National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G I K L M N P R S T V Y
*     2                                  
-     228                                  
?                                        
A     12                                  
C     9                                  
D     3                                  
E     6                                  
F     15                                  
G     3                                  
I     9                                  
K     6                                  
L     43                                  
M     3                                  
N     15                                  
P     6                 1                
R     9                                  
S     24                                  
T     12                                  
V     39                                  
Y     12                                  

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Croatia 26245 A 50 50
1 Croatia 26246 T 50 50
2 Croatia 26247 G 50 50
3 Croatia 26248 T 50 50
4 Croatia 26249 A 50 50
5 Croatia 26250 C 50 50
6 Croatia 26251 T 50 50
7 Croatia 26252 C 50 50
8 Croatia 26253 A 50 50
9 Croatia 26254 T 50 50
10 Croatia 26255 T 50 50
11 Croatia 26256 C 50 50
12 Croatia 26257 G 50 50
13 Croatia 26258 T 50 50
14 Croatia 26259 T 50 50
15 Croatia 26260 T 50 50
16 Croatia 26261 C 50 50
17 Croatia 26262 G 50 50
18 Croatia 26263 G 50 50
19 Croatia 26264 A 50 50
20 Croatia 26265 A 50 50
21 Croatia 26266 G 50 50
22 Croatia 26267 A 50 50
23 Croatia 26268 G 50 50
24 Croatia 26269 A 50 50
25 Croatia 26270 C 50 50
26 Croatia 26271 A 50 50
27 Croatia 26272 G 50 50
28 Croatia 26273 G 50 50
29 Croatia 26274 T 50 50
30 Croatia 26275 A 50 50
31 Croatia 26276 C 50 50
32 Croatia 26277 G 50 50
33 Croatia 26278 T 50 50
34 Croatia 26279 T 50 50
35 Croatia 26280 A 50 50
36 Croatia 26281 A 50 50
37 Croatia 26282 T 50 50
38 Croatia 26283 A 50 50
39 Croatia 26284 G 50 50
40 Croatia 26285 T 50 50
41 Croatia 26286 T 50 50
42 Croatia 26287 A 50 50
43 Croatia 26288 A 50 50
44 Croatia 26289 T 50 50
45 Croatia 26290 A 50 50
46 Croatia 26291 G 50 50
47 Croatia 26292 C 50 50
48 Croatia 26293 G 50 50
49 Croatia 26294 T 50 50
50 Croatia 26295 A 50 50
51 Croatia 26296 C 50 50
52 Croatia 26297 T 50 50
53 Croatia 26298 T 50 50
54 Croatia 26299 C 50 50
55 Croatia 26300 T 50 50
56 Croatia 26301 T 50 50
57 Croatia 26302 T 50 50
58 Croatia 26303 T 50 50
59 Croatia 26304 T 50 50
60 Croatia 26305 C 50 50
61 Croatia 26306 T 50 50
62 Croatia 26307 T 50 50
63 Croatia 26308 G 50 50
64 Croatia 26309 C 50 50
65 Croatia 26310 T 50 50
66 Croatia 26311 T 50 50
67 Croatia 26312 T 50 50
68 Croatia 26313 C 50 50
69 Croatia 26314 G 50 50
70 Croatia 26315 T 50 50
71 Croatia 26316 G 50 50
72 Croatia 26317 G 50 50
73 Croatia 26318 T 50 50
74 Croatia 26319 A 50 50
75 Croatia 26320 T 50 50
76 Croatia 26321 T 50 50
77 Croatia 26322 C 50 50
78 Croatia 26323 T 50 50
79 Croatia 26324 T 50 50
80 Croatia 26325 G 50 50
81 Croatia 26326 C 50 50
82 Croatia 26327 T 50 50
83 Croatia 26328 A 50 50
84 Croatia 26329 G 50 50
85 Croatia 26330 T 50 50
86 Croatia 26331 T 50 50
87 Croatia 26332 A 50 50
88 Croatia 26333 C 50 50
89 Croatia 26334 A 50 50
90 Croatia 26335 C 50 50
91 Croatia 26336 T 50 50
92 Croatia 26337 A 50 50
93 Croatia 26338 G 50 50
94 Croatia 26339 C 50 50
95 Croatia 26340 C 50 50
96 Croatia 26341 A 50 50
97 Croatia 26342 T 50 50
98 Croatia 26343 C 50 50
99 Croatia 26344 C 50 50
100 Croatia 26345 T 50 50
101 Croatia 26346 T 50 50
102 Croatia 26347 A 50 50
103 Croatia 26348 C 50 50
104 Croatia 26349 T 50 50
105 Croatia 26350 G 50 50
106 Croatia 26351 C 50 50
107 Croatia 26352 G 50 50
108 Croatia 26353 C 50 50
109 Croatia 26354 T 50 50
110 Croatia 26355 T 50 50
111 Croatia 26356 C 50 50
112 Croatia 26357 G 50 50
113 Croatia 26358 A 50 50
114 Croatia 26359 T 50 50
115 Croatia 26360 T 50 50
116 Croatia 26361 G 50 50
117 Croatia 26362 T 50 50
118 Croatia 26363 G 50 50
119 Croatia 26364 T 50 50
120 Croatia 26365 G 50 50
121 Croatia 26366 C 50 50
122 Croatia 26367 G 50 50
123 Croatia 26368 T 50 50
124 Croatia 26369 A 50 50
125 Croatia 26370 C 50 50
126 Croatia 26371 T 50 50
127 Croatia 26372 G 50 50
128 Croatia 26373 C 50 50
129 Croatia 26374 T 50 50
130 Croatia 26375 G 50 50
131 Croatia 26376 C 50 50
132 Croatia 26377 A 50 50
133 Croatia 26378 A 50 50
134 Croatia 26379 T 50 50
135 Croatia 26380 A 50 50
136 Croatia 26381 T 50 50
137 Croatia 26382 T 50 50
138 Croatia 26383 G 50 50
139 Croatia 26384 T 50 50
140 Croatia 26385 T 50 50
141 Croatia 26386 A 50 50
142 Croatia 26387 A 50 50
143 Croatia 26388 C 50 50
144 Croatia 26389 G 50 50
145 Croatia 26390 T 50 50
146 Croatia 26391 G 50 50
147 Croatia 26392 A 50 50
148 Croatia 26393 G 50 50
149 Croatia 26394 T 50 50
150 Croatia 26395 C 50 50
151 Croatia 26396 T 50 50
152 Croatia 26397 T 50 50
153 Croatia 26398 G 50 50
154 Croatia 26399 T 50 50
155 Croatia 26400 A 50 50
156 Croatia 26401 A 50 50
157 Croatia 26402 A 50 50
158 Croatia 26403 A 50 50
159 Croatia 26404 C 50 50
160 Croatia 26405 C 50 50
161 Croatia 26406 T 50 50
162 Croatia 26407 T 50 50
163 Croatia 26408 C 50 50
164 Croatia 26409 T 50 50
165 Croatia 26410 T 50 50
166 Croatia 26411 T 50 50
167 Croatia 26412 T 50 50
168 Croatia 26413 T 50 50
169 Croatia 26414 A 50 50
170 Croatia 26415 C 50 50
171 Croatia 26416 G 50 50
172 Croatia 26417 T 50 50
173 Croatia 26418 T 50 50
174 Croatia 26419 T 50 50
175 Croatia 26420 A 50 50
176 Croatia 26421 C 50 50
177 Croatia 26422 T 50 50
178 Croatia 26423 C 50 50
179 Croatia 26424 T 50 50
180 Croatia 26425 C 50 50
181 Croatia 26426 G 50 50
182 Croatia 26427 T 50 50
183 Croatia 26428 G 50 50
184 Croatia 26429 T 50 50
185 Croatia 26430 T 50 50
186 Croatia 26431 A 50 50
187 Croatia 26432 A 50 50
188 Croatia 26433 A 50 50
189 Croatia 26434 A 50 50
190 Croatia 26435 A 50 50
191 Croatia 26436 T 50 50
192 Croatia 26437 C 50 50
193 Croatia 26438 T 50 50
194 Croatia 26439 G 50 50
195 Croatia 26440 A 50 50
196 Croatia 26441 A 50 50
197 Croatia 26442 T 50 50
198 Croatia 26443 T 50 50
199 Croatia 26444 C 50 50
200 Croatia 26445 T 50 50
201 Croatia 26446 T 50 50
202 Croatia 26447 C 50 50
203 Croatia 26448 T 50 50
204 Croatia 26449 A 50 50
205 Croatia 26450 G 50 50
206 Croatia 26451 A 50 50
207 Croatia 26452 G 50 50
208 Croatia 26453 T 50 50
209 Croatia 26454 T 50 50
210 Croatia 26455 C 50 50
211 Croatia 26456 C T 50 46 Pro71Leu
212 Croatia 26457 T 50 50
213 Croatia 26458 G 50 50
214 Croatia 26459 A 50 50
215 Croatia 26460 T 50 50
216 Croatia 26461 C 50 50
217 Croatia 26462 T 50 50
218 Croatia 26463 T 50 50
219 Croatia 26464 C 50 50
220 Croatia 26465 T 50 50
221 Croatia 26466 G 50 50
222 Croatia 26467 G 50 50
223 Croatia 26468 T 50 50
224 Croatia 26469 C 50 50
225 Croatia 26470 T 50 50
226 Croatia 26471 A 50 50
227 Croatia 26472 A 50 50