National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G I K L M N P R S T V Y
*     2                                  
-     228                                  
?                                        
A     12                                  
C     9                                  
D     3                                  
E     6                                  
F     15         1                        
G     3                                  
I     9                                  
K     6                                  
L     43                                  
M     3                                  
N     15                                  
P     6                                  
R     9                                  
S     24                                  
T     12                                  
V     39                                  
Y     12                                  

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Guatemala 26245 A 32 32
1 Guatemala 26246 T 32 32
2 Guatemala 26247 G 32 32
3 Guatemala 26248 T 32 32
4 Guatemala 26249 A 32 32
5 Guatemala 26250 C 32 32
6 Guatemala 26251 T 32 32
7 Guatemala 26252 C 32 32
8 Guatemala 26253 A 32 32
9 Guatemala 26254 T 32 32
10 Guatemala 26255 T 32 32
11 Guatemala 26256 C 32 32
12 Guatemala 26257 G 32 32
13 Guatemala 26258 T 32 32
14 Guatemala 26259 T 32 32
15 Guatemala 26260 T 32 32
16 Guatemala 26261 C 32 32
17 Guatemala 26262 G 32 32
18 Guatemala 26263 G 32 32
19 Guatemala 26264 A 32 32
20 Guatemala 26265 A 32 32
21 Guatemala 26266 G 32 32
22 Guatemala 26267 A 32 32
23 Guatemala 26268 G 32 32
24 Guatemala 26269 A 32 32
25 Guatemala 26270 C 32 32
26 Guatemala 26271 A 32 32
27 Guatemala 26272 G 32 32
28 Guatemala 26273 G 32 32
29 Guatemala 26274 T 32 32
30 Guatemala 26275 A 32 32
31 Guatemala 26276 C 32 32
32 Guatemala 26277 G 32 32
33 Guatemala 26278 T 32 32
34 Guatemala 26279 T 32 32
35 Guatemala 26280 A 32 32
36 Guatemala 26281 A 32 32
37 Guatemala 26282 T 32 32
38 Guatemala 26283 A 32 32
39 Guatemala 26284 G 32 32
40 Guatemala 26285 T 32 32
41 Guatemala 26286 T 32 32
42 Guatemala 26287 A 32 32
43 Guatemala 26288 A 32 32
44 Guatemala 26289 T 32 32
45 Guatemala 26290 A 32 32
46 Guatemala 26291 G 32 32
47 Guatemala 26292 C 32 32
48 Guatemala 26293 G 32 32
49 Guatemala 26294 T 32 32
50 Guatemala 26295 A 32 32
51 Guatemala 26296 C 32 32
52 Guatemala 26297 T 32 32
53 Guatemala 26298 T 32 32
54 Guatemala 26299 C 32 32
55 Guatemala 26300 T 32 32
56 Guatemala 26301 T 32 32
57 Guatemala 26302 T 32 32
58 Guatemala 26303 T 32 32
59 Guatemala 26304 T 32 32
60 Guatemala 26305 C 32 32
61 Guatemala 26306 T 32 32
62 Guatemala 26307 T 32 32
63 Guatemala 26308 G 32 32
64 Guatemala 26309 C 32 32
65 Guatemala 26310 T 32 32
66 Guatemala 26311 T 32 32
67 Guatemala 26312 T 32 32
68 Guatemala 26313 C T 32 31 Phe23Phe
69 Guatemala 26314 G 32 32
70 Guatemala 26315 T 32 32
71 Guatemala 26316 G 32 32
72 Guatemala 26317 G 32 32
73 Guatemala 26318 T 32 32
74 Guatemala 26319 A 32 32
75 Guatemala 26320 T 32 32
76 Guatemala 26321 T 32 32
77 Guatemala 26322 C 32 32
78 Guatemala 26323 T 32 32
79 Guatemala 26324 T 32 32
80 Guatemala 26325 G 32 32
81 Guatemala 26326 C 32 32
82 Guatemala 26327 T 32 32
83 Guatemala 26328 A 32 32
84 Guatemala 26329 G 32 32
85 Guatemala 26330 T 32 32
86 Guatemala 26331 T 32 32
87 Guatemala 26332 A 32 32
88 Guatemala 26333 C 32 32
89 Guatemala 26334 A 32 32
90 Guatemala 26335 C 32 32
91 Guatemala 26336 T 32 32
92 Guatemala 26337 A 32 32
93 Guatemala 26338 G 32 32
94 Guatemala 26339 C 32 32
95 Guatemala 26340 C 32 32
96 Guatemala 26341 A 32 32
97 Guatemala 26342 T 32 32
98 Guatemala 26343 C 32 32
99 Guatemala 26344 C 32 32
100 Guatemala 26345 T 32 32
101 Guatemala 26346 T 32 32
102 Guatemala 26347 A 32 32
103 Guatemala 26348 C 32 32
104 Guatemala 26349 T 32 32
105 Guatemala 26350 G 32 32
106 Guatemala 26351 C 32 32
107 Guatemala 26352 G 32 32
108 Guatemala 26353 C 32 32
109 Guatemala 26354 T 32 32
110 Guatemala 26355 T 32 32
111 Guatemala 26356 C 32 32
112 Guatemala 26357 G 32 32
113 Guatemala 26358 A 32 32
114 Guatemala 26359 T 32 32
115 Guatemala 26360 T 32 32
116 Guatemala 26361 G 32 32
117 Guatemala 26362 T 32 32
118 Guatemala 26363 G 32 32
119 Guatemala 26364 T 32 32
120 Guatemala 26365 G 32 32
121 Guatemala 26366 C 32 32
122 Guatemala 26367 G 32 32
123 Guatemala 26368 T 32 32
124 Guatemala 26369 A 32 32
125 Guatemala 26370 C 32 32
126 Guatemala 26371 T 32 32
127 Guatemala 26372 G 32 32
128 Guatemala 26373 C 32 32
129 Guatemala 26374 T 32 32
130 Guatemala 26375 G 32 32
131 Guatemala 26376 C 32 32
132 Guatemala 26377 A 32 32
133 Guatemala 26378 A 32 32
134 Guatemala 26379 T 32 32
135 Guatemala 26380 A 32 32
136 Guatemala 26381 T 32 32
137 Guatemala 26382 T 32 32
138 Guatemala 26383 G 32 32
139 Guatemala 26384 T 32 32
140 Guatemala 26385 T 32 32
141 Guatemala 26386 A 32 32
142 Guatemala 26387 A 32 32
143 Guatemala 26388 C 32 32
144 Guatemala 26389 G 32 32
145 Guatemala 26390 T 32 32
146 Guatemala 26391 G 32 32
147 Guatemala 26392 A 32 32
148 Guatemala 26393 G 32 32
149 Guatemala 26394 T 32 32
150 Guatemala 26395 C 32 32
151 Guatemala 26396 T 32 32
152 Guatemala 26397 T 32 32
153 Guatemala 26398 G 32 32
154 Guatemala 26399 T 32 32
155 Guatemala 26400 A 32 32
156 Guatemala 26401 A 32 32
157 Guatemala 26402 A 32 32
158 Guatemala 26403 A 32 32
159 Guatemala 26404 C 32 32
160 Guatemala 26405 C 32 32
161 Guatemala 26406 T 32 32
162 Guatemala 26407 T 32 32
163 Guatemala 26408 C 32 32
164 Guatemala 26409 T 32 32
165 Guatemala 26410 T 32 32
166 Guatemala 26411 T 32 32
167 Guatemala 26412 T 32 32
168 Guatemala 26413 T 32 32
169 Guatemala 26414 A 32 32
170 Guatemala 26415 C 32 32
171 Guatemala 26416 G 32 32
172 Guatemala 26417 T 32 32
173 Guatemala 26418 T 32 32
174 Guatemala 26419 T 32 32
175 Guatemala 26420 A 32 32
176 Guatemala 26421 C 32 32
177 Guatemala 26422 T 32 32
178 Guatemala 26423 C 32 32
179 Guatemala 26424 T 32 32
180 Guatemala 26425 C 32 32
181 Guatemala 26426 G 32 32
182 Guatemala 26427 T 32 32
183 Guatemala 26428 G 32 32
184 Guatemala 26429 T 32 32
185 Guatemala 26430 T 32 32
186 Guatemala 26431 A 32 32
187 Guatemala 26432 A 32 32
188 Guatemala 26433 A 32 32
189 Guatemala 26434 A 32 32
190 Guatemala 26435 A 32 32
191 Guatemala 26436 T 32 32
192 Guatemala 26437 C 32 32
193 Guatemala 26438 T 32 32
194 Guatemala 26439 G 32 32
195 Guatemala 26440 A 32 32
196 Guatemala 26441 A 32 32
197 Guatemala 26442 T 32 32
198 Guatemala 26443 T 32 32
199 Guatemala 26444 C 32 32
200 Guatemala 26445 T 32 32
201 Guatemala 26446 T 32 32
202 Guatemala 26447 C 32 32
203 Guatemala 26448 T 32 32
204 Guatemala 26449 A 32 32
205 Guatemala 26450 G 32 32
206 Guatemala 26451 A 32 32
207 Guatemala 26452 G 32 32
208 Guatemala 26453 T 32 32
209 Guatemala 26454 T 32 32
210 Guatemala 26455 C 32 32
211 Guatemala 26456 C 32 32
212 Guatemala 26457 T 32 32
213 Guatemala 26458 G 32 32
214 Guatemala 26459 A 32 32
215 Guatemala 26460 T 32 32
216 Guatemala 26461 C 32 32
217 Guatemala 26462 T 32 32
218 Guatemala 26463 T 32 32
219 Guatemala 26464 C 32 32
220 Guatemala 26465 T 32 32
221 Guatemala 26466 G 32 32
222 Guatemala 26467 G 32 32
223 Guatemala 26468 T 32 32
224 Guatemala 26469 C 32 32
225 Guatemala 26470 T 32 32
226 Guatemala 26471 A 32 32
227 Guatemala 26472 A 32 32