National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.
Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G I K L M N P R S T V Y
*     2                                  
-     228                                  
?                                        
A     12 1                                
C     9         1                        
D     3                                  
E     6                                  
F     15         2       1                
G     3                                  
I     9                                  
K     6                                  
L     43         1   1   1                
M     3                                  
N     15                                  
P     6                 1                
R     9                                  
S     24         1             1   1      
T     12 1           1                    
V     39         1                     3  
Y     12                                  

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Ireland 26245 A 1972 1972
1 Ireland 26246 T 1972 1972
2 Ireland 26247 G 1972 1972
3 Ireland 26248 T 1972 1972
4 Ireland 26249 A 1972 1972
5 Ireland 26250 C 1972 1972
6 Ireland 26251 T 1972 1972
7 Ireland 26252 C 1972 1972
8 Ireland 26253 A 1972 1972
9 Ireland 26254 T 1972 1972
10 Ireland 26255 T 1972 1972
11 Ireland 26256 C T 1972 1964 Phe4Phe
12 Ireland 26257 G 1972 1972
13 Ireland 26258 T 1972 1972
14 Ireland 26259 T 1972 1972
15 Ireland 26260 T 1972 1972
16 Ireland 26261 C 1972 1972
17 Ireland 26262 G 1972 1972
18 Ireland 26263 G 1972 1972
19 Ireland 26264 A 1972 1972
20 Ireland 26265 A 1972 1972
21 Ireland 26266 G 1972 1972
22 Ireland 26267 A 1972 1972
23 Ireland 26268 G 1972 1972
24 Ireland 26269 A 1972 1972
25 Ireland 26270 C T 1972 1971 Thr9Ile
26 Ireland 26271 A 1972 1972
27 Ireland 26272 G 1972 1972
28 Ireland 26273 G 1972 1972
29 Ireland 26274 T 1972 1972
30 Ireland 26275 A G 1972 1971 Thr11Ala
31 Ireland 26276 C 1972 1972
32 Ireland 26277 G 1972 1972
33 Ireland 26278 T 1972 1972
34 Ireland 26279 T 1972 1972
35 Ireland 26280 A 1972 1972
36 Ireland 26281 A 1972 1972
37 Ireland 26282 T 1972 1972
38 Ireland 26283 A 1972 1972
39 Ireland 26284 G 1972 1972
40 Ireland 26285 T 1972 1972
41 Ireland 26286 T C 1972 1971 Val14Val
42 Ireland 26287 A 1972 1972
43 Ireland 26288 A 1972 1972
44 Ireland 26289 T 1972 1972
45 Ireland 26290 A 1972 1972
46 Ireland 26291 G 1972 1972
47 Ireland 26292 C 1972 1972
48 Ireland 26293 G 1972 1972
49 Ireland 26294 T 1972 1972
50 Ireland 26295 A 1972 1972
51 Ireland 26296 C 1972 1972
52 Ireland 26297 T 1972 1972
53 Ireland 26298 T 1972 1972
54 Ireland 26299 C 1972 1972
55 Ireland 26300 T 1972 1972
56 Ireland 26301 T 1972 1972
57 Ireland 26302 T 1972 1972
58 Ireland 26303 T 1972 1972
59 Ireland 26304 T 1972 1972
60 Ireland 26305 C A 1972 1967 Leu21Ile
61 Ireland 26306 T 1972 1972
62 Ireland 26307 T 1972 1972
63 Ireland 26308 G 1972 1972
64 Ireland 26309 C 1972 1972
65 Ireland 26310 T 1972 1972
66 Ireland 26311 T 1972 1972
67 Ireland 26312 T 1972 1972
68 Ireland 26313 C 1972 1972
69 Ireland 26314 G 1972 1972
70 Ireland 26315 T 1972 1972
71 Ireland 26316 G 1972 1971
72 Ireland 26317 G 1972 1971
73 Ireland 26318 T 1972 1971
74 Ireland 26319 A G 1972 1955 Val25Val
75 Ireland 26320 T 1972 1971
76 Ireland 26321 T 1972 1971
77 Ireland 26322 C T 1972 1970 Phe26Phe
78 Ireland 26323 T 1972 1971
79 Ireland 26324 T 1972 1971
80 Ireland 26325 G 1972 1971
81 Ireland 26326 C 1972 1971
82 Ireland 26327 T 1972 1971
83 Ireland 26328 A 1972 1971
84 Ireland 26329 G 1972 1971
85 Ireland 26330 T 1972 1971
86 Ireland 26331 T 1972 1971
87 Ireland 26332 A 1972 1971
88 Ireland 26333 C 1972 1971
89 Ireland 26334 A 1972 1971
90 Ireland 26335 C 1972 1971
91 Ireland 26336 T 1972 1971
92 Ireland 26337 A 1972 1971
93 Ireland 26338 G 1972 1971
94 Ireland 26339 C 1972 1971
95 Ireland 26340 C T 1972 1970 Ala32Ala
96 Ireland 26341 A 1972 1971
97 Ireland 26342 T 1972 1971
98 Ireland 26343 C 1972 1971
99 Ireland 26344 C 1972 1971
100 Ireland 26345 T 1972 1971
101 Ireland 26346 T 1972 1971
102 Ireland 26347 A 1972 1971
103 Ireland 26348 C 1972 1971
104 Ireland 26349 T 1972 1971
105 Ireland 26350 G 1972 1971
106 Ireland 26351 C 1972 1971
107 Ireland 26352 G 1973 1972
108 Ireland 26353 C 1973 1972
109 Ireland 26354 T 1973 1972
110 Ireland 26355 T 1973 1972
111 Ireland 26356 C 1973 1972
112 Ireland 26357 G 1973 1972
113 Ireland 26358 A 1973 1972
114 Ireland 26359 T 1973 1972
115 Ireland 26360 T 1973 1972
116 Ireland 26361 G 1973 1972
117 Ireland 26362 T 1973 1972
118 Ireland 26363 G 1973 1972
119 Ireland 26364 T 1973 1972
120 Ireland 26365 G 1973 1972
121 Ireland 26366 C 1973 1972
122 Ireland 26367 G 1973 1972
123 Ireland 26368 T 1973 1973
124 Ireland 26369 A 1973 1973
125 Ireland 26370 C 1973 1973
126 Ireland 26371 T 1973 1973
127 Ireland 26372 G T 1973 1972 Cys43Phe
128 Ireland 26373 C 1973 1973
129 Ireland 26374 T 1973 1973
130 Ireland 26375 G 1973 1973
131 Ireland 26376 C 1973 1973
132 Ireland 26377 A 1973 1973
133 Ireland 26378 A 1973 1973
134 Ireland 26379 T 1973 1973
135 Ireland 26380 A 1973 1973
136 Ireland 26381 T 1973 1973
137 Ireland 26382 T 1973 1973
138 Ireland 26383 G 1973 1973
139 Ireland 26384 T 1973 1973
140 Ireland 26385 T 1973 1973
141 Ireland 26386 A 1973 1973
142 Ireland 26387 A 1973 1973
143 Ireland 26388 C 1973 1973
144 Ireland 26389 G 1973 1973
145 Ireland 26390 T 1973 1973
146 Ireland 26391 G 1973 1973
147 Ireland 26392 A 1973 1973
148 Ireland 26393 G 1973 1973
149 Ireland 26394 T 1973 1973
150 Ireland 26395 C 1973 1973
151 Ireland 26396 T 1973 1973
152 Ireland 26397 T 1973 1973
153 Ireland 26398 G 1973 1973
154 Ireland 26399 T 1973 1973
155 Ireland 26400 A 1973 1973
156 Ireland 26401 A 1973 1973
157 Ireland 26402 A 1973 1973
158 Ireland 26403 A 1973 1973
159 Ireland 26404 C 1973 1973
160 Ireland 26405 C 1973 1973
161 Ireland 26406 T 1973 1973
162 Ireland 26407 T 1973 1973
163 Ireland 26408 C 1973 1973
164 Ireland 26409 T 1973 1973
165 Ireland 26410 T C 1973 1971 Phe56Leu
166 Ireland 26411 T 1973 1973
167 Ireland 26412 T 1973 1973
168 Ireland 26413 T 1973 1973
169 Ireland 26414 A 1973 1973
170 Ireland 26415 C 1973 1973
171 Ireland 26416 G T 1973 1972 Val58Phe
172 Ireland 26417 T 1973 1973
173 Ireland 26418 T 1973 1973
174 Ireland 26419 T 1973 1973
175 Ireland 26420 A 1973 1973
176 Ireland 26421 C 1973 1973
177 Ireland 26422 T 1973 1973
178 Ireland 26423 C 1973 1973
179 Ireland 26424 T C 1973 1939 Ser60Ser
180 Ireland 26425 C 1973 1973
181 Ireland 26426 G 1973 1973
182 Ireland 26427 T 1973 1973
183 Ireland 26428 G 1973 1973
184 Ireland 26429 T 1973 1973
185 Ireland 26430 T 1973 1973
186 Ireland 26431 A 1973 1973
187 Ireland 26432 A 1973 1973
188 Ireland 26433 A 1973 1973
189 Ireland 26434 A 1973 1973
190 Ireland 26435 A 1973 1973
191 Ireland 26436 T 1973 1973
192 Ireland 26437 C 1973 1973
193 Ireland 26438 T 1973 1973
194 Ireland 26439 G 1973 1973
195 Ireland 26440 A 1973 1973
196 Ireland 26441 A 1973 1973
197 Ireland 26442 T 1973 1973
198 Ireland 26443 T C 1973 1948 Ser67Pro
199 Ireland 26444 C 1973 1973
200 Ireland 26445 T 1973 1973
201 Ireland 26446 T 1973 1973
202 Ireland 26447 C T 1973 1959 Ser68Phe
203 Ireland 26448 T 1973 1973
204 Ireland 26449 A 1973 1973
205 Ireland 26450 G 1973 1973
206 Ireland 26451 A 1973 1973
207 Ireland 26452 G 1973 1973
208 Ireland 26453 T 1973 1973
209 Ireland 26454 T 1973 1973
210 Ireland 26455 C 1973 1973
211 Ireland 26456 C T 1973 1964 Pro71Leu
212 Ireland 26457 T 1973 1973
213 Ireland 26458 G 1973 1973
214 Ireland 26459 A 1973 1973
215 Ireland 26460 T 1973 1973
216 Ireland 26461 C T 1973 1972 Leu73Phe
217 Ireland 26462 T 1973 1973
218 Ireland 26463 T 1973 1973
219 Ireland 26464 C T 1973 1965 Leu74Leu
220 Ireland 26465 T 1973 1973
221 Ireland 26466 G 1973 1973
222 Ireland 26467 G 1973 1973
223 Ireland 26468 T 1973 1973
224 Ireland 26469 C T 1973 1972 Val75Val
225 Ireland 26470 T 1973 1973
226 Ireland 26471 A 1973 1973
227 Ireland 26472 A 1973 1973