italy 26445 T 2954 2954
201 Italy 26446 T 2954 2954
202 Italy 26447 C T 2954 2948 Ser68Phe
203 Italy 26448 T 2952 2952
204 Italy 26449 A 2952 2952
205 Italy 26450 G T 2952 2951 Arg69Ile
206 Italy 26451 A 2952 2952
207 Italy 26452 G 2952 2952
208 Italy 26453 T 2951 2951
209 Italy 26454 T 2951 2951
210 Italy 26455 C G 2951 2945 Pro71Ala
211 Italy 26456 C T 2951 2942 Pro71Leu
212 Italy 26457 T A 2951 2945 Pro71Pro
213 Italy 26458 G 2951 2951
214 Italy 26459 A 2951 2951
215 Italy 26460 T 2951 2951
216 Italy 26461 C T 2950 2949 Leu73Phe
217 Italy 26462 T 2950 2950
218 Italy 26463 T C 2950 2949 Leu73Leu
219 Italy 26464 C T 2950 2949 Leu74Leu
220 Italy 26465 T 2950 2950
221 Italy 26466 G 2944 2944
222 Italy 26467 G 2944 2944
223 Italy 26468 T 2944 2944
224 Italy 26469 C 2944 2944
225 Italy 26470 T 2944 2944
226 Italy 26471 A 2944 2944
227 Italy 26472 A 2944 2944