National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G I K L M N P R S T V Y
*     2                                  
-     228                                  
?                                        
A     12                                  
C     9                                  
D     3                                  
E     6                                  
F     15                                  
G     3                                  
I     9                                  
K     6                                  
L     43                                  
M     3                                  
N     15                                  
P     6                                  
R     9                                  
S     24                                  
T     12                                  
V     39                                  
Y     12                                  

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Iraq 26245 A 32 32
1 Iraq 26246 T 32 32
2 Iraq 26247 G 32 32
3 Iraq 26248 T 32 32
4 Iraq 26249 A 32 32
5 Iraq 26250 C 32 32
6 Iraq 26251 T 32 32
7 Iraq 26252 C 32 32
8 Iraq 26253 A 32 32
9 Iraq 26254 T 32 32
10 Iraq 26255 T 32 32
11 Iraq 26256 C 32 32
12 Iraq 26257 G 32 32
13 Iraq 26258 T 32 32
14 Iraq 26259 T 32 32
15 Iraq 26260 T 32 32
16 Iraq 26261 C 32 32
17 Iraq 26262 G 32 32
18 Iraq 26263 G 32 32
19 Iraq 26264 A 32 32
20 Iraq 26265 A 32 32
21 Iraq 26266 G 32 32
22 Iraq 26267 A 32 32
23 Iraq 26268 G 32 32
24 Iraq 26269 A 32 32
25 Iraq 26270 C 32 32
26 Iraq 26271 A 32 32
27 Iraq 26272 G 32 32
28 Iraq 26273 G 32 32
29 Iraq 26274 T 32 32
30 Iraq 26275 A 32 32
31 Iraq 26276 C 32 32
32 Iraq 26277 G 32 32
33 Iraq 26278 T 32 32
34 Iraq 26279 T 32 32
35 Iraq 26280 A 32 32
36 Iraq 26281 A 32 32
37 Iraq 26282 T 32 32
38 Iraq 26283 A 32 32
39 Iraq 26284 G 32 32
40 Iraq 26285 T 32 32
41 Iraq 26286 T 32 32
42 Iraq 26287 A 32 32
43 Iraq 26288 A 32 32
44 Iraq 26289 T 32 32
45 Iraq 26290 A 32 32
46 Iraq 26291 G 32 32
47 Iraq 26292 C 32 32
48 Iraq 26293 G 32 32
49 Iraq 26294 T 32 32
50 Iraq 26295 A 32 32
51 Iraq 26296 C 32 32
52 Iraq 26297 T 32 32
53 Iraq 26298 T 32 32
54 Iraq 26299 C 32 32
55 Iraq 26300 T 32 32
56 Iraq 26301 T 32 32
57 Iraq 26302 T 32 32
58 Iraq 26303 T 32 32
59 Iraq 26304 T 32 32
60 Iraq 26305 C 32 32
61 Iraq 26306 T 32 32
62 Iraq 26307 T 32 32
63 Iraq 26308 G 32 32
64 Iraq 26309 C 32 32
65 Iraq 26310 T 32 32
66 Iraq 26311 T 32 32
67 Iraq 26312 T 32 32
68 Iraq 26313 C 32 32
69 Iraq 26314 G 32 32
70 Iraq 26315 T 32 32
71 Iraq 26316 G 32 32
72 Iraq 26317 G 32 32
73 Iraq 26318 T 32 32
74 Iraq 26319 A 33 33
75 Iraq 26320 T 33 33
76 Iraq 26321 T 33 33
77 Iraq 26322 C 33 33
78 Iraq 26323 T 33 33
79 Iraq 26324 T 33 33
80 Iraq 26325 G 33 33
81 Iraq 26326 C 33 33
82 Iraq 26327 T 33 33
83 Iraq 26328 A 33 33
84 Iraq 26329 G 33 33
85 Iraq 26330 T 33 33
86 Iraq 26331 T 33 33
87 Iraq 26332 A 33 33
88 Iraq 26333 C 33 33
89 Iraq 26334 A 33 33
90 Iraq 26335 C 33 33
91 Iraq 26336 T 33 33
92 Iraq 26337 A 33 33
93 Iraq 26338 G 33 33
94 Iraq 26339 C 33 33
95 Iraq 26340 C 33 33
96 Iraq 26341 A 33 33
97 Iraq 26342 T 33 33
98 Iraq 26343 C 33 33
99 Iraq 26344 C 33 33
100 Iraq 26345 T 33 33
101 Iraq 26346 T 33 33
102 Iraq 26347 A 33 33
103 Iraq 26348 C 33 33
104 Iraq 26349 T 33 33
105 Iraq 26350 G 33 33
106 Iraq 26351 C 33 33
107 Iraq 26352 G 33 33
108 Iraq 26353 C 33 33
109 Iraq 26354 T 33 33
110 Iraq 26355 T 33 33
111 Iraq 26356 C 33 33
112 Iraq 26357 G 33 33
113 Iraq 26358 A 33 33
114 Iraq 26359 T 33 33
115 Iraq 26360 T 33 33
116 Iraq 26361 G 33 33
117 Iraq 26362 T 33 33
118 Iraq 26363 G 33 33
119 Iraq 26364 T 33 33
120 Iraq 26365 G 33 33
121 Iraq 26366 C 33 33
122 Iraq 26367 G 33 33
123 Iraq 26368 T 33 33
124 Iraq 26369 A 33 33
125 Iraq 26370 C 33 33
126 Iraq 26371 T 33 33
127 Iraq 26372 G 33 33
128 Iraq 26373 C 33 33
129 Iraq 26374 T 33 33
130 Iraq 26375 G 33 33
131 Iraq 26376 C 33 33
132 Iraq 26377 A 33 33
133 Iraq 26378 A 33 33
134 Iraq 26379 T 33 33
135 Iraq 26380 A 33 33
136 Iraq 26381 T 33 33
137 Iraq 26382 T 32 32
138 Iraq 26383 G 32 32
139 Iraq 26384 T 32 32
140 Iraq 26385 T 32 32
141 Iraq 26386 A 32 32
142 Iraq 26387 A 32 32
143 Iraq 26388 C 32 32
144 Iraq 26389 G 32 32
145 Iraq 26390 T 32 32
146 Iraq 26391 G 32 32
147 Iraq 26392 A 32 32
148 Iraq 26393 G 32 32
149 Iraq 26394 T 32 32
150 Iraq 26395 C 32 32
151 Iraq 26396 T 32 32
152 Iraq 26397 T 32 32
153 Iraq 26398 G 32 32
154 Iraq 26399 T 32 32
155 Iraq 26400 A 32 32
156 Iraq 26401 A 32 32
157 Iraq 26402 A 32 32
158 Iraq 26403 A 32 32
159 Iraq 26404 C 32 32
160 Iraq 26405 C 32 32
161 Iraq 26406 T 32 32
162 Iraq 26407 T 32 32
163 Iraq 26408 C 32 32
164 Iraq 26409 T 32 32
165 Iraq 26410 T 32 32
166 Iraq 26411 T 32 32
167 Iraq 26412 T 32 32
168 Iraq 26413 T 32 32
169 Iraq 26414 A 32 32
170 Iraq 26415 C 32 32
171 Iraq 26416 G 32 32
172 Iraq 26417 T 32 32
173 Iraq 26418 T 32 32
174 Iraq 26419 T 32 32
175 Iraq 26420 A 32 32
176 Iraq 26421 C 32 32
177 Iraq 26422 T 32 32
178 Iraq 26423 C 32 32
179 Iraq 26424 T 32 32
180 Iraq 26425 C 32 32
181 Iraq 26426 G 32 32
182 Iraq 26427 T 32 32
183 Iraq 26428 G 32 32
184 Iraq 26429 T 32 32
185 Iraq 26430 T 32 32
186 Iraq 26431 A 32 32
187 Iraq 26432 A 32 32
188 Iraq 26433 A 32 32
189 Iraq 26434 A 32 32
190 Iraq 26435 A 32 32
191 Iraq 26436 T 32 32
192 Iraq 26437 C 32 32
193 Iraq 26438 T 32 32
194 Iraq 26439 G 32 32
195 Iraq 26440 A 32 32
196 Iraq 26441 A 32 32
197 Iraq 26442 T 32 32
198 Iraq 26443 T 32 32
199 Iraq 26444 C 32 32
200 Iraq 26445 T 32 32
201 Iraq 26446 T 32 32
202 Iraq 26447 C 32 32
203 Iraq 26448 T 32 32
204 Iraq 26449 A 32 32
205 Iraq 26450 G 32 32
206 Iraq 26451 A 32 32
207 Iraq 26452 G 32 32
208 Iraq 26453 T 32 32
209 Iraq 26454 T 32 32
210 Iraq 26455 C 32 32
211 Iraq 26456 C 32 32
212 Iraq 26457 T 32 32
213 Iraq 26458 G 32 32
214 Iraq 26459 A 32 32
215 Iraq 26460 T 32 32
216 Iraq 26461 C 32 32
217 Iraq 26462 T 32 32
218 Iraq 26463 T 32 32
219 Iraq 26464 C 32 32
220 Iraq 26465 T 32 32
221 Iraq 26466 G 32 32
222 Iraq 26467 G 32 32
223 Iraq 26468 T 32 32
224 Iraq 26469 C 32 32
225 Iraq 26470 T 32 32
226 Iraq 26471 A 32 32
227 Iraq 26472 A 32 32