National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G I K L M N P R S T V Y
*     2                                  
-     228                                  
?                                        
A     12                                  
C     9                                  
D     3                                  
E     6                                  
F     15                                  
G     3                                  
I     9                                  
K     6                                  
L     43                                  
M     3                                  
N     15                                  
P     6                                  
R     9                                  
S     24                                  
T     12                                  
V     39                                  
Y     12                                  

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 CotedIvoire 26245 A 65 65
1 CotedIvoire 26246 T 65 65
2 CotedIvoire 26247 G 65 65
3 CotedIvoire 26248 T 65 65
4 CotedIvoire 26249 A 65 65
5 CotedIvoire 26250 C 65 65
6 CotedIvoire 26251 T 65 65
7 CotedIvoire 26252 C 65 65
8 CotedIvoire 26253 A 65 65
9 CotedIvoire 26254 T 65 65
10 CotedIvoire 26255 T 65 65
11 CotedIvoire 26256 C 65 65
12 CotedIvoire 26257 G 65 65
13 CotedIvoire 26258 T 65 65
14 CotedIvoire 26259 T 65 65
15 CotedIvoire 26260 T 65 65
16 CotedIvoire 26261 C 65 65
17 CotedIvoire 26262 G 65 65
18 CotedIvoire 26263 G 65 65
19 CotedIvoire 26264 A 65 65
20 CotedIvoire 26265 A 65 65
21 CotedIvoire 26266 G 65 65
22 CotedIvoire 26267 A 65 65
23 CotedIvoire 26268 G 65 65
24 CotedIvoire 26269 A 65 65
25 CotedIvoire 26270 C 65 65
26 CotedIvoire 26271 A 65 65
27 CotedIvoire 26272 G 65 65
28 CotedIvoire 26273 G 65 65
29 CotedIvoire 26274 T 65 64
30 CotedIvoire 26275 A 65 65
31 CotedIvoire 26276 C 65 65
32 CotedIvoire 26277 G 65 65
33 CotedIvoire 26278 T 65 65
34 CotedIvoire 26279 T 65 65
35 CotedIvoire 26280 A 65 65
36 CotedIvoire 26281 A 65 65
37 CotedIvoire 26282 T 65 65
38 CotedIvoire 26283 A 65 65
39 CotedIvoire 26284 G 65 65
40 CotedIvoire 26285 T 65 65
41 CotedIvoire 26286 T 65 65
42 CotedIvoire 26287 A 65 65
43 CotedIvoire 26288 A 65 65
44 CotedIvoire 26289 T 65 65
45 CotedIvoire 26290 A 65 65
46 CotedIvoire 26291 G 65 65
47 CotedIvoire 26292 C 65 65
48 CotedIvoire 26293 G 65 65
49 CotedIvoire 26294 T 65 65
50 CotedIvoire 26295 A 65 65
51 CotedIvoire 26296 C 65 65
52 CotedIvoire 26297 T 65 65
53 CotedIvoire 26298 T 65 65
54 CotedIvoire 26299 C 65 65
55 CotedIvoire 26300 T 65 65
56 CotedIvoire 26301 T 65 65
57 CotedIvoire 26302 T 65 65
58 CotedIvoire 26303 T 65 65
59 CotedIvoire 26304 T 65 65
60 CotedIvoire 26305 C 65 65
61 CotedIvoire 26306 T 65 65
62 CotedIvoire 26307 T 65 65
63 CotedIvoire 26308 G 65 65
64 CotedIvoire 26309 C 65 65
65 CotedIvoire 26310 T 65 65
66 CotedIvoire 26311 T 65 65
67 CotedIvoire 26312 T 65 65
68 CotedIvoire 26313 C 65 65
69 CotedIvoire 26314 G 65 65
70 CotedIvoire 26315 T 65 65
71 CotedIvoire 26316 G 65 65
72 CotedIvoire 26317 G 65 65
73 CotedIvoire 26318 T 65 65
74 CotedIvoire 26319 A 65 65
75 CotedIvoire 26320 T 65 65
76 CotedIvoire 26321 T 65 65
77 CotedIvoire 26322 C 65 65
78 CotedIvoire 26323 T 65 65
79 CotedIvoire 26324 T 65 65
80 CotedIvoire 26325 G 65 65
81 CotedIvoire 26326 C 65 65
82 CotedIvoire 26327 T 65 65
83 CotedIvoire 26328 A 65 65
84 CotedIvoire 26329 G 65 65
85 CotedIvoire 26330 T 65 65
86 CotedIvoire 26331 T 65 65
87 CotedIvoire 26332 A 65 65
88 CotedIvoire 26333 C 65 65
89 CotedIvoire 26334 A 65 65
90 CotedIvoire 26335 C 65 65
91 CotedIvoire 26336 T 65 65
92 CotedIvoire 26337 A 65 65
93 CotedIvoire 26338 G 65 65
94 CotedIvoire 26339 C 65 65
95 CotedIvoire 26340 C 65 65
96 CotedIvoire 26341 A 65 65
97 CotedIvoire 26342 T 65 65
98 CotedIvoire 26343 C 65 65
99 CotedIvoire 26344 C 65 65
100 CotedIvoire 26345 T 65 65
101 CotedIvoire 26346 T 65 65
102 CotedIvoire 26347 A 65 65
103 CotedIvoire 26348 C 65 65
104 CotedIvoire 26349 T 65 65
105 CotedIvoire 26350 G 65 65
106 CotedIvoire 26351 C 65 65
107 CotedIvoire 26352 G 65 65
108 CotedIvoire 26353 C 65 65
109 CotedIvoire 26354 T 65 65
110 CotedIvoire 26355 T 65 65
111 CotedIvoire 26356 C 65 65
112 CotedIvoire 26357 G 65 65
113 CotedIvoire 26358 A 65 65
114 CotedIvoire 26359 T 65 65
115 CotedIvoire 26360 T 65 65
116 CotedIvoire 26361 G 65 65
117 CotedIvoire 26362 T 65 65
118 CotedIvoire 26363 G 65 65
119 CotedIvoire 26364 T 65 65
120 CotedIvoire 26365 G 65 65
121 CotedIvoire 26366 C 65 65
122 CotedIvoire 26367 G 65 65
123 CotedIvoire 26368 T 65 65
124 CotedIvoire 26369 A 65 65
125 CotedIvoire 26370 C 65 65
126 CotedIvoire 26371 T 65 65
127 CotedIvoire 26372 G 65 65
128 CotedIvoire 26373 C 65 65
129 CotedIvoire 26374 T 65 65
130 CotedIvoire 26375 G 65 65
131 CotedIvoire 26376 C 65 65
132 CotedIvoire 26377 A 65 65
133 CotedIvoire 26378 A 65 65
134 CotedIvoire 26379 T 65 65
135 CotedIvoire 26380 A 65 65
136 CotedIvoire 26381 T 65 65
137 CotedIvoire 26382 T 65 65
138 CotedIvoire 26383 G 65 65
139 CotedIvoire 26384 T 65 65
140 CotedIvoire 26385 T 65 65
141 CotedIvoire 26386 A 65 65
142 CotedIvoire 26387 A 65 65
143 CotedIvoire 26388 C 65 65
144 CotedIvoire 26389 G 65 65
145 CotedIvoire 26390 T 65 65
146 CotedIvoire 26391 G 65 65
147 CotedIvoire 26392 A 65 65
148 CotedIvoire 26393 G 65 65
149 CotedIvoire 26394 T 65 65
150 CotedIvoire 26395 C 65 65
151 CotedIvoire 26396 T 65 65
152 CotedIvoire 26397 T 65 65
153 CotedIvoire 26398 G 65 65
154 CotedIvoire 26399 T 65 65
155 CotedIvoire 26400 A 65 65
156 CotedIvoire 26401 A 65 65
157 CotedIvoire 26402 A 65 65
158 CotedIvoire 26403 A 65 65
159 CotedIvoire 26404 C 65 65
160 CotedIvoire 26405 C 65 65
161 CotedIvoire 26406 T 65 65
162 CotedIvoire 26407 T 65 65
163 CotedIvoire 26408 C 65 65
164 CotedIvoire 26409 T 65 58
165 CotedIvoire 26410 T 65 65
166 CotedIvoire 26411 T 65 65
167 CotedIvoire 26412 T 65 65
168 CotedIvoire 26413 T 65 65
169 CotedIvoire 26414 A 65 65
170 CotedIvoire 26415 C 65 65
171 CotedIvoire 26416 G 65 65
172 CotedIvoire 26417 T 65 65
173 CotedIvoire 26418 T 65 65
174 CotedIvoire 26419 T 65 65
175 CotedIvoire 26420 A 65 65
176 CotedIvoire 26421 C 65 65
177 CotedIvoire 26422 T 65 65
178 CotedIvoire 26423 C 65 65
179 CotedIvoire 26424 T 65 65
180 CotedIvoire 26425 C 65 65
181 CotedIvoire 26426 G 65 65
182 CotedIvoire 26427 T 65 65
183 CotedIvoire 26428 G 65 65
184 CotedIvoire 26429 T 65 65
185 CotedIvoire 26430 T 65 65
186 CotedIvoire 26431 A 65 65
187 CotedIvoire 26432 A 65 65
188 CotedIvoire 26433 A 65 65
189 CotedIvoire 26434 A 65 65
190 CotedIvoire 26435 A 65 65
191 CotedIvoire 26436 T 65 65
192 CotedIvoire 26437 C 65 65
193 CotedIvoire 26438 T 65 65
194 CotedIvoire 26439 G 65 65
195 CotedIvoire 26440 A 65 65
196 CotedIvoire 26441 A 65 65
197 CotedIvoire 26442 T 65 65
198 CotedIvoire 26443 T 65 65
199 CotedIvoire 26444 C 65 65
200 CotedIvoire 26445 T 65 65
201 CotedIvoire 26446 T 65 65
202 CotedIvoire 26447 C 65 65
203 CotedIvoire 26448 T 65 65
204 CotedIvoire 26449 A 65 65
205 CotedIvoire 26450 G 65 65
206 CotedIvoire 26451 A 65 65
207 CotedIvoire 26452 G 65 65
208 CotedIvoire 26453 T 65 65
209 CotedIvoire 26454 T 65 65
210 CotedIvoire 26455 C 65 65
211 CotedIvoire 26456 C 65 65
212 CotedIvoire 26457 T 65 65
213 CotedIvoire 26458 G 65 65
214 CotedIvoire 26459 A 65 65
215 CotedIvoire 26460 T 65 65
216 CotedIvoire 26461 C 65 65
217 CotedIvoire 26462 T 65 65
218 CotedIvoire 26463 T 65 65
219 CotedIvoire 26464 C 65 65
220 CotedIvoire 26465 T 65 65
221 CotedIvoire 26466 G 65 65
222 CotedIvoire 26467 G 65 65
223 CotedIvoire 26468 T 65 65
224 CotedIvoire 26469 C 65 65
225 CotedIvoire 26470 T 65 65
226 CotedIvoire 26471 A 65 65
227 CotedIvoire 26472 A 65 65