National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.
Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G I K L M N P R S T V W Y
*     2                                    
-     228                                    
?                                          
A     12 1                                  
C     9                                 1  
D     3                     1             1
E     6       1                            
F     15                 2                  
G     3                                    
I     9         1                          
K     6             1                      
L     43         2       2                  
M     3                                    
N     15                     1              
P     6                       1   1        
R     9             1   1                  
S     24   1                       2        
T     12             1                      
V     39 1       1                     4    
W                                          
Y     12                                   1

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 China 26245 A 940 940
1 China 26246 T 940 940
2 China 26247 G 940 940
3 China 26248 T 940 940
4 China 26249 A 940 940
5 China 26250 C 940 940
6 China 26251 T 940 940
7 China 26252 C 940 940
8 China 26253 A 940 940
9 China 26254 T C 940 939 Phe4Leu
10 China 26255 T 940 940
11 China 26256 C 941 941
12 China 26257 G 941 941
13 China 26258 T 941 941
14 China 26259 T 941 941
15 China 26260 T 941 941
16 China 26261 C 941 941
17 China 26262 G 941 941
18 China 26263 G 941 941
19 China 26264 A 941 941
20 China 26265 A 941 941
21 China 26266 G 941 941
22 China 26267 A 941 941
23 China 26268 G A 941 940 Glu8Glu
24 China 26269 A 941 941
25 China 26270 C 941 941
26 China 26271 A 941 941
27 China 26272 G 941 941
28 China 26273 G 941 941
29 China 26274 T 941 941
30 China 26275 A 941 941
31 China 26276 C 941 941
32 China 26277 G 941 941
33 China 26278 T 941 941
34 China 26279 T 941 941
35 China 26280 A 941 941
36 China 26281 A 941 941
37 China 26282 T 941 941
38 China 26283 A 941 941
39 China 26284 G 941 941
40 China 26285 T 941 941
41 China 26286 T 941 941
42 China 26287 A 941 941
43 China 26288 A 941 941
44 China 26289 T 941 941
45 China 26290 A 941 941
46 China 26291 G 940 940
47 China 26292 C 939 939
48 China 26293 G 939 939
49 China 26294 T 939 939
50 China 26295 A 939 939
51 China 26296 C 939 939
52 China 26297 T 939 939
53 China 26298 T 939 939
54 China 26299 C 939 939
55 China 26300 T 939 939
56 China 26301 T 939 939
57 China 26302 T 939 939
58 China 26303 T 939 939
59 China 26304 T 939 939
60 China 26305 C 939 939
61 China 26306 T 938 938
62 China 26307 T 938 938
63 China 26308 G 938 938
64 China 26309 C 938 938
65 China 26310 T 938 938
66 China 26311 T 938 938
67 China 26312 T 938 938
68 China 26313 C 938 938
69 China 26314 G 938 938
70 China 26315 T 938 938
71 China 26316 G 938 938
72 China 26317 G 938 938
73 China 26318 T 937 937
74 China 26319 A 937 937
75 China 26320 T 937 937
76 China 26321 T 937 937
77 China 26322 C 937 937
78 China 26323 T 936 936
79 China 26324 T 936 936
80 China 26325 G 936 936
81 China 26326 C T 936 935 Leu28Leu
82 China 26327 T 936 936
83 China 26328 A 936 936
84 China 26329 G 937 937
85 China 26330 T C 937 936 Val29Ala
86 China 26331 T C 937 922 Val29Val
87 China 26332 A 937 937
88 China 26333 C T 937 935 Thr30Ile
89 China 26334 A 937 937
90 China 26335 C 937 937
91 China 26336 T 937 937
92 China 26337 A 937 937
93 China 26338 G 937 937
94 China 26339 C 937 937
95 China 26340 C T 937 936 Ala32Ala
96 China 26341 A 937 937
97 China 26342 T 937 937
98 China 26343 C 937 937
99 China 26344 C T 937 936 Leu34Phe
100 China 26345 T 937 937
101 China 26346 T 938 938
102 China 26347 A 938 938
103 China 26348 C 938 938
104 China 26349 T 938 938
105 China 26350 G 938 938
106 China 26351 C 938 938
107 China 26352 G 938 938
108 China 26353 C 938 938
109 China 26354 T 938 938
110 China 26355 T 938 938
111 China 26356 C 938 938
112 China 26357 G 938 938
113 China 26358 A 938 938
114 China 26359 T 938 938
115 China 26360 T 938 938
116 China 26361 G 938 938
117 China 26362 T 938 938
118 China 26363 G 938 938
119 China 26364 T 938 938
120 China 26365 G 938 938
121 China 26366 C 938 938
122 China 26367 G 938 938
123 China 26368 T 938 938
124 China 26369 A 938 938
125 China 26370 C T 938 933 Tyr42Tyr
126 China 26371 T 938 935
127 China 26372 G 938 937
128 China 26373 C G 938 936 Cys43Trp
129 China 26374 T 938 937
130 China 26375 G 938 937
131 China 26376 C 938 937
132 China 26377 A 938 935
133 China 26378 A 938 937
134 China 26379 T 938 938
135 China 26380 A T 938 936 Ile46Phe
136 China 26381 T 938 938
137 China 26382 T 938 938
138 China 26383 G 938 938
139 China 26384 T 938 938
140 China 26385 T 938 938
141 China 26386 A 938 938
142 China 26387 A 938 938
143 China 26388 C T 938 937 Asn48Asn
144 China 26389 G 938 938
145 China 26390 T 938 937
146 China 26391 G 938 937
147 China 26392 A 938 937
148 China 26393 G 938 937
149 China 26394 T 938 937
150 China 26395 C T 938 932 Leu51Phe
151 China 26396 T 938 937
152 China 26397 T A 938 932 Leu51Leu
153 China 26398 G 938 938
154 China 26399 T 938 938
155 China 26400 A G,T 938 925 Val52Val-p.Val52Val
156 China 26401 A 938 938
157 China 26402 A T 938 936 Lys53Ile
158 China 26403 A 938 937
159 China 26404 C T 938 936 Pro54Ser
160 China 26405 C 938 937
161 China 26406 T G 938 935 Pro54Pro
162 China 26407 T 938 936
163 China 26408 C 938 936
164 China 26409 T 938 937
165 China 26410 T C 938 936 Phe56Leu
166 China 26411 T 938 936
167 China 26412 T 938 936
168 China 26413 T 938 936
169 China 26414 A 938 936
170 China 26415 C 938 936
171 China 26416 G 938 936
172 China 26417 T 938 936
173 China 26418 T C 938 930 Val58Val
174 China 26419 T 938 936
175 China 26420 A 938 936
176 China 26421 C 938 936
177 China 26422 T 938 936
178 China 26423 C 938 936
179 China 26424 T A,C 939 930 Ser60Ser-p.Ser60Ser
180 China 26425 C 939 937
181 China 26426 G T 939 936 Arg61Leu
182 China 26427 T 939 937
183 China 26428 G 939 937
184 China 26429 T 939 937
185 China 26430 T 939 937
186 China 26431 A 939 937
187 China 26432 A 939 937
188 China 26433 A 939 937
189 China 26434 A 939 937
190 China 26435 A 939 937
191 China 26436 T 939 937
192 China 26437 C 939 939
193 China 26438 T 939 939
194 China 26439 G 939 939
195 China 26440 A 939 939
196 China 26441 A 939 939
197 China 26442 T 939 939
198 China 26443 T 939 939
199 China 26444 C 939 939
200 China 26445 T 939 939
201 China 26446 T 939 939
202 China 26447 C G 939 924 Ser68Cys
203 China 26448 T 939 939
204 China 26449 A 939 939
205 China 26450 G T 939 938 Arg69Ile
206 China 26451 A 939 939
207 China 26452 G 938 938
208 China 26453 T 938 938
209 China 26454 T 938 938
210 China 26455 C 938 938
211 China 26456 C 938 938
212 China 26457 T 938 938
213 China 26458 G T,A 938 936 Asp72Tyr-p.Asp72Asn
214 China 26459 A 938 938
215 China 26460 T 938 938
216 China 26461 C 938 938
217 China 26462 T 938 938
218 China 26463 T 938 938
219 China 26464 C 938 938
220 China 26465 T 938 938
221 China 26466 G 938 938
222 China 26467 G T 938 937 Val75Phe
223 China 26468 T 937 937
224 China 26469 C 937 937
225 China 26470 T 937 937
226 China 26471 A 937 937
227 China 26472 A 937 937