National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G H I K L M N P Q R S T V Y
*     2                                      
-     227                                      
?                                            
A     12 3   1     2                   1 1    
C 1   9         1                   1       1
D     3                                   1 1
E     6                                      
F     15         2                            
G     3                                      
H                                            
I     9               2                   1  
K     6                           1          
L     43         3   1 1   10 1   2         1  
M     3                                      
N     15                       1         1    
P     6                   1           1      
Q                                            
R 1   8           1       1         2        
S     24         1                     2      
T     12 1             1               1 1    
V     39     1   4 1   2   1               5  
Y     12                                     1

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 India 26245 A 4737 4737
1 India 26246 T 4738 4738
2 India 26247 G 4738 4738
3 India 26248 T 4738 4738
4 India 26249 A 4738 4738
5 India 26250 C 4738 4738
6 India 26251 T 4738 4738
7 India 26252 C 4738 4738
8 India 26253 A 4739 4739
9 India 26254 T 4739 4739
10 India 26255 T 4739 4739
11 India 26256 C T 4739 4731 Phe4Phe
12 India 26257 G A 4740 4739 Val5Ile
13 India 26258 T 4741 4741
14 India 26259 T 4741 4740
15 India 26260 T 4741 4741
16 India 26261 C 4741 4741
17 India 26262 G T,A 4741 4730 Ser6Ser-p.Ser6Ser
18 India 26263 G 4741 4741
19 India 26264 A 4742 4742
20 India 26265 A 4742 4742
21 India 26266 G 4742 4741
22 India 26267 A 4742 4742
23 India 26268 G 4742 4742
24 India 26269 A 4742 4742
25 India 26270 C T 4742 4741 Thr9Ile
26 India 26271 A 4742 4742
27 India 26272 G 4742 4742
28 India 26273 G 4743 4743
29 India 26274 T 4743 4743
30 India 26275 A 4743 4743
31 India 26276 C 4743 4743
32 India 26277 G 4743 4743
33 India 26278 T C 4744 4741 Leu12Leu
34 India 26279 T 4744 4744
35 India 26280 A 4744 4744
36 India 26281 A 4744 4744
37 India 26282 T 4744 4744
38 India 26283 A 4744 4744
39 India 26284 G 4744 4744
40 India 26285 T A 4743 4742 Val14Asp
41 India 26286 T 4743 4743
42 India 26287 A 4743 4743
43 India 26288 A 4743 4743
44 India 26289 T C 4743 4742 Asn15Asn
45 India 26290 A 4743 4743
46 India 26291 G 4742 4742
47 India 26292 C 4741 4741
48 India 26293 G 4740 4740
49 India 26294 T 4740 4740
50 India 26295 A 4740 4740
51 India 26296 C 4740 4740
52 India 26297 T 4740 4740
53 India 26298 T 4740 4740
54 India 26299 C 4740 4740
55 India 26300 T 4740 4740
56 India 26301 T 4740 4740
57 India 26302 T 4739 4739
58 India 26303 T 4739 4739
59 India 26304 T 4739 4738
60 India 26305 C T 4736 4712 Leu21Phe
61 India 26306 T 4736 4735
62 India 26307 T 4734 4732
63 India 26308 G 4731 4728
64 India 26309 C 4731 4728
65 India 26310 T 4727 4724
66 India 26311 T 4727 4725
67 India 26312 T 4726 4723
68 India 26313 C T 4726 4721 Phe23Phe
69 India 26314 G 4726 4724
70 India 26315 T 4724 4722
71 India 26316 G 4724 4720
72 India 26317 G 4724 4722
73 India 26318 T 4724 4720
74 India 26319 A G,T 4724 4715 Val25Val-p.Val25Val
75 India 26320 T 4723 4718
76 India 26321 T 4723 4718
77 India 26322 C 4723 4717
78 India 26323 T 4723 4717
79 India 26324 T 4722 4715
80 India 26325 G 4722 4715
81 India 26326 C T 4722 4711 Leu28Leu
82 India 26327 T 4722 4714
83 India 26328 A 4723 4715
84 India 26329 G A 4723 4715 Val29Ile
85 India 26330 T G 4723 4713 Val29Gly
86 India 26331 T 4723 4716
87 India 26332 A T 4723 4714 Thr30Ser
88 India 26333 C 4723 4713
89 India 26334 A 4723 4716
90 India 26335 C T 4723 4712 Leu31Leu
91 India 26336 T C 4723 4712 Leu31Pro
92 India 26337 A 4722 4712
93 India 26338 G T 4722 4707 Ala32Ser
94 India 26339 C A,G 4722 4695 Ala32Asp-p.Ala32Gly
95 India 26340 C T,A 4722 4692 Ala32Ala-p.Ala32Ala
96 India 26341 A 4722 4695
97 India 26342 T 4722 4695
98 India 26343 C T 4722 4694 Ile33Ile
99 India 26344 C A 4722 4694 Leu34Ile
100 India 26345 T 4720 4693
101 India 26346 T 4720 4693
102 India 26347 A G 4720 4691 Thr35Ala
103 India 26348 C 4720 4692
104 India 26349 T C 4720 4691 Thr35Thr
105 India 26350 G A 4720 4683 Ala36Thr
106 India 26351 C G 4717 4653 Ala36Gly
107 India 26352 G A 4716 4651 Ala36Ala
108 India 26353 C T 4716 4650 Leu37Phe
109 India 26354 T C,A 4716 4650 Leu37Pro-p.Leu37His
110 India 26355 T A 4716 4656 Leu37Leu
111 India 26356 C T,G,A 4715 4652 Arg38Gly-p.Arg38Arg
112 India 26357 G T 4712 4690 Arg38Leu
113 India 26358 A T 4708 4683 Arg38Arg
114 India 26359 T C 4705 4681 Leu39Leu
115 India 26360 T 4701 4678
116 India 26361 G A 4700 4678 Leu39Leu
117 India 26362 T 4699 4679
118 India 26363 G 4699 4679
119 India 26364 T 4701 4682
120 India 26365 G 4701 4682
121 India 26366 C 4701 4683
122 India 26367 G 4701 4683
123 India 26368 T 4701 4683
124 India 26369 A 4701 4684
125 India 26370 C T 4700 4682 Tyr42Tyr
126 India 26371 T C 4699 4683 Cys43Arg
127 India 26372 G T 4693 4679 Cys43Phe
128 India 26373 C 4693 4680
129 India 26374 T 4683 4666
130 India 26375 G A 4683 4669 Cys44Tyr
131 India 26376 C A 4679 4665 Cys44*
132 India 26377 A 4676 4662
133 India 26378 A 4676 4663
134 India 26379 T 4674 4660
135 India 26380 A G 4674 4658 Ile46Val
136 India 26381 T 4673 4659
137 India 26382 T A 4623 4600 Ile46Ile
138 India 26383 G 4615 4601
139 India 26384 T 4603 4588
140 India 26385 T A 4590 4575 Val47Val
141 India 26386 A 4584 4575
142 India 26387 A 4583 4574
143 India 26388 C 4582 4574
144 India 26389 G T 4578 4566 Val49Leu
145 India 26390 T 4575 4566
146 India 26391 G 4574 4564
147 India 26392 A 4574 4566
148 India 26393 G 4574 4566
149 India 26394 T 4574 4566
150 India 26395 C 4574 4566
151 India 26396 T 4574 4566
152 India 26397 T C 4574 4564 Leu51Leu
153 India 26398 G 4575 4567
154 India 26399 T 4575 4567
155 India 26400 A G 4575 4561 Val52Val
156 India 26401 A C 4575 4565 Lys53Gln
157 India 26402 A 4573 4564
158 India 26403 A 4573 4562
159 India 26404 C 4573 4564
160 India 26405 C 4573 4563
161 India 26406 T 4572 4563
162 India 26407 T 4572 4564
163 India 26408 C 4572 4564
164 India 26409 T 4571 4553
165 India 26410 T 4571 4562
166 India 26411 T 4571 4562
167 India 26412 T 4571 4563
168 India 26413 T 4571 4563
169 India 26414 A 4572 4563
170 India 26415 C 4572 4569
171 India 26416 G T 4571 4566 Val58Phe
172 India 26417 T 4571 4568
173 India 26418 T 4571 4568
174 India 26419 T 4571 4569
175 India 26420 A 4571 4568
176 India 26421 C 4570 4568
177 India 26422 T 4570 4569
178 India 26423 C 4570 4565
179 India 26424 T 4570 4566
180 India 26425 C 4569 4565
181 India 26426 G 4569 4567
182 India 26427 T 4569 4568
183 India 26428 G T 4569 4568 Val62Phe
184 India 26429 T 4568 4568
185 India 26430 T 4568 4567
186 India 26431 A 4568 4566
187 India 26432 A 4567 4567
188 India 26433 A 4567 4565
189 India 26434 A 4566 4566
190 India 26435 A 4566 4565
191 India 26436 T 4566 4564
192 India 26437 C T,A 4566 4561 Leu65Met-p.Leu65Leu
193 India 26438 T 4566 4566
194 India 26439 G T 4566 4562 Leu65Leu
195 India 26440 A 4566 4566
196 India 26441 A C 4566 4565 Asn66Thr
197 India 26442 T 4566 4566
198 India 26443 T 4566 4566
199 India 26444 C 4566 4563
200 India 26445 T 4566 4565
201 India 26446 T 4566 4563
202 India 26447 C T 4566 4507 Ser68Phe
203 India 26448 T 4566 4564
204 India 26449 A 4566 4565
205 India 26450 G 4566 4563
206 India 26451 A 4566 4564
207 India 26452 G T 4566 4564 Val70Phe
208 India 26453 T 4566 4566
209 India 26454 T 4566 4566
210 India 26455 C T 4566 4564 Pro71Ser
211 India 26456 C T 4565 4554 Pro71Leu
212 India 26457 T 4565 4561
213 India 26458 G T 4565 4562 Asp72Tyr
214 India 26459 A T 4565 4563 Asp72Val
215 India 26460 T 4564 4563
216 India 26461 C T,G 4564 4552 Leu73Phe-p.Leu73Val
217 India 26462 T 4563 4562
218 India 26463 T 4563 4563
219 India 26464 C T 4563 4560 Leu74Leu
220 India 26465 T 4563 4562
221 India 26466 G 4562 4562
222 India 26467 G T 4562 4560 Val75Phe
223 India 26468 T 4561 4561
224 India 26469 C A 4560 4545 Val75Val
225 India 26470 T 4557 4557
226 India 26471 A 4557 4557
227 India 26472 A 4556 4556