National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G I K L M N P R S T V Y
*     2                                  
-     228                                  
?                                        
A     12                                  
C     9                                  
D     3                                  
E     6                                  
F     15         1                        
G     3                                  
I     9                                  
K     6                                  
L     43                                  
M     3                                  
N     15                                  
P     6                                  
R     9                                  
S     24                                  
T     12                                  
V     39                               1  
Y     12                                  

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Czech_Republic 26245 A 170 170
1 Czech_Republic 26246 T 170 170
2 Czech_Republic 26247 G 170 170
3 Czech_Republic 26248 T 170 170
4 Czech_Republic 26249 A 170 170
5 Czech_Republic 26250 C 170 170
6 Czech_Republic 26251 T 170 170
7 Czech_Republic 26252 C 170 170
8 Czech_Republic 26253 A 170 170
9 Czech_Republic 26254 T 170 170
10 Czech_Republic 26255 T 170 170
11 Czech_Republic 26256 C 170 170
12 Czech_Republic 26257 G 170 170
13 Czech_Republic 26258 T 170 170
14 Czech_Republic 26259 T 170 170
15 Czech_Republic 26260 T 170 170
16 Czech_Republic 26261 C 170 170
17 Czech_Republic 26262 G 170 170
18 Czech_Republic 26263 G 170 170
19 Czech_Republic 26264 A 170 170
20 Czech_Republic 26265 A 170 170
21 Czech_Republic 26266 G 170 170
22 Czech_Republic 26267 A 170 170
23 Czech_Republic 26268 G 170 170
24 Czech_Republic 26269 A 170 170
25 Czech_Republic 26270 C 170 170
26 Czech_Republic 26271 A 170 170
27 Czech_Republic 26272 G 170 170
28 Czech_Republic 26273 G 170 170
29 Czech_Republic 26274 T 170 170
30 Czech_Republic 26275 A 170 170
31 Czech_Republic 26276 C 170 170
32 Czech_Republic 26277 G 170 170
33 Czech_Republic 26278 T 170 170
34 Czech_Republic 26279 T 170 170
35 Czech_Republic 26280 A 170 170
36 Czech_Republic 26281 A 170 170
37 Czech_Republic 26282 T 170 170
38 Czech_Republic 26283 A 170 170
39 Czech_Republic 26284 G 170 170
40 Czech_Republic 26285 T 170 170
41 Czech_Republic 26286 T 170 170
42 Czech_Republic 26287 A 170 170
43 Czech_Republic 26288 A 170 170
44 Czech_Republic 26289 T 170 170
45 Czech_Republic 26290 A 170 170
46 Czech_Republic 26291 G 170 170
47 Czech_Republic 26292 C 170 170
48 Czech_Republic 26293 G 170 170
49 Czech_Republic 26294 T 170 170
50 Czech_Republic 26295 A 170 170
51 Czech_Republic 26296 C 170 170
52 Czech_Republic 26297 T 170 170
53 Czech_Republic 26298 T 170 170
54 Czech_Republic 26299 C 170 170
55 Czech_Republic 26300 T 170 170
56 Czech_Republic 26301 T 170 170
57 Czech_Republic 26302 T 170 170
58 Czech_Republic 26303 T 170 170
59 Czech_Republic 26304 T 170 170
60 Czech_Republic 26305 C 170 170
61 Czech_Republic 26306 T 170 170
62 Czech_Republic 26307 T 170 170
63 Czech_Republic 26308 G 170 170
64 Czech_Republic 26309 C 170 170
65 Czech_Republic 26310 T 170 170
66 Czech_Republic 26311 T 170 170
67 Czech_Republic 26312 T 170 170
68 Czech_Republic 26313 C T 170 166 Phe23Phe
69 Czech_Republic 26314 G 170 170
70 Czech_Republic 26315 T 170 170
71 Czech_Republic 26316 G 170 170
72 Czech_Republic 26317 G 170 170
73 Czech_Republic 26318 T 170 170
74 Czech_Republic 26319 A G 170 169 Val25Val
75 Czech_Republic 26320 T 170 170
76 Czech_Republic 26321 T 170 170
77 Czech_Republic 26322 C 170 170
78 Czech_Republic 26323 T 170 170
79 Czech_Republic 26324 T 170 170
80 Czech_Republic 26325 G 170 170
81 Czech_Republic 26326 C 170 170
82 Czech_Republic 26327 T 170 170
83 Czech_Republic 26328 A 170 170
84 Czech_Republic 26329 G 170 170
85 Czech_Republic 26330 T 170 170
86 Czech_Republic 26331 T 170 170
87 Czech_Republic 26332 A 170 170
88 Czech_Republic 26333 C 170 170
89 Czech_Republic 26334 A 170 170
90 Czech_Republic 26335 C 170 169
91 Czech_Republic 26336 T 170 170
92 Czech_Republic 26337 A 170 170
93 Czech_Republic 26338 G 170 170
94 Czech_Republic 26339 C 170 170
95 Czech_Republic 26340 C 170 170
96 Czech_Republic 26341 A 170 170
97 Czech_Republic 26342 T 170 170
98 Czech_Republic 26343 C 170 170
99 Czech_Republic 26344 C 170 170
100 Czech_Republic 26345 T 170 170
101 Czech_Republic 26346 T 170 170
102 Czech_Republic 26347 A 170 170
103 Czech_Republic 26348 C 170 170
104 Czech_Republic 26349 T 170 170
105 Czech_Republic 26350 G 170 170
106 Czech_Republic 26351 C 170 170
107 Czech_Republic 26352 G 170 170
108 Czech_Republic 26353 C 170 170
109 Czech_Republic 26354 T 170 170
110 Czech_Republic 26355 T 170 170
111 Czech_Republic 26356 C 170 170
112 Czech_Republic 26357 G 170 170
113 Czech_Republic 26358 A 170 170
114 Czech_Republic 26359 T 170 170
115 Czech_Republic 26360 T 170 170
116 Czech_Republic 26361 G 170 170
117 Czech_Republic 26362 T 170 170
118 Czech_Republic 26363 G 170 170
119 Czech_Republic 26364 T 170 170
120 Czech_Republic 26365 G 170 170
121 Czech_Republic 26366 C 170 170
122 Czech_Republic 26367 G 170 170
123 Czech_Republic 26368 T 170 170
124 Czech_Republic 26369 A 170 170
125 Czech_Republic 26370 C 170 170
126 Czech_Republic 26371 T 170 170
127 Czech_Republic 26372 G 170 170
128 Czech_Republic 26373 C 170 170
129 Czech_Republic 26374 T 170 170
130 Czech_Republic 26375 G 170 170
131 Czech_Republic 26376 C 170 170
132 Czech_Republic 26377 A 170 170
133 Czech_Republic 26378 A 170 170
134 Czech_Republic 26379 T 170 170
135 Czech_Republic 26380 A 170 170
136 Czech_Republic 26381 T 170 170
137 Czech_Republic 26382 T 170 170
138 Czech_Republic 26383 G 170 170
139 Czech_Republic 26384 T 170 170
140 Czech_Republic 26385 T 170 170
141 Czech_Republic 26386 A 170 170
142 Czech_Republic 26387 A 170 170
143 Czech_Republic 26388 C 170 170
144 Czech_Republic 26389 G 170 170
145 Czech_Republic 26390 T 170 170
146 Czech_Republic 26391 G 170 170
147 Czech_Republic 26392 A 170 170
148 Czech_Republic 26393 G 170 170
149 Czech_Republic 26394 T 170 170
150 Czech_Republic 26395 C 170 170
151 Czech_Republic 26396 T 170 170
152 Czech_Republic 26397 T 170 170
153 Czech_Republic 26398 G 170 170
154 Czech_Republic 26399 T 170 170
155 Czech_Republic 26400 A 170 170
156 Czech_Republic 26401 A 170 170
157 Czech_Republic 26402 A 170 170
158 Czech_Republic 26403 A 170 170
159 Czech_Republic 26404 C 170 170
160 Czech_Republic 26405 C 170 170
161 Czech_Republic 26406 T 170 170
162 Czech_Republic 26407 T 170 170
163 Czech_Republic 26408 C 170 170
164 Czech_Republic 26409 T 170 169
165 Czech_Republic 26410 T 170 170
166 Czech_Republic 26411 T 170 170
167 Czech_Republic 26412 T 170 170
168 Czech_Republic 26413 T 170 170
169 Czech_Republic 26414 A 170 170
170 Czech_Republic 26415 C 170 170
171 Czech_Republic 26416 G 170 170
172 Czech_Republic 26417 T 170 170
173 Czech_Republic 26418 T 170 170
174 Czech_Republic 26419 T 170 170
175 Czech_Republic 26420 A 170 170
176 Czech_Republic 26421 C 170 170
177 Czech_Republic 26422 T 170 170
178 Czech_Republic 26423 C 170 170
179 Czech_Republic 26424 T 170 170
180 Czech_Republic 26425 C 170 170
181 Czech_Republic 26426 G 170 170
182 Czech_Republic 26427 T 170 170
183 Czech_Republic 26428 G 170 170
184 Czech_Republic 26429 T 170 170
185 Czech_Republic 26430 T 170 170
186 Czech_Republic 26431 A 170 170
187 Czech_Republic 26432 A 170 170
188 Czech_Republic 26433 A 170 170
189 Czech_Republic 26434 A 170 170
190 Czech_Republic 26435 A 170 170
191 Czech_Republic 26436 T 170 170
192 Czech_Republic 26437 C 170 170
193 Czech_Republic 26438 T 170 170
194 Czech_Republic 26439 G 170 170
195 Czech_Republic 26440 A 170 170
196 Czech_Republic 26441 A 170 170
197 Czech_Republic 26442 T 170 170
198 Czech_Republic 26443 T 170 170
199 Czech_Republic 26444 C 170 170
200 Czech_Republic 26445 T 170 170
201 Czech_Republic 26446 T 170 170
202 Czech_Republic 26447 C 170 170
203 Czech_Republic 26448 T 170 170
204 Czech_Republic 26449 A 170 170
205 Czech_Republic 26450 G 170 170
206 Czech_Republic 26451 A 170 170
207 Czech_Republic 26452 G 170 170
208 Czech_Republic 26453 T 170 170
209 Czech_Republic 26454 T 170 170
210 Czech_Republic 26455 C 170 170
211 Czech_Republic 26456 C 170 170
212 Czech_Republic 26457 T 170 170
213 Czech_Republic 26458 G 170 170
214 Czech_Republic 26459 A 170 170
215 Czech_Republic 26460 T 170 170
216 Czech_Republic 26461 C 170 170
217 Czech_Republic 26462 T 170 170
218 Czech_Republic 26463 T 170 170
219 Czech_Republic 26464 C 170 170
220 Czech_Republic 26465 T 170 170
221 Czech_Republic 26466 G 170 170
222 Czech_Republic 26467 G 170 170
223 Czech_Republic 26468 T 170 170
224 Czech_Republic 26469 C 170 170
225 Czech_Republic 26470 T 170 170
226 Czech_Republic 26471 A 170 170
227 Czech_Republic 26472 A 170 170