National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G I K L M N P R S T V Y
*     2                                  
-     228                                  
?                                        
A     12 1                             1  
C     9         1                        
D     3                                 1
E     6                                  
F     15         3                        
G     3                                  
I     9                             1    
K     6       1       1                  
L     43         1       3                
M     3                                  
N     15     1                            
P     6                 1     1   1      
R     9             1             1      
S     24         1                 3      
T     12             2             1      
V     39         2   1   1 1           1  
Y     12                                  

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Germany 26245 A 4440 4440
1 Germany 26246 T 4440 4440
2 Germany 26247 G 4440 4440
3 Germany 26248 T 4440 4440
4 Germany 26249 A 4440 4440
5 Germany 26250 C 4440 4440
6 Germany 26251 T 4440 4440
7 Germany 26252 C 4440 4440
8 Germany 26253 A C 4440 4439 Ser3Ser
9 Germany 26254 T 4440 4440
10 Germany 26255 T 4440 4440
11 Germany 26256 C T 4440 4437 Phe4Phe
12 Germany 26257 G 4440 4440
13 Germany 26258 T 4444 4444
14 Germany 26259 T 4444 4444
15 Germany 26260 T 4444 4440
16 Germany 26261 C 4444 4444
17 Germany 26262 G T 4444 4439 Ser6Ser
18 Germany 26263 G 4445 4444
19 Germany 26264 A 4445 4444
20 Germany 26265 A 4445 4444
21 Germany 26266 G 4445 4444
22 Germany 26267 A 4446 4445
23 Germany 26268 G 4446 4444
24 Germany 26269 A 4446 4445
25 Germany 26270 C T 4446 4441 Thr9Ile
26 Germany 26271 A 4446 4446
27 Germany 26272 G 4446 4446
28 Germany 26273 G 4446 4446
29 Germany 26274 T 4446 4446
30 Germany 26275 A 4446 4446
31 Germany 26276 C 4446 4446
32 Germany 26277 G 4446 4446
33 Germany 26278 T 4446 4446
34 Germany 26279 T 4446 4446
35 Germany 26280 A G 4446 4445 Leu12Leu
36 Germany 26281 A 4446 4446
37 Germany 26282 T 4446 4446
38 Germany 26283 A 4447 4447
39 Germany 26284 G 4447 4447
40 Germany 26285 T 4447 4446
41 Germany 26286 T 4447 4447
42 Germany 26287 A 4447 4447
43 Germany 26288 A 4447 4447
44 Germany 26289 T 4447 4447
45 Germany 26290 A 4447 4447
46 Germany 26291 G 4446 4443
47 Germany 26292 C 4435 4434
48 Germany 26293 G 4435 4434
49 Germany 26294 T 4435 4433
50 Germany 26295 A 4435 4433
51 Germany 26296 C 4435 4433
52 Germany 26297 T 4435 4433
53 Germany 26298 T 4435 4433
54 Germany 26299 C 4435 4433
55 Germany 26300 T 4434 4432
56 Germany 26301 T 4435 4433
57 Germany 26302 T 4435 4433
58 Germany 26303 T 4435 4433
59 Germany 26304 T 4435 4433
60 Germany 26305 C 4435 4433
61 Germany 26306 T 4435 4432
62 Germany 26307 T 4434 4431
63 Germany 26308 G 4434 4431
64 Germany 26309 C 4432 4429
65 Germany 26310 T 4426 4423
66 Germany 26311 T 4425 4422
67 Germany 26312 T 4425 4422
68 Germany 26313 C T 4425 4383 Phe23Phe
69 Germany 26314 G A 4425 4421 Val24Met
70 Germany 26315 T 4425 4422
71 Germany 26316 G 4421 4417
72 Germany 26317 G 4420 4416
73 Germany 26318 T 4420 4416
74 Germany 26319 A G 4420 4398 Val25Val
75 Germany 26320 T 4420 4417
76 Germany 26321 T 4420 4417
77 Germany 26322 C T 4420 4416 Phe26Phe
78 Germany 26323 T 4420 4418
79 Germany 26324 T 4420 4418
80 Germany 26325 G 4420 4418
81 Germany 26326 C 4420 4418
82 Germany 26327 T 4420 4418
83 Germany 26328 A 4420 4419
84 Germany 26329 G 4420 4419
85 Germany 26330 T 4420 4419
86 Germany 26331 T 4420 4418
87 Germany 26332 A T 4420 4418 Thr30Ser
88 Germany 26333 C T 4420 4417 Thr30Ile
89 Germany 26334 A 4420 4419
90 Germany 26335 C 4420 4419
91 Germany 26336 T 4420 4419
92 Germany 26337 A 4420 4420
93 Germany 26338 G 4420 4420
94 Germany 26339 C 4420 4420
95 Germany 26340 C T 4420 4419 Ala32Ala
96 Germany 26341 A 4420 4420
97 Germany 26342 T C 4420 4419 Ile33Thr
98 Germany 26343 C 4420 4420
99 Germany 26344 C 4420 4420
100 Germany 26345 T 4420 4420
101 Germany 26346 T 4420 4420
102 Germany 26347 A 4422 4421
103 Germany 26348 C 4443 4442
104 Germany 26349 T 4443 4441
105 Germany 26350 G 4443 4441
106 Germany 26351 C 4442 4440
107 Germany 26352 G 4442 4440
108 Germany 26353 C 4433 4430
109 Germany 26354 T 4433 4430
110 Germany 26355 T 4433 4430
111 Germany 26356 C 4433 4430
112 Germany 26357 G 4433 4430
113 Germany 26358 A 4433 4430
114 Germany 26359 T 4433 4430
115 Germany 26360 T 4433 4428
116 Germany 26361 G 4433 4428
117 Germany 26362 T 4433 4428
118 Germany 26363 G 4432 4427
119 Germany 26364 T 4432 4427
120 Germany 26365 G 4432 4427
121 Germany 26366 C T 4432 4426 Ala41Val
122 Germany 26367 G 4432 4428
123 Germany 26368 T 4432 4428
124 Germany 26369 A 4432 4428
125 Germany 26370 C 4432 4429
126 Germany 26371 T 4432 4429
127 Germany 26372 G T 4432 4413 Cys43Phe
128 Germany 26373 C 4432 4429
129 Germany 26374 T 4432 4429
130 Germany 26375 G 4432 4429
131 Germany 26376 C 4432 4429
132 Germany 26377 A 4432 4428
133 Germany 26378 A 4432 4427
134 Germany 26379 T 4432 4428
135 Germany 26380 A 4432 4429
136 Germany 26381 T 4432 4429
137 Germany 26382 T 4432 4429
138 Germany 26383 G 4432 4430
139 Germany 26384 T 4432 4430
140 Germany 26385 T 4432 4430
141 Germany 26386 A 4432 4429
142 Germany 26387 A 4432 4429
143 Germany 26388 C 4432 4429
144 Germany 26389 G 4432 4429
145 Germany 26390 T 4432 4429
146 Germany 26391 G 4432 4430
147 Germany 26392 A 4432 4431
148 Germany 26393 G 4432 4431
149 Germany 26394 T 4432 4430
150 Germany 26395 C 4432 4430
151 Germany 26396 T 4432 4429
152 Germany 26397 T 4432 4430
153 Germany 26398 G 4432 4430
154 Germany 26399 T 4432 4430
155 Germany 26400 A 4432 4429
156 Germany 26401 A 4432 4429
157 Germany 26402 A 4432 4429
158 Germany 26403 A G 4432 4430 Lys53Lys
159 Germany 26404 C 4432 4431
160 Germany 26405 C 4432 4431
161 Germany 26406 T C 4432 4430 Pro54Pro
162 Germany 26407 T 4432 4431
163 Germany 26408 C 4432 4431
164 Germany 26409 T C 4432 4430 Ser55Ser
165 Germany 26410 T 4432 4431
166 Germany 26411 T 4432 4431
167 Germany 26412 T 4432 4431
168 Germany 26413 T 4432 4431
169 Germany 26414 A 4432 4431
170 Germany 26415 C 4433 4432
171 Germany 26416 G T 4433 4431 Val58Phe
172 Germany 26417 T 4433 4432
173 Germany 26418 T 4432 4431
174 Germany 26419 T 4432 4431
175 Germany 26420 A 4432 4431
176 Germany 26421 C 4432 4431
177 Germany 26422 T 4432 4431
178 Germany 26423 C 4432 4431
179 Germany 26424 T 4432 4431
180 Germany 26425 C 4432 4431
181 Germany 26426 G 4432 4431
182 Germany 26427 T 4432 4432
183 Germany 26428 G T,A 4432 4429 Val62Phe-p.Val62Ile
184 Germany 26429 T 4432 4432
185 Germany 26430 T 4432 4432
186 Germany 26431 A G 4432 4431 Lys63Glu
187 Germany 26432 A 4432 4432
188 Germany 26433 A 4432 4432
189 Germany 26434 A G 4432 4431 Asn64Asp
190 Germany 26435 A 4432 4432
191 Germany 26436 T 4432 4432
192 Germany 26437 C 4432 4432
193 Germany 26438 T 4432 4432
194 Germany 26439 G 4432 4432
195 Germany 26440 A 4432 4432
196 Germany 26441 A 4432 4432
197 Germany 26442 T 4432 4432
198 Germany 26443 T 4432 4432
199 Germany 26444 C 4432 4432
200 Germany 26445 T 4432 4432
201 Germany 26446 T 4309 4306
202 Germany 26447 C T 4303 4286 Ser68Phe
203 Germany 26448 T 4302 4302
204 Germany 26449 A 4300 4300
205 Germany 26450 G T 4300 4299 Arg69Ile
206 Germany 26451 A T 4300 4297 Arg69Ser
207 Germany 26452 G 4300 4300
208 Germany 26453 T 4300 4300
209 Germany 26454 T 4300 4300
210 Germany 26455 C T 4300 4294 Pro71Ser
211 Germany 26456 C T 4300 4284 Pro71Leu
212 Germany 26457 T 4299 4299
213 Germany 26458 G T 4299 4279 Asp72Tyr
214 Germany 26459 A 4299 4299
215 Germany 26460 T 4299 4299
216 Germany 26461 C T 4299 4279 Leu73Phe
217 Germany 26462 T 4299 4299
218 Germany 26463 T 4299 4299
219 Germany 26464 C T 4299 4285 Leu74Leu
220 Germany 26465 T 4296 4296
221 Germany 26466 G A 4292 4291 Leu74Leu
222 Germany 26467 G C 4291 4290 Val75Leu
223 Germany 26468 T 4291 4290
224 Germany 26469 C 4291 4291
225 Germany 26470 T 4290 4290
226 Germany 26471 A 4290 4290
227 Germany 26472 A 4290 4290