National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G I K L M N P R S T V Y
*     2                                  
-     228                                  
?                                        
A     12                                  
C     9                                  
D     3                                  
E     6                                  
F     15                                  
G     3                                  
I     9                                  
K     6                                  
L     43                   1              
M     3                                  
N     15                                  
P     6                                  
R     9                                  
S     24                                  
T     12                                  
V     39                                  
Y     12                                  

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Greece 26245 A 140 140
1 Greece 26246 T 140 140
2 Greece 26247 G 140 140
3 Greece 26248 T 140 140
4 Greece 26249 A 140 140
5 Greece 26250 C 140 140
6 Greece 26251 T 140 140
7 Greece 26252 C 140 140
8 Greece 26253 A 140 140
9 Greece 26254 T 140 140
10 Greece 26255 T 140 140
11 Greece 26256 C 140 140
12 Greece 26257 G 140 140
13 Greece 26258 T 140 140
14 Greece 26259 T 140 140
15 Greece 26260 T 140 140
16 Greece 26261 C 140 140
17 Greece 26262 G 140 140
18 Greece 26263 G 140 140
19 Greece 26264 A 140 140
20 Greece 26265 A 140 140
21 Greece 26266 G 140 140
22 Greece 26267 A 140 140
23 Greece 26268 G 140 140
24 Greece 26269 A 140 140
25 Greece 26270 C 140 140
26 Greece 26271 A 140 140
27 Greece 26272 G 140 140
28 Greece 26273 G 140 140
29 Greece 26274 T 140 140
30 Greece 26275 A 140 140
31 Greece 26276 C 140 140
32 Greece 26277 G 140 140
33 Greece 26278 T 140 140
34 Greece 26279 T 140 140
35 Greece 26280 A 140 140
36 Greece 26281 A 140 140
37 Greece 26282 T 140 140
38 Greece 26283 A 140 140
39 Greece 26284 G 140 140
40 Greece 26285 T 140 140
41 Greece 26286 T 140 140
42 Greece 26287 A 140 140
43 Greece 26288 A 140 140
44 Greece 26289 T 140 140
45 Greece 26290 A 140 140
46 Greece 26291 G 140 140
47 Greece 26292 C 140 140
48 Greece 26293 G 140 140
49 Greece 26294 T 140 140
50 Greece 26295 A 140 140
51 Greece 26296 C 140 140
52 Greece 26297 T 140 140
53 Greece 26298 T 140 140
54 Greece 26299 C 140 140
55 Greece 26300 T 140 140
56 Greece 26301 T 140 140
57 Greece 26302 T 140 140
58 Greece 26303 T 140 140
59 Greece 26304 T 140 140
60 Greece 26305 C 140 140
61 Greece 26306 T 140 140
62 Greece 26307 T 140 140
63 Greece 26308 G 140 140
64 Greece 26309 C 140 140
65 Greece 26310 T 140 140
66 Greece 26311 T 140 140
67 Greece 26312 T 140 140
68 Greece 26313 C 140 140
69 Greece 26314 G 140 140
70 Greece 26315 T 140 140
71 Greece 26316 G 140 140
72 Greece 26317 G 140 140
73 Greece 26318 T 140 140
74 Greece 26319 A 140 140
75 Greece 26320 T 140 140
76 Greece 26321 T 140 140
77 Greece 26322 C 140 140
78 Greece 26323 T 140 140
79 Greece 26324 T 140 140
80 Greece 26325 G 140 140
81 Greece 26326 C 140 140
82 Greece 26327 T 140 140
83 Greece 26328 A 140 140
84 Greece 26329 G 140 140
85 Greece 26330 T 140 140
86 Greece 26331 T 140 140
87 Greece 26332 A 140 140
88 Greece 26333 C 140 140
89 Greece 26334 A 140 140
90 Greece 26335 C 140 140
91 Greece 26336 T 140 140
92 Greece 26337 A 140 140
93 Greece 26338 G 140 140
94 Greece 26339 C 140 140
95 Greece 26340 C 140 140
96 Greece 26341 A 140 140
97 Greece 26342 T 140 140
98 Greece 26343 C 140 140
99 Greece 26344 C 140 140
100 Greece 26345 T 140 140
101 Greece 26346 T 140 140
102 Greece 26347 A 140 140
103 Greece 26348 C 140 140
104 Greece 26349 T 140 140
105 Greece 26350 G 140 140
106 Greece 26351 C 140 140
107 Greece 26352 G 140 140
108 Greece 26353 C 140 140
109 Greece 26354 T 140 140
110 Greece 26355 T 140 140
111 Greece 26356 C 140 140
112 Greece 26357 G 140 140
113 Greece 26358 A 140 140
114 Greece 26359 T A 140 139 Leu39Met
115 Greece 26360 T 140 140
116 Greece 26361 G 140 140
117 Greece 26362 T 140 140
118 Greece 26363 G 140 140
119 Greece 26364 T 140 140
120 Greece 26365 G 140 140
121 Greece 26366 C 140 140
122 Greece 26367 G 140 140
123 Greece 26368 T 139 138
124 Greece 26369 A 139 138
125 Greece 26370 C 139 138
126 Greece 26371 T 139 138
127 Greece 26372 G 139 138
128 Greece 26373 C 139 138
129 Greece 26374 T 139 138
130 Greece 26375 G 139 138
131 Greece 26376 C 139 138
132 Greece 26377 A 139 138
133 Greece 26378 A 139 138
134 Greece 26379 T 139 138
135 Greece 26380 A 139 138
136 Greece 26381 T 139 138
137 Greece 26382 T 139 138
138 Greece 26383 G 139 138
139 Greece 26384 T 139 138
140 Greece 26385 T 139 138
141 Greece 26386 A 139 138
142 Greece 26387 A 139 138
143 Greece 26388 C 139 138
144 Greece 26389 G 139 138
145 Greece 26390 T 139 138
146 Greece 26391 G 139 138
147 Greece 26392 A 139 138
148 Greece 26393 G 139 138
149 Greece 26394 T 139 138
150 Greece 26395 C 139 138
151 Greece 26396 T 139 138
152 Greece 26397 T 139 138
153 Greece 26398 G 139 138
154 Greece 26399 T 139 138
155 Greece 26400 A 139 138
156 Greece 26401 A 139 138
157 Greece 26402 A 139 138
158 Greece 26403 A 139 138
159 Greece 26404 C 139 138
160 Greece 26405 C 139 139
161 Greece 26406 T 139 139
162 Greece 26407 T 139 139
163 Greece 26408 C 139 139
164 Greece 26409 T 139 139
165 Greece 26410 T 139 139
166 Greece 26411 T 139 139
167 Greece 26412 T 139 139
168 Greece 26413 T 139 139
169 Greece 26414 A 139 139
170 Greece 26415 C 139 139
171 Greece 26416 G 139 139
172 Greece 26417 T 139 139
173 Greece 26418 T 139 139
174 Greece 26419 T 139 139
175 Greece 26420 A 139 139
176 Greece 26421 C 139 139
177 Greece 26422 T 139 139
178 Greece 26423 C 139 139
179 Greece 26424 T 139 139
180 Greece 26425 C 139 139
181 Greece 26426 G 139 139
182 Greece 26427 T 139 139
183 Greece 26428 G 139 139
184 Greece 26429 T 139 139
185 Greece 26430 T 139 139
186 Greece 26431 A 139 139
187 Greece 26432 A 139 139
188 Greece 26433 A 139 139
189 Greece 26434 A 139 139
190 Greece 26435 A 139 139
191 Greece 26436 T 139 139
192 Greece 26437 C 139 139
193 Greece 26438 T 139 139
194 Greece 26439 G 139 139
195 Greece 26440 A 139 139
196 Greece 26441 A 139 139
197 Greece 26442 T 139 139
198 Greece 26443 T 139 139
199 Greece 26444 C 139 139
200 Greece 26445 T 139 139
201 Greece 26446 T 139 139
202 Greece 26447 C 139 139
203 Greece 26448 T 139 139
204 Greece 26449 A 139 139
205 Greece 26450 G 139 139
206 Greece 26451 A 139 139
207 Greece 26452 G 139 139
208 Greece 26453 T 139 139
209 Greece 26454 T 139 139
210 Greece 26455 C 139 139
211 Greece 26456 C 139 139
212 Greece 26457 T 139 139
213 Greece 26458 G 139 139
214 Greece 26459 A 139 139
215 Greece 26460 T 139 139
216 Greece 26461 C 139 139
217 Greece 26462 T 139 139
218 Greece 26463 T 139 139
219 Greece 26464 C 139 139
220 Greece 26465 T 139 139
221 Greece 26466 G 139 139
222 Greece 26467 G 139 139
223 Greece 26468 T 139 139
224 Greece 26469 C 139 139
225 Greece 26470 T 139 139
226 Greece 26471 A 138 138
227 Greece 26472 A 138 138