National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G I K L M N P R S T V Y
*     2                                  
-     228                                  
?                                        
A     12                                  
C     9         1                        
D     3                                  
E     6       1                          
F     15         1                        
G     3                                  
I     9                                  
K     6                                  
L     43         1       1                
M     3                                  
N     15                     1            
P     6                                  
R     9                                  
S     24         1                 1      
T     12                                  
V     39         2                        
Y     12                                  

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Chile 26245 A 966 966
1 Chile 26246 T 966 966
2 Chile 26247 G 966 966
3 Chile 26248 T 966 966
4 Chile 26249 A 966 966
5 Chile 26250 C 966 966
6 Chile 26251 T 966 966
7 Chile 26252 C 966 966
8 Chile 26253 A 966 966
9 Chile 26254 T 966 966
10 Chile 26255 T 966 966
11 Chile 26256 C T 966 965 Phe4Phe
12 Chile 26257 G 966 966
13 Chile 26258 T 966 966
14 Chile 26259 T 966 966
15 Chile 26260 T 966 966
16 Chile 26261 C 966 966
17 Chile 26262 G T 966 965 Ser6Ser
18 Chile 26263 G 966 966
19 Chile 26264 A 966 966
20 Chile 26265 A 966 966
21 Chile 26266 G 966 966
22 Chile 26267 A 966 966
23 Chile 26268 G A 966 965 Glu8Glu
24 Chile 26269 A 966 966
25 Chile 26270 C 966 966
26 Chile 26271 A 966 966
27 Chile 26272 G 966 966
28 Chile 26273 G 966 966
29 Chile 26274 T 966 966
30 Chile 26275 A 966 966
31 Chile 26276 C 966 966
32 Chile 26277 G 966 966
33 Chile 26278 T 966 966
34 Chile 26279 T 966 966
35 Chile 26280 A 966 966
36 Chile 26281 A 966 966
37 Chile 26282 T 966 966
38 Chile 26283 A 966 966
39 Chile 26284 G 966 966
40 Chile 26285 T 966 966
41 Chile 26286 T 966 966
42 Chile 26287 A 966 966
43 Chile 26288 A 966 966
44 Chile 26289 T 966 966
45 Chile 26290 A 966 966
46 Chile 26291 G 966 966
47 Chile 26292 C 966 966
48 Chile 26293 G 966 966
49 Chile 26294 T 966 966
50 Chile 26295 A 966 966
51 Chile 26296 C 966 966
52 Chile 26297 T 966 966
53 Chile 26298 T 966 966
54 Chile 26299 C 966 966
55 Chile 26300 T 966 966
56 Chile 26301 T 966 966
57 Chile 26302 T 966 966
58 Chile 26303 T 966 966
59 Chile 26304 T 966 966
60 Chile 26305 C 966 966
61 Chile 26306 T 966 966
62 Chile 26307 T 966 966
63 Chile 26308 G 966 966
64 Chile 26309 C 966 966
65 Chile 26310 T 966 966
66 Chile 26311 T 966 966
67 Chile 26312 T 966 966
68 Chile 26313 C 966 966
69 Chile 26314 G 966 966
70 Chile 26315 T 966 966
71 Chile 26316 G 965 965
72 Chile 26317 G 965 965
73 Chile 26318 T 965 965
74 Chile 26319 A 965 965
75 Chile 26320 T 965 965
76 Chile 26321 T 965 965
77 Chile 26322 C 965 965
78 Chile 26323 T 965 965
79 Chile 26324 T 965 965
80 Chile 26325 G 965 965
81 Chile 26326 C 965 965
82 Chile 26327 T 965 965
83 Chile 26328 A 965 965
84 Chile 26329 G 965 965
85 Chile 26330 T 965 965
86 Chile 26331 T 965 965
87 Chile 26332 A 965 965
88 Chile 26333 C 965 965
89 Chile 26334 A 965 965
90 Chile 26335 C 965 965
91 Chile 26336 T 965 965
92 Chile 26337 A 965 965
93 Chile 26338 G 965 965
94 Chile 26339 C 965 965
95 Chile 26340 C 965 965
96 Chile 26341 A 965 965
97 Chile 26342 T 965 965
98 Chile 26343 C 965 965
99 Chile 26344 C 965 965
100 Chile 26345 T 965 965
101 Chile 26346 T 965 965
102 Chile 26347 A 965 965
103 Chile 26348 C 965 965
104 Chile 26349 T 965 965
105 Chile 26350 G 965 965
106 Chile 26351 C 965 965
107 Chile 26352 G 965 965
108 Chile 26353 C 965 965
109 Chile 26354 T 965 965
110 Chile 26355 T 965 965
111 Chile 26356 C 965 965
112 Chile 26357 G 965 965
113 Chile 26358 A 965 965
114 Chile 26359 T 965 965
115 Chile 26360 T 965 965
116 Chile 26361 G 965 965
117 Chile 26362 T 965 965
118 Chile 26363 G 965 965
119 Chile 26364 T 965 965
120 Chile 26365 G 965 965
121 Chile 26366 C 965 964
122 Chile 26367 G 965 965
123 Chile 26368 T 965 965
124 Chile 26369 A 965 965
125 Chile 26370 C 965 965
126 Chile 26371 T 965 965
127 Chile 26372 G T 965 958 Cys43Phe
128 Chile 26373 C 965 965
129 Chile 26374 T 965 965
130 Chile 26375 G 965 965
131 Chile 26376 C 965 964
132 Chile 26377 A 965 965
133 Chile 26378 A 965 965
134 Chile 26379 T 965 965
135 Chile 26380 A 965 965
136 Chile 26381 T 965 965
137 Chile 26382 T 965 965
138 Chile 26383 G 965 965
139 Chile 26384 T 965 965
140 Chile 26385 T 965 965
141 Chile 26386 A 965 965
142 Chile 26387 A 965 965
143 Chile 26388 C T 965 964 Asn48Asn
144 Chile 26389 G 965 965
145 Chile 26390 T 965 965
146 Chile 26391 G 965 965
147 Chile 26392 A 965 965
148 Chile 26393 G 965 965
149 Chile 26394 T 965 965
150 Chile 26395 C 965 965
151 Chile 26396 T 965 965
152 Chile 26397 T 965 965
153 Chile 26398 G 965 965
154 Chile 26399 T 965 965
155 Chile 26400 A 965 965
156 Chile 26401 A 965 965
157 Chile 26402 A 965 965
158 Chile 26403 A 965 965
159 Chile 26404 C 965 965
160 Chile 26405 C 965 965
161 Chile 26406 T 965 965
162 Chile 26407 T 965 965
163 Chile 26408 C 965 965
164 Chile 26409 T 965 965
165 Chile 26410 T 965 965
166 Chile 26411 T 965 965
167 Chile 26412 T 965 965
168 Chile 26413 T 965 965
169 Chile 26414 A 965 965
170 Chile 26415 C 965 965
171 Chile 26416 G T 965 963 Val58Phe
172 Chile 26417 T 965 965
173 Chile 26418 T 965 965
174 Chile 26419 T 965 965
175 Chile 26420 A 965 965
176 Chile 26421 C 965 965
177 Chile 26422 T 965 965
178 Chile 26423 C 965 965
179 Chile 26424 T 965 965
180 Chile 26425 C 965 965
181 Chile 26426 G 965 965
182 Chile 26427 T 965 965
183 Chile 26428 G T 965 963 Val62Phe
184 Chile 26429 T 965 965
185 Chile 26430 T 965 965
186 Chile 26431 A 965 965
187 Chile 26432 A 965 965
188 Chile 26433 A 965 965
189 Chile 26434 A 965 965
190 Chile 26435 A 965 965
191 Chile 26436 T 965 965
192 Chile 26437 C 965 965
193 Chile 26438 T 965 965
194 Chile 26439 G T 965 964 Leu65Leu
195 Chile 26440 A 965 965
196 Chile 26441 A 965 965
197 Chile 26442 T 965 965
198 Chile 26443 T 965 965
199 Chile 26444 C 965 965
200 Chile 26445 T 965 965
201 Chile 26446 T 965 965
202 Chile 26447 C T 965 958 Ser68Phe
203 Chile 26448 T 965 965
204 Chile 26449 A 965 965
205 Chile 26450 G 965 965
206 Chile 26451 A 965 965
207 Chile 26452 G 965 965
208 Chile 26453 T 965 965
209 Chile 26454 T 965 965
210 Chile 26455 C 965 965
211 Chile 26456 C 965 965
212 Chile 26457 T 965 965
213 Chile 26458 G 965 965
214 Chile 26459 A 965 965
215 Chile 26460 T 965 965
216 Chile 26461 C T 965 964 Leu73Phe
217 Chile 26462 T 965 965
218 Chile 26463 T 965 965
219 Chile 26464 C 965 965
220 Chile 26465 T 965 965
221 Chile 26466 G 965 965
222 Chile 26467 G 965 965
223 Chile 26468 T 965 965
224 Chile 26469 C 965 965
225 Chile 26470 T 965 965
226 Chile 26471 A 965 965
227 Chile 26472 A 965 965