National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G I K L M N P R S T V Y
*     2                                  
-     228                                  
?                                        
A     12                                  
C     9                                  
D     3                                  
E     6                                  
F     15                                  
G     3                                  
I     9                                  
K     6                                  
L     43                 2                
M     3                                  
N     15                                  
P     6                                  
R     9                                  
S     24                                  
T     12             1                    
V     39         2         1              
Y     12                                  

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Hungary 26245 A 278 278
1 Hungary 26246 T 278 278
2 Hungary 26247 G 278 278
3 Hungary 26248 T 278 278
4 Hungary 26249 A 278 278
5 Hungary 26250 C 278 278
6 Hungary 26251 T 278 278
7 Hungary 26252 C 278 278
8 Hungary 26253 A 278 278
9 Hungary 26254 T 278 278
10 Hungary 26255 T 278 278
11 Hungary 26256 C 278 278
12 Hungary 26257 G 278 278
13 Hungary 26258 T 278 278
14 Hungary 26259 T 278 278
15 Hungary 26260 T 278 278
16 Hungary 26261 C 278 278
17 Hungary 26262 G 278 278
18 Hungary 26263 G 278 278
19 Hungary 26264 A 278 278
20 Hungary 26265 A 278 278
21 Hungary 26266 G 278 278
22 Hungary 26267 A 278 278
23 Hungary 26268 G 278 278
24 Hungary 26269 A 278 278
25 Hungary 26270 C 278 278
26 Hungary 26271 A 278 278
27 Hungary 26272 G 278 278
28 Hungary 26273 G 278 278
29 Hungary 26274 T 278 278
30 Hungary 26275 A 278 278
31 Hungary 26276 C 278 278
32 Hungary 26277 G 278 278
33 Hungary 26278 T 278 278
34 Hungary 26279 T 278 278
35 Hungary 26280 A 278 278
36 Hungary 26281 A 278 278
37 Hungary 26282 T 278 278
38 Hungary 26283 A 278 278
39 Hungary 26284 G 278 278
40 Hungary 26285 T 278 278
41 Hungary 26286 T 278 278
42 Hungary 26287 A 278 278
43 Hungary 26288 A 278 278
44 Hungary 26289 T 278 278
45 Hungary 26290 A 278 278
46 Hungary 26291 G 278 278
47 Hungary 26292 C 278 278
48 Hungary 26293 G 278 278
49 Hungary 26294 T 278 278
50 Hungary 26295 A 278 278
51 Hungary 26296 C 278 278
52 Hungary 26297 T 278 278
53 Hungary 26298 T 278 278
54 Hungary 26299 C 278 278
55 Hungary 26300 T 278 278
56 Hungary 26301 T G 278 277 Leu19Leu
57 Hungary 26302 T 278 278
58 Hungary 26303 T 278 278
59 Hungary 26304 T 278 278
60 Hungary 26305 C 278 278
61 Hungary 26306 T 278 278
62 Hungary 26307 T 278 278
63 Hungary 26308 G 278 278
64 Hungary 26309 C 278 278
65 Hungary 26310 T 278 278
66 Hungary 26311 T 278 278
67 Hungary 26312 T 278 278
68 Hungary 26313 C 278 278
69 Hungary 26314 G A 278 277 Val24Met
70 Hungary 26315 T 278 278
71 Hungary 26316 G 278 278
72 Hungary 26317 G 278 278
73 Hungary 26318 T 278 278
74 Hungary 26319 A 278 278
75 Hungary 26320 T 278 278
76 Hungary 26321 T 278 278
77 Hungary 26322 C 278 278
78 Hungary 26323 T 278 278
79 Hungary 26324 T 278 278
80 Hungary 26325 G 278 278
81 Hungary 26326 C T 278 275 Leu28Leu
82 Hungary 26327 T 278 278
83 Hungary 26328 A 278 278
84 Hungary 26329 G 278 278
85 Hungary 26330 T 278 278
86 Hungary 26331 T 278 278
87 Hungary 26332 A 278 278
88 Hungary 26333 C T 278 277 Thr30Ile
89 Hungary 26334 A 278 278
90 Hungary 26335 C 278 278
91 Hungary 26336 T 278 278
92 Hungary 26337 A 278 278
93 Hungary 26338 G 278 278
94 Hungary 26339 C 278 278
95 Hungary 26340 C 278 278
96 Hungary 26341 A 278 278
97 Hungary 26342 T 278 278
98 Hungary 26343 C 278 278
99 Hungary 26344 C 278 278
100 Hungary 26345 T 278 278
101 Hungary 26346 T 278 278
102 Hungary 26347 A 278 278
103 Hungary 26348 C 278 278
104 Hungary 26349 T 278 278
105 Hungary 26350 G 278 278
106 Hungary 26351 C 278 278
107 Hungary 26352 G 278 278
108 Hungary 26353 C 278 278
109 Hungary 26354 T 278 278
110 Hungary 26355 T 278 278
111 Hungary 26356 C 278 278
112 Hungary 26357 G 278 278
113 Hungary 26358 A 278 278
114 Hungary 26359 T 278 278
115 Hungary 26360 T 278 278
116 Hungary 26361 G 278 278
117 Hungary 26362 T 278 278
118 Hungary 26363 G 278 278
119 Hungary 26364 T 278 278
120 Hungary 26365 G 278 278
121 Hungary 26366 C 278 278
122 Hungary 26367 G 278 278
123 Hungary 26368 T 278 278
124 Hungary 26369 A 278 278
125 Hungary 26370 C 278 278
126 Hungary 26371 T 278 278
127 Hungary 26372 G 278 278
128 Hungary 26373 C 278 278
129 Hungary 26374 T 278 278
130 Hungary 26375 G 278 278
131 Hungary 26376 C 278 278
132 Hungary 26377 A 278 278
133 Hungary 26378 A 278 278
134 Hungary 26379 T 278 278
135 Hungary 26380 A 278 278
136 Hungary 26381 T 278 278
137 Hungary 26382 T 278 278
138 Hungary 26383 G 278 278
139 Hungary 26384 T 278 278
140 Hungary 26385 T 278 278
141 Hungary 26386 A 278 278
142 Hungary 26387 A 278 278
143 Hungary 26388 C 278 278
144 Hungary 26389 G 278 278
145 Hungary 26390 T 278 278
146 Hungary 26391 G 278 278
147 Hungary 26392 A 278 278
148 Hungary 26393 G 278 278
149 Hungary 26394 T 278 278
150 Hungary 26395 C 278 278
151 Hungary 26396 T 278 278
152 Hungary 26397 T 278 278
153 Hungary 26398 G 278 278
154 Hungary 26399 T 278 278
155 Hungary 26400 A 278 278
156 Hungary 26401 A 278 278
157 Hungary 26402 A 278 278
158 Hungary 26403 A 278 278
159 Hungary 26404 C 278 278
160 Hungary 26405 C 278 278
161 Hungary 26406 T 278 278
162 Hungary 26407 T 278 278
163 Hungary 26408 C 278 278
164 Hungary 26409 T 278 278
165 Hungary 26410 T 278 278
166 Hungary 26411 T 278 278
167 Hungary 26412 T 278 278
168 Hungary 26413 T 278 278
169 Hungary 26414 A 278 278
170 Hungary 26415 C 278 278
171 Hungary 26416 G T 278 277 Val58Phe
172 Hungary 26417 T 278 278
173 Hungary 26418 T 278 278
174 Hungary 26419 T 278 278
175 Hungary 26420 A 278 278
176 Hungary 26421 C 278 278
177 Hungary 26422 T 278 278
178 Hungary 26423 C 278 278
179 Hungary 26424 T 278 278
180 Hungary 26425 C 278 278
181 Hungary 26426 G 278 278
182 Hungary 26427 T 278 278
183 Hungary 26428 G T 278 272 Val62Phe
184 Hungary 26429 T 278 278
185 Hungary 26430 T 278 278
186 Hungary 26431 A 278 278
187 Hungary 26432 A 278 278
188 Hungary 26433 A 278 278
189 Hungary 26434 A 278 278
190 Hungary 26435 A 278 278
191 Hungary 26436 T 278 278
192 Hungary 26437 C 278 278
193 Hungary 26438 T 278 278
194 Hungary 26439 G 278 278
195 Hungary 26440 A 278 278
196 Hungary 26441 A 278 278
197 Hungary 26442 T 278 278
198 Hungary 26443 T 278 278
199 Hungary 26444 C 278 278
200 Hungary 26445 T 278 278
201 Hungary 26446 T 278 278
202 Hungary 26447 C 278 278
203 Hungary 26448 T 278 278
204 Hungary 26449 A 278 278
205 Hungary 26450 G 278 278
206 Hungary 26451 A 278 278
207 Hungary 26452 G 278 278
208 Hungary 26453 T 278 278
209 Hungary 26454 T 278 278
210 Hungary 26455 C 278 278
211 Hungary 26456 C 278 278
212 Hungary 26457 T 278 278
213 Hungary 26458 G 278 278
214 Hungary 26459 A 278 278
215 Hungary 26460 T 278 278
216 Hungary 26461 C 278 278
217 Hungary 26462 T 278 278
218 Hungary 26463 T 278 278
219 Hungary 26464 C 278 278
220 Hungary 26465 T 278 278
221 Hungary 26466 G 278 278
222 Hungary 26467 G 278 278
223 Hungary 26468 T 278 278
224 Hungary 26469 C 278 278
225 Hungary 26470 T 278 278
226 Hungary 26471 A 278 278
227 Hungary 26472 A 278 278