National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.
Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G I K L M N P R S T V Y
*     2                                  
-     228                                  
?                                        
A     12                                  
C     9                                  
D     3                                  
E     6       1                          
F     15                                  
G     3                                  
I     9                                  
K     6                                  
L     43         1       1                
M     3                                  
N     15                                  
P     6                           1      
R     9                                  
S     24                                  
T     12                                  
V     39                                  
Y     12                                  

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Ghana 26245 A 114 114
1 Ghana 26246 T 114 114
2 Ghana 26247 G 114 114
3 Ghana 26248 T 114 114
4 Ghana 26249 A 114 114
5 Ghana 26250 C 114 114
6 Ghana 26251 T 114 113
7 Ghana 26252 C 114 114
8 Ghana 26253 A 114 114
9 Ghana 26254 T 114 114
10 Ghana 26255 T 114 114
11 Ghana 26256 C 114 114
12 Ghana 26257 G 114 114
13 Ghana 26258 T 114 114
14 Ghana 26259 T 114 114
15 Ghana 26260 T 114 114
16 Ghana 26261 C 114 114
17 Ghana 26262 G 114 114
18 Ghana 26263 G 114 114
19 Ghana 26264 A 114 114
20 Ghana 26265 A G 114 113 Glu7Glu
21 Ghana 26266 G 114 114
22 Ghana 26267 A 114 114
23 Ghana 26268 G 114 114
24 Ghana 26269 A 114 114
25 Ghana 26270 C 114 114
26 Ghana 26271 A 114 114
27 Ghana 26272 G 114 114
28 Ghana 26273 G 114 114
29 Ghana 26274 T 114 114
30 Ghana 26275 A 114 114
31 Ghana 26276 C 114 114
32 Ghana 26277 G 114 114
33 Ghana 26278 T 114 114
34 Ghana 26279 T 114 114
35 Ghana 26280 A 114 114
36 Ghana 26281 A 114 114
37 Ghana 26282 T 114 114
38 Ghana 26283 A 114 114
39 Ghana 26284 G 114 114
40 Ghana 26285 T 114 114
41 Ghana 26286 T 114 114
42 Ghana 26287 A 114 114
43 Ghana 26288 A 114 114
44 Ghana 26289 T 114 114
45 Ghana 26290 A 114 114
46 Ghana 26291 G 114 114
47 Ghana 26292 C 114 114
48 Ghana 26293 G 114 114
49 Ghana 26294 T 114 114
50 Ghana 26295 A 114 114
51 Ghana 26296 C 114 114
52 Ghana 26297 T 114 114
53 Ghana 26298 T 114 114
54 Ghana 26299 C 114 114
55 Ghana 26300 T 114 114
56 Ghana 26301 T 114 114
57 Ghana 26302 T 114 114
58 Ghana 26303 T 114 114
59 Ghana 26304 T 114 114
60 Ghana 26305 C 114 114
61 Ghana 26306 T 114 114
62 Ghana 26307 T 114 114
63 Ghana 26308 G 114 114
64 Ghana 26309 C 114 114
65 Ghana 26310 T 114 114
66 Ghana 26311 T 114 114
67 Ghana 26312 T 114 114
68 Ghana 26313 C 113 113
69 Ghana 26314 G 113 113
70 Ghana 26315 T 113 113
71 Ghana 26316 G 112 112
72 Ghana 26317 G 112 112
73 Ghana 26318 T 112 112
74 Ghana 26319 A 112 112
75 Ghana 26320 T 112 112
76 Ghana 26321 T 112 112
77 Ghana 26322 C 112 112
78 Ghana 26323 T 112 112
79 Ghana 26324 T 112 112
80 Ghana 26325 G 112 112
81 Ghana 26326 C 112 112
82 Ghana 26327 T 112 112
83 Ghana 26328 A 112 112
84 Ghana 26329 G 112 112
85 Ghana 26330 T 112 112
86 Ghana 26331 T 112 112
87 Ghana 26332 A 112 112
88 Ghana 26333 C 112 112
89 Ghana 26334 A 112 112
90 Ghana 26335 C 112 112
91 Ghana 26336 T 112 112
92 Ghana 26337 A 112 112
93 Ghana 26338 G 112 112
94 Ghana 26339 C 112 111
95 Ghana 26340 C 112 112
96 Ghana 26341 A 112 112
97 Ghana 26342 T 112 112
98 Ghana 26343 C 112 112
99 Ghana 26344 C 112 112
100 Ghana 26345 T 112 112
101 Ghana 26346 T 112 112
102 Ghana 26347 A 112 112
103 Ghana 26348 C 112 112
104 Ghana 26349 T 112 112
105 Ghana 26350 G 112 112
106 Ghana 26351 C 112 112
107 Ghana 26352 G 112 112
108 Ghana 26353 C 112 112
109 Ghana 26354 T 112 112
110 Ghana 26355 T 112 112
111 Ghana 26356 C 112 112
112 Ghana 26357 G 112 112
113 Ghana 26358 A 112 112
114 Ghana 26359 T 112 112
115 Ghana 26360 T 112 112
116 Ghana 26361 G 112 112
117 Ghana 26362 T 112 112
118 Ghana 26363 G 112 111
119 Ghana 26364 T 112 112
120 Ghana 26365 G 112 112
121 Ghana 26366 C 112 112
122 Ghana 26367 G 112 112
123 Ghana 26368 T 112 112
124 Ghana 26369 A 112 112
125 Ghana 26370 C 112 112
126 Ghana 26371 T 112 112
127 Ghana 26372 G 112 112
128 Ghana 26373 C 112 112
129 Ghana 26374 T 112 112
130 Ghana 26375 G 112 112
131 Ghana 26376 C 112 112
132 Ghana 26377 A 112 112
133 Ghana 26378 A 112 112
134 Ghana 26379 T 112 112
135 Ghana 26380 A 112 112
136 Ghana 26381 T 112 112
137 Ghana 26382 T 112 112
138 Ghana 26383 G 112 112
139 Ghana 26384 T 112 112
140 Ghana 26385 T 112 112
141 Ghana 26386 A 112 112
142 Ghana 26387 A 112 112
143 Ghana 26388 C 112 112
144 Ghana 26389 G 112 112
145 Ghana 26390 T 112 112
146 Ghana 26391 G 112 112
147 Ghana 26392 A 112 112
148 Ghana 26393 G 112 112
149 Ghana 26394 T 112 112
150 Ghana 26395 C 112 112
151 Ghana 26396 T 112 112
152 Ghana 26397 T 112 112
153 Ghana 26398 G 112 112
154 Ghana 26399 T 112 112
155 Ghana 26400 A 112 112
156 Ghana 26401 A 112 112
157 Ghana 26402 A 112 112
158 Ghana 26403 A 112 112
159 Ghana 26404 C 112 112
160 Ghana 26405 C 112 112
161 Ghana 26406 T 112 112
162 Ghana 26407 T 112 112
163 Ghana 26408 C 112 112
164 Ghana 26409 T 112 112
165 Ghana 26410 T 112 112
166 Ghana 26411 T 112 112
167 Ghana 26412 T 112 112
168 Ghana 26413 T 112 112
169 Ghana 26414 A 112 112
170 Ghana 26415 C 112 112
171 Ghana 26416 G 112 112
172 Ghana 26417 T 112 112
173 Ghana 26418 T 112 112
174 Ghana 26419 T 112 112
175 Ghana 26420 A 112 112
176 Ghana 26421 C 112 112
177 Ghana 26422 T 112 112
178 Ghana 26423 C 112 112
179 Ghana 26424 T 112 112
180 Ghana 26425 C 112 112
181 Ghana 26426 G 112 112
182 Ghana 26427 T 112 112
183 Ghana 26428 G 112 112
184 Ghana 26429 T 112 112
185 Ghana 26430 T 112 112
186 Ghana 26431 A 112 112
187 Ghana 26432 A 112 112
188 Ghana 26433 A 112 112
189 Ghana 26434 A 112 112
190 Ghana 26435 A 112 112
191 Ghana 26436 T 112 112
192 Ghana 26437 C T 112 111 Leu65Leu
193 Ghana 26438 T 112 112
194 Ghana 26439 G 112 112
195 Ghana 26440 A 112 112
196 Ghana 26441 A 112 112
197 Ghana 26442 T 112 112
198 Ghana 26443 T 112 112
199 Ghana 26444 C 112 112
200 Ghana 26445 T 112 112
201 Ghana 26446 T 112 112
202 Ghana 26447 C 112 112
203 Ghana 26448 T 112 112
204 Ghana 26449 A 112 112
205 Ghana 26450 G 112 112
206 Ghana 26451 A 112 112
207 Ghana 26452 G 112 112
208 Ghana 26453 T 112 112
209 Ghana 26454 T 112 112
210 Ghana 26455 C T 112 111 Pro71Ser
211 Ghana 26456 C 112 112
212 Ghana 26457 T 112 112
213 Ghana 26458 G 112 112
214 Ghana 26459 A 112 112
215 Ghana 26460 T 112 112
216 Ghana 26461 C T 112 111 Leu73Phe
217 Ghana 26462 T 112 112
218 Ghana 26463 T 112 112
219 Ghana 26464 C 112 112
220 Ghana 26465 T 112 112
221 Ghana 26466 G 112 112
222 Ghana 26467 G 112 112
223 Ghana 26468 T 112 112
224 Ghana 26469 C 112 112
225 Ghana 26470 T 112 112
226 Ghana 26471 A 112 112
227 Ghana 26472 A 112 112