National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G I K L M N P R S T V Y
*     2                                  
-     228                                  
?                                        
A     12                                  
C     9                                  
D     3                                  
E     6                                  
F     15                                  
G     3                                  
I     9                                  
K     6                                  
L     43                                  
M     3                                  
N     15                                  
P     6                                  
R     9                                  
S     24                                  
T     12                                  
V     39                                  
Y     12                                  

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Georgia 26245 A 26 25
1 Georgia 26246 T 26 25
2 Georgia 26247 G 26 25
3 Georgia 26248 T 26 25
4 Georgia 26249 A 26 25
5 Georgia 26250 C 26 25
6 Georgia 26251 T 26 25
7 Georgia 26252 C 26 25
8 Georgia 26253 A 26 25
9 Georgia 26254 T 26 25
10 Georgia 26255 T 26 25
11 Georgia 26256 C 26 25
12 Georgia 26257 G 26 25
13 Georgia 26258 T 26 25
14 Georgia 26259 T 26 25
15 Georgia 26260 T 26 25
16 Georgia 26261 C 26 25
17 Georgia 26262 G 26 25
18 Georgia 26263 G 26 25
19 Georgia 26264 A 26 25
20 Georgia 26265 A 26 25
21 Georgia 26266 G 26 25
22 Georgia 26267 A 26 25
23 Georgia 26268 G 26 25
24 Georgia 26269 A 26 25
25 Georgia 26270 C 26 25
26 Georgia 26271 A 26 25
27 Georgia 26272 G 26 25
28 Georgia 26273 G 26 25
29 Georgia 26274 T 26 25
30 Georgia 26275 A 26 25
31 Georgia 26276 C 26 25
32 Georgia 26277 G 26 25
33 Georgia 26278 T 26 25
34 Georgia 26279 T 26 25
35 Georgia 26280 A 26 25
36 Georgia 26281 A 26 25
37 Georgia 26282 T 26 25
38 Georgia 26283 A 26 25
39 Georgia 26284 G 26 25
40 Georgia 26285 T 26 25
41 Georgia 26286 T 26 25
42 Georgia 26287 A 26 25
43 Georgia 26288 A 26 25
44 Georgia 26289 T 26 25
45 Georgia 26290 A 26 25
46 Georgia 26291 G 26 25
47 Georgia 26292 C 26 25
48 Georgia 26293 G 26 25
49 Georgia 26294 T 26 25
50 Georgia 26295 A 26 25
51 Georgia 26296 C 26 25
52 Georgia 26297 T 26 25
53 Georgia 26298 T 26 25
54 Georgia 26299 C 26 25
55 Georgia 26300 T 26 25
56 Georgia 26301 T 26 25
57 Georgia 26302 T 26 25
58 Georgia 26303 T 26 25
59 Georgia 26304 T 26 25
60 Georgia 26305 C 26 25
61 Georgia 26306 T 26 25
62 Georgia 26307 T 26 25
63 Georgia 26308 G 26 25
64 Georgia 26309 C 26 25
65 Georgia 26310 T 26 25
66 Georgia 26311 T 26 25
67 Georgia 26312 T 26 25
68 Georgia 26313 C 26 25
69 Georgia 26314 G 26 25
70 Georgia 26315 T 26 25
71 Georgia 26316 G 26 25
72 Georgia 26317 G 26 25
73 Georgia 26318 T 26 25
74 Georgia 26319 A 26 25
75 Georgia 26320 T 26 25
76 Georgia 26321 T 26 25
77 Georgia 26322 C 26 25
78 Georgia 26323 T 26 25
79 Georgia 26324 T 26 25
80 Georgia 26325 G 26 25
81 Georgia 26326 C 26 25
82 Georgia 26327 T 26 25
83 Georgia 26328 A 26 25
84 Georgia 26329 G 26 25
85 Georgia 26330 T 26 25
86 Georgia 26331 T 26 25
87 Georgia 26332 A 26 25
88 Georgia 26333 C 26 25
89 Georgia 26334 A 26 25
90 Georgia 26335 C 26 25
91 Georgia 26336 T 26 25
92 Georgia 26337 A 26 25
93 Georgia 26338 G 26 25
94 Georgia 26339 C 26 25
95 Georgia 26340 C 26 25
96 Georgia 26341 A 26 25
97 Georgia 26342 T 26 25
98 Georgia 26343 C 26 25
99 Georgia 26344 C 26 25
100 Georgia 26345 T 26 25
101 Georgia 26346 T 26 25
102 Georgia 26347 A 26 25
103 Georgia 26348 C 26 25
104 Georgia 26349 T 26 25
105 Georgia 26350 G 26 25
106 Georgia 26351 C 26 25
107 Georgia 26352 G 26 25
108 Georgia 26353 C 26 25
109 Georgia 26354 T 26 25
110 Georgia 26355 T 26 25
111 Georgia 26356 C 26 25
112 Georgia 26357 G 26 25
113 Georgia 26358 A 26 25
114 Georgia 26359 T 26 25
115 Georgia 26360 T 26 25
116 Georgia 26361 G 26 25
117 Georgia 26362 T 26 25
118 Georgia 26363 G 26 25
119 Georgia 26364 T 26 25
120 Georgia 26365 G 26 25
121 Georgia 26366 C 26 25
122 Georgia 26367 G 26 25
123 Georgia 26368 T 26 25
124 Georgia 26369 A 26 25
125 Georgia 26370 C 26 25
126 Georgia 26371 T 26 25
127 Georgia 26372 G 26 25
128 Georgia 26373 C 26 25
129 Georgia 26374 T 26 25
130 Georgia 26375 G 26 25
131 Georgia 26376 C 26 25
132 Georgia 26377 A 26 25
133 Georgia 26378 A 26 25
134 Georgia 26379 T 26 25
135 Georgia 26380 A 26 25
136 Georgia 26381 T 26 25
137 Georgia 26382 T 26 25
138 Georgia 26383 G 26 25
139 Georgia 26384 T 26 25
140 Georgia 26385 T 26 25
141 Georgia 26386 A 26 25
142 Georgia 26387 A 26 25
143 Georgia 26388 C 26 25
144 Georgia 26389 G 26 25
145 Georgia 26390 T 26 25
146 Georgia 26391 G 26 25
147 Georgia 26392 A 26 25
148 Georgia 26393 G 26 25
149 Georgia 26394 T 26 25
150 Georgia 26395 C 26 25
151 Georgia 26396 T 26 25
152 Georgia 26397 T 26 25
153 Georgia 26398 G 26 25
154 Georgia 26399 T 26 25
155 Georgia 26400 A 26 25
156 Georgia 26401 A 26 25
157 Georgia 26402 A 26 25
158 Georgia 26403 A 26 25
159 Georgia 26404 C 26 25
160 Georgia 26405 C 26 25
161 Georgia 26406 T 26 25
162 Georgia 26407 T 26 25
163 Georgia 26408 C 26 25
164 Georgia 26409 T 26 25
165 Georgia 26410 T 26 25
166 Georgia 26411 T 26 25
167 Georgia 26412 T 26 25
168 Georgia 26413 T 26 25
169 Georgia 26414 A 26 25
170 Georgia 26415 C 26 25
171 Georgia 26416 G 26 25
172 Georgia 26417 T 26 25
173 Georgia 26418 T 26 25
174 Georgia 26419 T 26 25
175 Georgia 26420 A 26 25
176 Georgia 26421 C 26 25
177 Georgia 26422 T 26 25
178 Georgia 26423 C 26 25
179 Georgia 26424 T 26 25
180 Georgia 26425 C 26 25
181 Georgia 26426 G 26 25
182 Georgia 26427 T 26 25
183 Georgia 26428 G 26 25
184 Georgia 26429 T 26 25
185 Georgia 26430 T 26 25
186 Georgia 26431 A 26 25
187 Georgia 26432 A 26 25
188 Georgia 26433 A 26 25
189 Georgia 26434 A 26 25
190 Georgia 26435 A 26 25
191 Georgia 26436 T 26 25
192 Georgia 26437 C 26 25
193 Georgia 26438 T 26 25
194 Georgia 26439 G 26 25
195 Georgia 26440 A 26 25
196 Georgia 26441 A 26 25
197 Georgia 26442 T 26 25
198 Georgia 26443 T 26 25
199 Georgia 26444 C 26 25
200 Georgia 26445 T 26 25
201 Georgia 26446 T 26 25
202 Georgia 26447 C 26 25
203 Georgia 26448 T 26 25
204 Georgia 26449 A 26 25
205 Georgia 26450 G 26 25
206 Georgia 26451 A 26 25
207 Georgia 26452 G 26 25
208 Georgia 26453 T 26 25
209 Georgia 26454 T 26 25
210 Georgia 26455 C 26 25
211 Georgia 26456 C 26 25
212 Georgia 26457 T 26 25
213 Georgia 26458 G 26 25
214 Georgia 26459 A 26 25
215 Georgia 26460 T 26 25
216 Georgia 26461 C 26 25
217 Georgia 26462 T 26 25
218 Georgia 26463 T 26 25
219 Georgia 26464 C 26 25
220 Georgia 26465 T 26 25
221 Georgia 26466 G 26 25
222 Georgia 26467 G 26 25
223 Georgia 26468 T 26 25
224 Georgia 26469 C 26 25
225 Georgia 26470 T 26 25
226 Georgia 26471 A 26 25
227 Georgia 26472 A 26 25