National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G I K L M N P R S T V Y
*     2                                  
-     228                                  
?                                        
A     12                                  
C     9                                  
D     3                                  
E     6                                  
F     15                                  
G     3                                  
I     9                                  
K     6                                  
L     43                                  
M     3                                  
N     15                                  
P     6                                  
R     9                                  
S     24                                  
T     12                                  
V     39                                  
Y     12                                  

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 El_Salvador 26245 A 6 6
1 El_Salvador 26246 T 6 6
2 El_Salvador 26247 G 6 6
3 El_Salvador 26248 T 6 6
4 El_Salvador 26249 A 6 6
5 El_Salvador 26250 C 6 6
6 El_Salvador 26251 T 6 6
7 El_Salvador 26252 C 6 6
8 El_Salvador 26253 A 6 6
9 El_Salvador 26254 T 6 6
10 El_Salvador 26255 T 6 6
11 El_Salvador 26256 C 6 6
12 El_Salvador 26257 G 6 6
13 El_Salvador 26258 T 6 6
14 El_Salvador 26259 T 6 6
15 El_Salvador 26260 T 6 6
16 El_Salvador 26261 C 6 6
17 El_Salvador 26262 G 6 6
18 El_Salvador 26263 G 6 6
19 El_Salvador 26264 A 6 6
20 El_Salvador 26265 A 6 6
21 El_Salvador 26266 G 6 6
22 El_Salvador 26267 A 6 6
23 El_Salvador 26268 G 6 6
24 El_Salvador 26269 A 6 6
25 El_Salvador 26270 C 6 6
26 El_Salvador 26271 A 6 6
27 El_Salvador 26272 G 6 6
28 El_Salvador 26273 G 6 6
29 El_Salvador 26274 T 6 6
30 El_Salvador 26275 A 6 6
31 El_Salvador 26276 C 6 6
32 El_Salvador 26277 G 6 6
33 El_Salvador 26278 T 6 6
34 El_Salvador 26279 T 6 6
35 El_Salvador 26280 A 6 6
36 El_Salvador 26281 A 6 6
37 El_Salvador 26282 T 6 6
38 El_Salvador 26283 A 6 6
39 El_Salvador 26284 G 6 6
40 El_Salvador 26285 T 6 6
41 El_Salvador 26286 T 6 6
42 El_Salvador 26287 A 6 6
43 El_Salvador 26288 A 6 6
44 El_Salvador 26289 T 6 6
45 El_Salvador 26290 A 6 6
46 El_Salvador 26291 G 6 6
47 El_Salvador 26292 C 6 6
48 El_Salvador 26293 G 6 6
49 El_Salvador 26294 T 6 6
50 El_Salvador 26295 A 6 6
51 El_Salvador 26296 C 6 6
52 El_Salvador 26297 T 6 6
53 El_Salvador 26298 T 6 6
54 El_Salvador 26299 C 6 6
55 El_Salvador 26300 T 6 6
56 El_Salvador 26301 T 6 6
57 El_Salvador 26302 T 6 6
58 El_Salvador 26303 T 6 6
59 El_Salvador 26304 T 6 6
60 El_Salvador 26305 C 6 6
61 El_Salvador 26306 T 6 6
62 El_Salvador 26307 T 6 6
63 El_Salvador 26308 G 6 6
64 El_Salvador 26309 C 6 6
65 El_Salvador 26310 T 6 6
66 El_Salvador 26311 T 6 6
67 El_Salvador 26312 T 6 6
68 El_Salvador 26313 C 6 6
69 El_Salvador 26314 G 6 6
70 El_Salvador 26315 T 6 6
71 El_Salvador 26316 G 6 6
72 El_Salvador 26317 G 6 6
73 El_Salvador 26318 T 6 6
74 El_Salvador 26319 A 6 6
75 El_Salvador 26320 T 6 6
76 El_Salvador 26321 T 6 6
77 El_Salvador 26322 C 6 6
78 El_Salvador 26323 T 6 6
79 El_Salvador 26324 T 6 6
80 El_Salvador 26325 G 6 6
81 El_Salvador 26326 C 6 6
82 El_Salvador 26327 T 6 6
83 El_Salvador 26328 A 6 6
84 El_Salvador 26329 G 6 6
85 El_Salvador 26330 T 6 6
86 El_Salvador 26331 T 6 6
87 El_Salvador 26332 A 6 6
88 El_Salvador 26333 C 6 6
89 El_Salvador 26334 A 6 6
90 El_Salvador 26335 C 6 6
91 El_Salvador 26336 T 6 6
92 El_Salvador 26337 A 6 6
93 El_Salvador 26338 G 6 6
94 El_Salvador 26339 C 6 6
95 El_Salvador 26340 C 6 6
96 El_Salvador 26341 A 6 6
97 El_Salvador 26342 T 6 6
98 El_Salvador 26343 C 6 6
99 El_Salvador 26344 C 6 6
100 El_Salvador 26345 T 6 6
101 El_Salvador 26346 T 6 6
102 El_Salvador 26347 A 6 6
103 El_Salvador 26348 C 6 6
104 El_Salvador 26349 T 6 6
105 El_Salvador 26350 G 6 6
106 El_Salvador 26351 C 6 6
107 El_Salvador 26352 G 6 6
108 El_Salvador 26353 C 6 6
109 El_Salvador 26354 T 6 6
110 El_Salvador 26355 T 6 6
111 El_Salvador 26356 C 6 6
112 El_Salvador 26357 G 6 6
113 El_Salvador 26358 A 6 6
114 El_Salvador 26359 T 6 6
115 El_Salvador 26360 T 6 6
116 El_Salvador 26361 G 6 6
117 El_Salvador 26362 T 6 6
118 El_Salvador 26363 G 6 6
119 El_Salvador 26364 T 6 6
120 El_Salvador 26365 G 6 6
121 El_Salvador 26366 C 6 6
122 El_Salvador 26367 G 6 6
123 El_Salvador 26368 T 6 6
124 El_Salvador 26369 A 6 6
125 El_Salvador 26370 C 6 6
126 El_Salvador 26371 T 6 6
127 El_Salvador 26372 G 6 6
128 El_Salvador 26373 C 6 6
129 El_Salvador 26374 T 6 6
130 El_Salvador 26375 G 6 6
131 El_Salvador 26376 C 6 6
132 El_Salvador 26377 A 6 6
133 El_Salvador 26378 A 6 6
134 El_Salvador 26379 T 6 6
135 El_Salvador 26380 A 6 6
136 El_Salvador 26381 T 6 6
137 El_Salvador 26382 T 6 6
138 El_Salvador 26383 G 6 6
139 El_Salvador 26384 T 6 6
140 El_Salvador 26385 T 6 6
141 El_Salvador 26386 A 6 6
142 El_Salvador 26387 A 6 6
143 El_Salvador 26388 C 6 6
144 El_Salvador 26389 G 6 6
145 El_Salvador 26390 T 6 6
146 El_Salvador 26391 G 6 6
147 El_Salvador 26392 A 6 6
148 El_Salvador 26393 G 6 6
149 El_Salvador 26394 T 6 6
150 El_Salvador 26395 C 6 6
151 El_Salvador 26396 T 6 6
152 El_Salvador 26397 T 6 6
153 El_Salvador 26398 G 6 6
154 El_Salvador 26399 T 6 6
155 El_Salvador 26400 A 6 6
156 El_Salvador 26401 A 6 6
157 El_Salvador 26402 A 6 6
158 El_Salvador 26403 A 6 6
159 El_Salvador 26404 C 6 6
160 El_Salvador 26405 C 6 6
161 El_Salvador 26406 T 6 6
162 El_Salvador 26407 T 6 6
163 El_Salvador 26408 C 6 6
164 El_Salvador 26409 T 6 6
165 El_Salvador 26410 T 6 6
166 El_Salvador 26411 T 6 6
167 El_Salvador 26412 T 6 6
168 El_Salvador 26413 T 6 6
169 El_Salvador 26414 A 6 6
170 El_Salvador 26415 C 6 6
171 El_Salvador 26416 G 6 6
172 El_Salvador 26417 T 6 6
173 El_Salvador 26418 T 6 6
174 El_Salvador 26419 T 6 6
175 El_Salvador 26420 A 6 6
176 El_Salvador 26421 C 6 6
177 El_Salvador 26422 T 6 6
178 El_Salvador 26423 C 6 6
179 El_Salvador 26424 T 6 6
180 El_Salvador 26425 C 6 6
181 El_Salvador 26426 G 6 6
182 El_Salvador 26427 T 6 6
183 El_Salvador 26428 G 6 6
184 El_Salvador 26429 T 6 6
185 El_Salvador 26430 T 6 6
186 El_Salvador 26431 A 6 6
187 El_Salvador 26432 A 6 6
188 El_Salvador 26433 A 6 6
189 El_Salvador 26434 A 6 6
190 El_Salvador 26435 A 6 6
191 El_Salvador 26436 T 6 6
192 El_Salvador 26437 C 6 6
193 El_Salvador 26438 T 6 6
194 El_Salvador 26439 G 6 6
195 El_Salvador 26440 A 6 6
196 El_Salvador 26441 A 6 6
197 El_Salvador 26442 T 6 6
198 El_Salvador 26443 T 6 6
199 El_Salvador 26444 C 6 6
200 El_Salvador 26445 T 6 6
201 El_Salvador 26446 T 6 6
202 El_Salvador 26447 C 6 6
203 El_Salvador 26448 T 6 6
204 El_Salvador 26449 A 6 6
205 El_Salvador 26450 G 6 6
206 El_Salvador 26451 A 6 6
207 El_Salvador 26452 G 6 6
208 El_Salvador 26453 T 6 6
209 El_Salvador 26454 T 6 6
210 El_Salvador 26455 C 6 6
211 El_Salvador 26456 C 6 6
212 El_Salvador 26457 T 6 6
213 El_Salvador 26458 G 6 6
214 El_Salvador 26459 A 6 6
215 El_Salvador 26460 T 6 6
216 El_Salvador 26461 C 6 6
217 El_Salvador 26462 T 6 6
218 El_Salvador 26463 T 6 6
219 El_Salvador 26464 C 6 6
220 El_Salvador 26465 T 6 6
221 El_Salvador 26466 G 6 6
222 El_Salvador 26467 G 6 6
223 El_Salvador 26468 T 6 6
224 El_Salvador 26469 C 6 6
225 El_Salvador 26470 T 6 6
226 El_Salvador 26471 A 6 6
227 El_Salvador 26472 A 6 6