National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G I K L M N P R S T V Y
*     2                                  
-     228                                  
?                                        
A     12 1                           1 2  
C     9                                  
D     3                                  
E     6     1                            
F     15         2   1                    
G     3                                  
I     9                             1    
K     6               1                  
L     43         3   1   4         1      
M     3                                  
N     15                     1            
P     6                 1         1      
R     9             1                    
S     24         2       1     1   1      
T     12             2                    
V     39 1       3   1   1             2  
Y     12                                  

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Canada 26245 A 8547 8547
1 Canada 26246 T 8547 8547
2 Canada 26247 G 8547 8547
3 Canada 26248 T 8547 8547
4 Canada 26249 A 8547 8547
5 Canada 26250 C 8547 8547
6 Canada 26251 T C 8547 8546 Ser3Pro
7 Canada 26252 C 8547 8547
8 Canada 26253 A T 8547 8544 Ser3Ser
9 Canada 26254 T 8547 8547
10 Canada 26255 T 8547 8547
11 Canada 26256 C 8547 8546
12 Canada 26257 G A 8547 8542 Val5Ile
13 Canada 26258 T 8547 8547
14 Canada 26259 T 8547 8547
15 Canada 26260 T 8547 8547
16 Canada 26261 C T 8547 8546 Ser6Leu
17 Canada 26262 G 8547 8547
18 Canada 26263 G 8547 8547
19 Canada 26264 A 8547 8547
20 Canada 26265 A 8547 8547
21 Canada 26266 G 8547 8547
22 Canada 26267 A 8547 8547
23 Canada 26268 G T 8547 8546 Glu8Asp
24 Canada 26269 A 8547 8547
25 Canada 26270 C T 8547 8536 Thr9Ile
26 Canada 26271 A 8547 8547
27 Canada 26272 G 8547 8547
28 Canada 26273 G 8547 8547
29 Canada 26274 T 8547 8547
30 Canada 26275 A 8547 8547
31 Canada 26276 C 8547 8547
32 Canada 26277 G 8547 8547
33 Canada 26278 T 8547 8547
34 Canada 26279 T 8547 8547
35 Canada 26280 A 8547 8547
36 Canada 26281 A 8547 8547
37 Canada 26282 T 8547 8547
38 Canada 26283 A 8547 8547
39 Canada 26284 G 8547 8547
40 Canada 26285 T 8547 8547
41 Canada 26286 T 8547 8547
42 Canada 26287 A 8547 8547
43 Canada 26288 A 8547 8547
44 Canada 26289 T C 8547 8546 Asn15Asn
45 Canada 26290 A 8547 8547
46 Canada 26291 G 8547 8547
47 Canada 26292 C 8547 8547
48 Canada 26293 G 8547 8547
49 Canada 26294 T 8547 8547
50 Canada 26295 A 8547 8547
51 Canada 26296 C 8547 8547
52 Canada 26297 T 8547 8547
53 Canada 26298 T 8547 8547
54 Canada 26299 C 8547 8547
55 Canada 26300 T 8547 8547
56 Canada 26301 T A 8547 8534 Leu19Leu
57 Canada 26302 T A 8547 8534 Phe20Ile
58 Canada 26303 T 8547 8547
59 Canada 26304 T 8547 8547
60 Canada 26305 C T 8547 8536 Leu21Phe
61 Canada 26306 T 8547 8547
62 Canada 26307 T 8547 8547
63 Canada 26308 G 8547 8547
64 Canada 26309 C 8547 8547
65 Canada 26310 T 8547 8547
66 Canada 26311 T 8547 8547
67 Canada 26312 T 8547 8547
68 Canada 26313 C T 8547 8516 Phe23Phe
69 Canada 26314 G 8547 8547
70 Canada 26315 T 8547 8547
71 Canada 26316 G 8547 8547
72 Canada 26317 G 8547 8547
73 Canada 26318 T C 8547 8546 Val25Ala
74 Canada 26319 A 8547 8547
75 Canada 26320 T 8547 8547
76 Canada 26321 T 8547 8547
77 Canada 26322 C T 8547 8544 Phe26Phe
78 Canada 26323 T 8547 8547
79 Canada 26324 T C 8547 8546 Leu27Ser
80 Canada 26325 G 8547 8547
81 Canada 26326 C 8547 8547
82 Canada 26327 T 8547 8547
83 Canada 26328 A 8547 8547
84 Canada 26329 G 8547 8547
85 Canada 26330 T 8547 8547
86 Canada 26331 T 8547 8547
87 Canada 26332 A 8547 8547
88 Canada 26333 C T 8547 8544 Thr30Ile
89 Canada 26334 A 8547 8547
90 Canada 26335 C 8547 8547
91 Canada 26336 T 8547 8547
92 Canada 26337 A 8547 8547
93 Canada 26338 G 8547 8547
94 Canada 26339 C 8547 8547
95 Canada 26340 C 8547 8547
96 Canada 26341 A 8547 8547
97 Canada 26342 T C 8547 8546 Ile33Thr
98 Canada 26343 C 8547 8547
99 Canada 26344 C 8547 8547
100 Canada 26345 T 8547 8547
101 Canada 26346 T 8547 8547
102 Canada 26347 A 8547 8547
103 Canada 26348 C 8547 8547
104 Canada 26349 T 8547 8547
105 Canada 26350 G 8547 8546
106 Canada 26351 C T 8547 8545 Ala36Val
107 Canada 26352 G T 8547 8545 Ala36Ala
108 Canada 26353 C T 8547 8546 Leu37Phe
109 Canada 26354 T 8547 8546
110 Canada 26355 T 8547 8547
111 Canada 26356 C 8547 8547
112 Canada 26357 G 8547 8546
113 Canada 26358 A 8547 8547
114 Canada 26359 T 8547 8547
115 Canada 26360 T 8547 8546
116 Canada 26361 G 8547 8546
117 Canada 26362 T 8547 8546
118 Canada 26363 G 8547 8546
119 Canada 26364 T 8547 8546
120 Canada 26365 G A 8547 8546 Ala41Thr
121 Canada 26366 C T 8547 8542 Ala41Val
122 Canada 26367 G 8547 8546
123 Canada 26368 T 8547 8546
124 Canada 26369 A 8547 8546
125 Canada 26370 C 8547 8546
126 Canada 26371 T 8547 8547
127 Canada 26372 G 8547 8546
128 Canada 26373 C 8547 8547
129 Canada 26374 T 8547 8547
130 Canada 26375 G 8547 8547
131 Canada 26376 C 8547 8547
132 Canada 26377 A 8547 8547
133 Canada 26378 A 8547 8547
134 Canada 26379 T 8547 8547
135 Canada 26380 A 8547 8547
136 Canada 26381 T 8547 8547
137 Canada 26382 T 8547 8547
138 Canada 26383 G 8547 8547
139 Canada 26384 T 8547 8547
140 Canada 26385 T A 8547 8533 Val47Val
141 Canada 26386 A 8547 8547
142 Canada 26387 A 8547 8547
143 Canada 26388 C 8547 8547
144 Canada 26389 G T 8547 8546 Val49Leu
145 Canada 26390 T 8547 8547
146 Canada 26391 G 8547 8547
147 Canada 26392 A 8547 8547
148 Canada 26393 G 8547 8547
149 Canada 26394 T 8547 8547
150 Canada 26395 C A 8547 8542 Leu51Ile
151 Canada 26396 T 8547 8547
152 Canada 26397 T 8547 8547
153 Canada 26398 G 8547 8547
154 Canada 26399 T 8547 8547
155 Canada 26400 A 8547 8547
156 Canada 26401 A 8547 8547
157 Canada 26402 A 8547 8547
158 Canada 26403 A 8547 8547
159 Canada 26404 C 8547 8547
160 Canada 26405 C 8547 8547
161 Canada 26406 T 8547 8547
162 Canada 26407 T 8547 8547
163 Canada 26408 C T 8547 8546 Ser55Phe
164 Canada 26409 T 8547 8547
165 Canada 26410 T 8547 8547
166 Canada 26411 T 8547 8547
167 Canada 26412 T 8547 8547
168 Canada 26413 T 8547 8547
169 Canada 26414 A 8547 8547
170 Canada 26415 C 8547 8547
171 Canada 26416 G T 8547 8544 Val58Phe
172 Canada 26417 T 8547 8547
173 Canada 26418 T 8547 8547
174 Canada 26419 T 8547 8547
175 Canada 26420 A 8547 8547
176 Canada 26421 C 8547 8547
177 Canada 26422 T 8547 8547
178 Canada 26423 C 8546 8546
179 Canada 26424 T 8546 8546
180 Canada 26425 C 8546 8546
181 Canada 26426 G 8546 8546
182 Canada 26427 T 8546 8546
183 Canada 26428 G T 8546 8543 Val62Phe
184 Canada 26429 T 8546 8546
185 Canada 26430 T 8546 8546
186 Canada 26431 A 8546 8546
187 Canada 26432 A 8546 8546
188 Canada 26433 A G 8546 8541 Lys63Lys
189 Canada 26434 A 8546 8546
190 Canada 26435 A 8546 8546
191 Canada 26436 T 8546 8546
192 Canada 26437 C T 8546 8544 Leu65Leu
193 Canada 26438 T 8546 8546
194 Canada 26439 G T 8546 8544 Leu65Leu
195 Canada 26440 A 8546 8546
196 Canada 26441 A 8546 8546
197 Canada 26442 T 8546 8546
198 Canada 26443 T 8546 8546
199 Canada 26444 C 8546 8546
200 Canada 26445 T 8546 8546
201 Canada 26446 T 8546 8546
202 Canada 26447 C T 8546 8544 Ser68Phe
203 Canada 26448 T 8546 8546
204 Canada 26449 A 8546 8546
205 Canada 26450 G T 8546 8545 Arg69Ile
206 Canada 26451 A 8546 8546
207 Canada 26452 G T 8546 8545 Val70Phe
208 Canada 26453 T 8546 8546
209 Canada 26454 T C 8546 8543 Val70Val
210 Canada 26455 C T 8546 8542 Pro71Ser
211 Canada 26456 C T 8546 8542 Pro71Leu
212 Canada 26457 T 8546 8546
213 Canada 26458 G 8546 8546
214 Canada 26459 A 8546 8546
215 Canada 26460 T 8546 8546
216 Canada 26461 C T 8546 8540 Leu73Phe
217 Canada 26462 T 8546 8546
218 Canada 26463 T 8546 8546
219 Canada 26464 C T 8546 8543 Leu74Leu
220 Canada 26465 T 8546 8546
221 Canada 26466 G 8546 8546
222 Canada 26467 G 8546 8546
223 Canada 26468 T 8546 8546
224 Canada 26469 C 8546 8546
225 Canada 26470 T 8546 8546
226 Canada 26471 A 8546 8546
227 Canada 26472 A 8546 8546