National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.
Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G I K L M N P R S T V Y
*     2                                  
-     228                                  
?                                        
A     12 1                             1  
C     9                                  
D     3                                  
E     6                                  
F     15                                  
G     3                                  
I     9                                  
K     6                                  
L     43         1       3     1          
M     3                                  
N     15                                  
P     6                 1                
R 1   9           1             1        
S     24         1                        
T     12 1           1               1    
V     39         1         1           1  
Y     12                                  

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Egypt 26245 A 366 366
1 Egypt 26246 T 366 366
2 Egypt 26247 G 366 366
3 Egypt 26248 T 366 366
4 Egypt 26249 A 366 366
5 Egypt 26250 C 366 366
6 Egypt 26251 T 366 366
7 Egypt 26252 C 366 366
8 Egypt 26253 A 366 366
9 Egypt 26254 T 366 366
10 Egypt 26255 T 366 366
11 Egypt 26256 C 366 366
12 Egypt 26257 G T 366 329 Val5Phe
13 Egypt 26258 T 366 366
14 Egypt 26259 T 366 366
15 Egypt 26260 T 366 366
16 Egypt 26261 C 366 366
17 Egypt 26262 G 366 366
18 Egypt 26263 G 366 366
19 Egypt 26264 A 366 366
20 Egypt 26265 A 366 366
21 Egypt 26266 G 366 366
22 Egypt 26267 A 366 366
23 Egypt 26268 G 366 366
24 Egypt 26269 A 366 366
25 Egypt 26270 C T 366 365 Thr9Ile
26 Egypt 26271 A 366 366
27 Egypt 26272 G 366 366
28 Egypt 26273 G 366 366
29 Egypt 26274 T 366 366
30 Egypt 26275 A 366 366
31 Egypt 26276 C 366 366
32 Egypt 26277 G 366 366
33 Egypt 26278 T 366 366
34 Egypt 26279 T 366 366
35 Egypt 26280 A 366 366
36 Egypt 26281 A 366 366
37 Egypt 26282 T 366 366
38 Egypt 26283 A 366 366
39 Egypt 26284 G 366 366
40 Egypt 26285 T 366 366
41 Egypt 26286 T C 366 365 Val14Val
42 Egypt 26287 A 366 366
43 Egypt 26288 A 366 366
44 Egypt 26289 T 366 366
45 Egypt 26290 A 366 366
46 Egypt 26291 G 366 366
47 Egypt 26292 C 366 366
48 Egypt 26293 G 366 366
49 Egypt 26294 T 366 366
50 Egypt 26295 A 366 366
51 Egypt 26296 C 366 366
52 Egypt 26297 T 366 366
53 Egypt 26298 T 366 366
54 Egypt 26299 C 366 366
55 Egypt 26300 T 366 366
56 Egypt 26301 T 366 366
57 Egypt 26302 T 366 366
58 Egypt 26303 T 366 365
59 Egypt 26304 T 366 366
60 Egypt 26305 C 366 366
61 Egypt 26306 T 365 365
62 Egypt 26307 T 365 365
63 Egypt 26308 G 365 365
64 Egypt 26309 C 365 365
65 Egypt 26310 T 365 365
66 Egypt 26311 T 365 365
67 Egypt 26312 T 365 365
68 Egypt 26313 C 365 365
69 Egypt 26314 G A 365 364 Val24Met
70 Egypt 26315 T 365 365
71 Egypt 26316 G 365 365
72 Egypt 26317 G 365 365
73 Egypt 26318 T 365 365
74 Egypt 26319 A 365 365
75 Egypt 26320 T 365 365
76 Egypt 26321 T 365 365
77 Egypt 26322 C 365 365
78 Egypt 26323 T 365 365
79 Egypt 26324 T 365 365
80 Egypt 26325 G 365 365
81 Egypt 26326 C 365 365
82 Egypt 26327 T 365 365
83 Egypt 26328 A C 365 364 Leu28Leu
84 Egypt 26329 G 365 365
85 Egypt 26330 T 365 364
86 Egypt 26331 T 365 364
87 Egypt 26332 A 365 364
88 Egypt 26333 C 365 364
89 Egypt 26334 A 365 364
90 Egypt 26335 C 365 364
91 Egypt 26336 T 365 364
92 Egypt 26337 A G 365 363 Leu31Leu
93 Egypt 26338 G 365 363
94 Egypt 26339 C T 365 362 Ala32Val
95 Egypt 26340 C A 365 361 Ala32Ala
96 Egypt 26341 A 365 362
97 Egypt 26342 T 365 361
98 Egypt 26343 C 365 361
99 Egypt 26344 C T 365 360 Leu34Phe
100 Egypt 26345 T 365 361
101 Egypt 26346 T 365 361
102 Egypt 26347 A G 365 360 Thr35Ala
103 Egypt 26348 C 365 361
104 Egypt 26349 T C 365 360 Thr35Thr
105 Egypt 26350 G 365 359
106 Egypt 26351 C 365 357
107 Egypt 26352 G 365 357
108 Egypt 26353 C 365 358
109 Egypt 26354 T C 365 358 Leu37Pro
110 Egypt 26355 T A 365 359 Leu37Leu
111 Egypt 26356 C T,G 365 358 Arg38*-p.Arg38Gly
112 Egypt 26357 G 365 363
113 Egypt 26358 A T 365 363 Arg38Arg
114 Egypt 26359 T 365 364
115 Egypt 26360 T 365 364
116 Egypt 26361 G 365 364
117 Egypt 26362 T 365 364
118 Egypt 26363 G 365 364
119 Egypt 26364 T 365 364
120 Egypt 26365 G 365 364
121 Egypt 26366 C 365 364
122 Egypt 26367 G 365 364
123 Egypt 26368 T 365 365
124 Egypt 26369 A 365 365
125 Egypt 26370 C 365 365
126 Egypt 26371 T 365 365
127 Egypt 26372 G 365 365
128 Egypt 26373 C 365 365
129 Egypt 26374 T 365 365
130 Egypt 26375 G 365 365
131 Egypt 26376 C 365 364
132 Egypt 26377 A 365 365
133 Egypt 26378 A 365 365
134 Egypt 26379 T 365 365
135 Egypt 26380 A 365 365
136 Egypt 26381 T 365 365
137 Egypt 26382 T 365 365
138 Egypt 26383 G 365 365
139 Egypt 26384 T 365 365
140 Egypt 26385 T 365 365
141 Egypt 26386 A 365 365
142 Egypt 26387 A 365 365
143 Egypt 26388 C 365 365
144 Egypt 26389 G 365 365
145 Egypt 26390 T 365 365
146 Egypt 26391 G 365 365
147 Egypt 26392 A 365 365
148 Egypt 26393 G 365 365
149 Egypt 26394 T 365 365
150 Egypt 26395 C 365 365
151 Egypt 26396 T 365 365
152 Egypt 26397 T 365 365
153 Egypt 26398 G 365 365
154 Egypt 26399 T 365 365
155 Egypt 26400 A 365 365
156 Egypt 26401 A 365 365
157 Egypt 26402 A 365 365
158 Egypt 26403 A 365 365
159 Egypt 26404 C 365 365
160 Egypt 26405 C 365 365
161 Egypt 26406 T 365 365
162 Egypt 26407 T 365 365
163 Egypt 26408 C 365 365
164 Egypt 26409 T 365 365
165 Egypt 26410 T 365 365
166 Egypt 26411 T 365 365
167 Egypt 26412 T 365 365
168 Egypt 26413 T 365 365
169 Egypt 26414 A 365 365
170 Egypt 26415 C 365 365
171 Egypt 26416 G 365 365
172 Egypt 26417 T 365 365
173 Egypt 26418 T 365 365
174 Egypt 26419 T 365 365
175 Egypt 26420 A 365 365
176 Egypt 26421 C 365 365
177 Egypt 26422 T 365 365
178 Egypt 26423 C 365 365
179 Egypt 26424 T 366 366
180 Egypt 26425 C 366 366
181 Egypt 26426 G 366 366
182 Egypt 26427 T 366 366
183 Egypt 26428 G 366 366
184 Egypt 26429 T 366 366
185 Egypt 26430 T 366 366
186 Egypt 26431 A 366 366
187 Egypt 26432 A 366 366
188 Egypt 26433 A 366 366
189 Egypt 26434 A 366 366
190 Egypt 26435 A 366 366
191 Egypt 26436 T 366 366
192 Egypt 26437 C 366 366
193 Egypt 26438 T 366 366
194 Egypt 26439 G 366 366
195 Egypt 26440 A 366 366
196 Egypt 26441 A 366 366
197 Egypt 26442 T 366 366
198 Egypt 26443 T 366 366
199 Egypt 26444 C 366 366
200 Egypt 26445 T 366 366
201 Egypt 26446 T 366 366
202 Egypt 26447 C T 366 364 Ser68Phe
203 Egypt 26448 T 366 366
204 Egypt 26449 A 366 366
205 Egypt 26450 G 366 366
206 Egypt 26451 A 366 366
207 Egypt 26452 G 366 366
208 Egypt 26453 T 366 366
209 Egypt 26454 T 366 366
210 Egypt 26455 C 366 366
211 Egypt 26456 C T 366 364 Pro71Leu
212 Egypt 26457 T 366 366
213 Egypt 26458 G 366 364
214 Egypt 26459 A 366 362
215 Egypt 26460 T 366 366
216 Egypt 26461 C 366 366
217 Egypt 26462 T 366 366
218 Egypt 26463 T 366 364
219 Egypt 26464 C 366 366
220 Egypt 26465 T 366 366
221 Egypt 26466 G 366 362
222 Egypt 26467 G 366 365
223 Egypt 26468 T 366 366
224 Egypt 26469 C 366 366
225 Egypt 26470 T 366 366
226 Egypt 26471 A 366 366
227 Egypt 26472 A 366 366