National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G I K L M N P R S T V Y
*     2                                  
-     228                                  
?                                        
A     12                                  
C     9                                  
D     3                                  
E     6                                  
F     15                                  
G     3                                  
I     9                                  
K     6                                  
L     43                                  
M     3                                  
N     15                                  
P     6                                  
R     9                                  
S     24                                  
T     12                                  
V     39                                  
Y     12                                  

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Cyprus 26245 A 8 8
1 Cyprus 26246 T 8 8
2 Cyprus 26247 G 8 8
3 Cyprus 26248 T 8 8
4 Cyprus 26249 A 8 8
5 Cyprus 26250 C 8 8
6 Cyprus 26251 T 8 8
7 Cyprus 26252 C 8 8
8 Cyprus 26253 A 8 8
9 Cyprus 26254 T 8 8
10 Cyprus 26255 T 8 8
11 Cyprus 26256 C 8 8
12 Cyprus 26257 G 8 8
13 Cyprus 26258 T 8 8
14 Cyprus 26259 T 8 8
15 Cyprus 26260 T 8 8
16 Cyprus 26261 C 8 8
17 Cyprus 26262 G 8 8
18 Cyprus 26263 G 8 8
19 Cyprus 26264 A 8 8
20 Cyprus 26265 A 8 8
21 Cyprus 26266 G 8 8
22 Cyprus 26267 A 8 8
23 Cyprus 26268 G 8 8
24 Cyprus 26269 A 8 8
25 Cyprus 26270 C 8 8
26 Cyprus 26271 A 8 8
27 Cyprus 26272 G 8 8
28 Cyprus 26273 G 8 8
29 Cyprus 26274 T 8 8
30 Cyprus 26275 A 8 8
31 Cyprus 26276 C 8 8
32 Cyprus 26277 G 8 8
33 Cyprus 26278 T 8 8
34 Cyprus 26279 T 8 8
35 Cyprus 26280 A 8 8
36 Cyprus 26281 A 8 8
37 Cyprus 26282 T 8 8
38 Cyprus 26283 A 8 8
39 Cyprus 26284 G 8 8
40 Cyprus 26285 T 8 8
41 Cyprus 26286 T 8 8
42 Cyprus 26287 A 8 8
43 Cyprus 26288 A 8 8
44 Cyprus 26289 T 8 8
45 Cyprus 26290 A 8 8
46 Cyprus 26291 G 8 8
47 Cyprus 26292 C 8 8
48 Cyprus 26293 G 8 8
49 Cyprus 26294 T 8 8
50 Cyprus 26295 A 8 8
51 Cyprus 26296 C 8 8
52 Cyprus 26297 T 8 8
53 Cyprus 26298 T 8 8
54 Cyprus 26299 C 8 8
55 Cyprus 26300 T 8 8
56 Cyprus 26301 T 8 8
57 Cyprus 26302 T 8 8
58 Cyprus 26303 T 8 8
59 Cyprus 26304 T 8 8
60 Cyprus 26305 C 8 8
61 Cyprus 26306 T 8 8
62 Cyprus 26307 T 8 8
63 Cyprus 26308 G 8 8
64 Cyprus 26309 C 8 8
65 Cyprus 26310 T 8 8
66 Cyprus 26311 T 8 8
67 Cyprus 26312 T 8 8
68 Cyprus 26313 C 8 8
69 Cyprus 26314 G 8 8
70 Cyprus 26315 T 8 8
71 Cyprus 26316 G 8 8
72 Cyprus 26317 G 8 8
73 Cyprus 26318 T 8 8
74 Cyprus 26319 A 8 8
75 Cyprus 26320 T 8 8
76 Cyprus 26321 T 8 8
77 Cyprus 26322 C 8 8
78 Cyprus 26323 T 8 8
79 Cyprus 26324 T 8 8
80 Cyprus 26325 G 8 8
81 Cyprus 26326 C 8 8
82 Cyprus 26327 T 8 8
83 Cyprus 26328 A 8 8
84 Cyprus 26329 G 8 8
85 Cyprus 26330 T 8 8
86 Cyprus 26331 T 8 8
87 Cyprus 26332 A 8 8
88 Cyprus 26333 C 8 8
89 Cyprus 26334 A 8 8
90 Cyprus 26335 C 8 8
91 Cyprus 26336 T 8 8
92 Cyprus 26337 A 8 8
93 Cyprus 26338 G 8 8
94 Cyprus 26339 C 8 8
95 Cyprus 26340 C 8 8
96 Cyprus 26341 A 8 8
97 Cyprus 26342 T 8 8
98 Cyprus 26343 C 8 8
99 Cyprus 26344 C 8 8
100 Cyprus 26345 T 8 8
101 Cyprus 26346 T 8 8
102 Cyprus 26347 A 8 8
103 Cyprus 26348 C 8 8
104 Cyprus 26349 T 8 8
105 Cyprus 26350 G 8 8
106 Cyprus 26351 C 8 8
107 Cyprus 26352 G 8 8
108 Cyprus 26353 C 8 8
109 Cyprus 26354 T 8 8
110 Cyprus 26355 T 8 8
111 Cyprus 26356 C 8 8
112 Cyprus 26357 G 8 8
113 Cyprus 26358 A 8 8
114 Cyprus 26359 T 8 8
115 Cyprus 26360 T 8 8
116 Cyprus 26361 G 8 8
117 Cyprus 26362 T 8 8
118 Cyprus 26363 G 8 8
119 Cyprus 26364 T 8 8
120 Cyprus 26365 G 8 8
121 Cyprus 26366 C 8 8
122 Cyprus 26367 G 8 8
123 Cyprus 26368 T 8 8
124 Cyprus 26369 A 8 8
125 Cyprus 26370 C 8 8
126 Cyprus 26371 T 8 8
127 Cyprus 26372 G 8 8
128 Cyprus 26373 C 8 8
129 Cyprus 26374 T 8 8
130 Cyprus 26375 G 8 8
131 Cyprus 26376 C 8 8
132 Cyprus 26377 A 8 8
133 Cyprus 26378 A 8 8
134 Cyprus 26379 T 8 8
135 Cyprus 26380 A 8 8
136 Cyprus 26381 T 8 8
137 Cyprus 26382 T 8 8
138 Cyprus 26383 G 8 8
139 Cyprus 26384 T 8 8
140 Cyprus 26385 T 8 8
141 Cyprus 26386 A 8 8
142 Cyprus 26387 A 8 8
143 Cyprus 26388 C 8 8
144 Cyprus 26389 G 8 8
145 Cyprus 26390 T 8 8
146 Cyprus 26391 G 8 8
147 Cyprus 26392 A 8 8
148 Cyprus 26393 G 8 8
149 Cyprus 26394 T 8 8
150 Cyprus 26395 C 8 8
151 Cyprus 26396 T 8 8
152 Cyprus 26397 T 8 8
153 Cyprus 26398 G 8 8
154 Cyprus 26399 T 8 8
155 Cyprus 26400 A 8 8
156 Cyprus 26401 A 8 8
157 Cyprus 26402 A 8 8
158 Cyprus 26403 A 8 8
159 Cyprus 26404 C 8 8
160 Cyprus 26405 C 8 8
161 Cyprus 26406 T 8 8
162 Cyprus 26407 T 8 8
163 Cyprus 26408 C 8 8
164 Cyprus 26409 T 8 8
165 Cyprus 26410 T 8 8
166 Cyprus 26411 T 8 8
167 Cyprus 26412 T 8 8
168 Cyprus 26413 T 8 8
169 Cyprus 26414 A 8 8
170 Cyprus 26415 C 8 8
171 Cyprus 26416 G 8 8
172 Cyprus 26417 T 8 8
173 Cyprus 26418 T 8 8
174 Cyprus 26419 T 8 8
175 Cyprus 26420 A 8 8
176 Cyprus 26421 C 8 8
177 Cyprus 26422 T 8 8
178 Cyprus 26423 C 8 8
179 Cyprus 26424 T 8 8
180 Cyprus 26425 C 8 8
181 Cyprus 26426 G 8 8
182 Cyprus 26427 T 8 8
183 Cyprus 26428 G 8 8
184 Cyprus 26429 T 8 8
185 Cyprus 26430 T 8 8
186 Cyprus 26431 A 8 8
187 Cyprus 26432 A 8 8
188 Cyprus 26433 A 8 8
189 Cyprus 26434 A 8 8
190 Cyprus 26435 A 8 8
191 Cyprus 26436 T 8 8
192 Cyprus 26437 C 8 8
193 Cyprus 26438 T 8 8
194 Cyprus 26439 G 8 8
195 Cyprus 26440 A 8 8
196 Cyprus 26441 A 8 8
197 Cyprus 26442 T 8 8
198 Cyprus 26443 T 8 8
199 Cyprus 26444 C 8 8
200 Cyprus 26445 T 8 8
201 Cyprus 26446 T 8 8
202 Cyprus 26447 C 8 8
203 Cyprus 26448 T 8 8
204 Cyprus 26449 A 8 8
205 Cyprus 26450 G 8 8
206 Cyprus 26451 A 8 8
207 Cyprus 26452 G 8 8
208 Cyprus 26453 T 8 8
209 Cyprus 26454 T 8 8
210 Cyprus 26455 C 8 8
211 Cyprus 26456 C 8 8
212 Cyprus 26457 T 8 8
213 Cyprus 26458 G 8 8
214 Cyprus 26459 A 8 8
215 Cyprus 26460 T 8 8
216 Cyprus 26461 C 8 8
217 Cyprus 26462 T 8 8
218 Cyprus 26463 T 8 8
219 Cyprus 26464 C 8 8
220 Cyprus 26465 T 8 8
221 Cyprus 26466 G 8 8
222 Cyprus 26467 G 8 8
223 Cyprus 26468 T 8 8
224 Cyprus 26469 C 8 8
225 Cyprus 26470 T 8 8
226 Cyprus 26471 A 8 8
227 Cyprus 26472 A 8 8