National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G I K L M N P R S T V Y
*     2                                  
-     228                                  
?                                        
A     12                                  
C     9                                  
D     3                                  
E     6                                  
F     15                                  
G     3                                  
I     9                                  
K     6                                  
L     43                                  
M     3                                  
N     15                                  
P     6                                  
R     9                                  
S     24                                  
T     12             1                    
V     39                                  
Y     12                                  

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Cameroon 26245 A 20 20
1 Cameroon 26246 T 20 20
2 Cameroon 26247 G 20 20
3 Cameroon 26248 T 20 20
4 Cameroon 26249 A 20 20
5 Cameroon 26250 C 20 20
6 Cameroon 26251 T 20 20
7 Cameroon 26252 C 20 20
8 Cameroon 26253 A 20 20
9 Cameroon 26254 T 20 20
10 Cameroon 26255 T 20 20
11 Cameroon 26256 C 20 20
12 Cameroon 26257 G 20 20
13 Cameroon 26258 T 20 20
14 Cameroon 26259 T 20 20
15 Cameroon 26260 T 20 20
16 Cameroon 26261 C 20 20
17 Cameroon 26262 G 20 20
18 Cameroon 26263 G 20 20
19 Cameroon 26264 A 20 20
20 Cameroon 26265 A 20 20
21 Cameroon 26266 G 20 20
22 Cameroon 26267 A 20 20
23 Cameroon 26268 G 20 20
24 Cameroon 26269 A 20 20
25 Cameroon 26270 C T 20 19 Thr9Ile
26 Cameroon 26271 A 20 20
27 Cameroon 26272 G 20 20
28 Cameroon 26273 G 20 20
29 Cameroon 26274 T 20 20
30 Cameroon 26275 A 20 20
31 Cameroon 26276 C 20 20
32 Cameroon 26277 G 20 20
33 Cameroon 26278 T 20 20
34 Cameroon 26279 T 20 20
35 Cameroon 26280 A 20 20
36 Cameroon 26281 A 20 20
37 Cameroon 26282 T 20 20
38 Cameroon 26283 A 20 20
39 Cameroon 26284 G 20 20
40 Cameroon 26285 T 20 20
41 Cameroon 26286 T 20 20
42 Cameroon 26287 A 20 20
43 Cameroon 26288 A 20 20
44 Cameroon 26289 T 20 20
45 Cameroon 26290 A 20 20
46 Cameroon 26291 G 20 20
47 Cameroon 26292 C 20 20
48 Cameroon 26293 G 20 20
49 Cameroon 26294 T 19 19
50 Cameroon 26295 A 19 19
51 Cameroon 26296 C 19 19
52 Cameroon 26297 T 19 19
53 Cameroon 26298 T 19 19
54 Cameroon 26299 C 19 19
55 Cameroon 26300 T 19 19
56 Cameroon 26301 T 19 19
57 Cameroon 26302 T 19 19
58 Cameroon 26303 T 19 19
59 Cameroon 26304 T 19 19
60 Cameroon 26305 C 19 19
61 Cameroon 26306 T 19 19
62 Cameroon 26307 T 19 19
63 Cameroon 26308 G 19 19
64 Cameroon 26309 C 19 19
65 Cameroon 26310 T 19 19
66 Cameroon 26311 T 19 19
67 Cameroon 26312 T 19 19
68 Cameroon 26313 C 19 19
69 Cameroon 26314 G 19 19
70 Cameroon 26315 T 19 19
71 Cameroon 26316 G 19 19
72 Cameroon 26317 G 19 19
73 Cameroon 26318 T 19 19
74 Cameroon 26319 A 19 19
75 Cameroon 26320 T 19 19
76 Cameroon 26321 T 19 19
77 Cameroon 26322 C 19 19
78 Cameroon 26323 T 19 19
79 Cameroon 26324 T 19 19
80 Cameroon 26325 G 19 19
81 Cameroon 26326 C 19 19
82 Cameroon 26327 T 19 19
83 Cameroon 26328 A 19 19
84 Cameroon 26329 G 19 19
85 Cameroon 26330 T 19 19
86 Cameroon 26331 T 19 19
87 Cameroon 26332 A 19 19
88 Cameroon 26333 C 19 19
89 Cameroon 26334 A 19 19
90 Cameroon 26335 C 19 19
91 Cameroon 26336 T 19 19
92 Cameroon 26337 A 19 19
93 Cameroon 26338 G 19 19
94 Cameroon 26339 C 19 19
95 Cameroon 26340 C 19 19
96 Cameroon 26341 A 19 19
97 Cameroon 26342 T 19 19
98 Cameroon 26343 C 19 19
99 Cameroon 26344 C 19 19
100 Cameroon 26345 T 19 19
101 Cameroon 26346 T 19 19
102 Cameroon 26347 A 19 19
103 Cameroon 26348 C 19 19
104 Cameroon 26349 T 19 19
105 Cameroon 26350 G 19 19
106 Cameroon 26351 C 19 19
107 Cameroon 26352 G 19 19
108 Cameroon 26353 C 19 19
109 Cameroon 26354 T 19 19
110 Cameroon 26355 T 19 19
111 Cameroon 26356 C 19 19
112 Cameroon 26357 G 19 19
113 Cameroon 26358 A 19 19
114 Cameroon 26359 T 19 19
115 Cameroon 26360 T 19 19
116 Cameroon 26361 G 19 19
117 Cameroon 26362 T 19 19
118 Cameroon 26363 G 19 19
119 Cameroon 26364 T 19 19
120 Cameroon 26365 G 19 19
121 Cameroon 26366 C 19 19
122 Cameroon 26367 G 19 19
123 Cameroon 26368 T 19 19
124 Cameroon 26369 A 19 19
125 Cameroon 26370 C 19 19
126 Cameroon 26371 T 19 19
127 Cameroon 26372 G 19 19
128 Cameroon 26373 C 19 19
129 Cameroon 26374 T 19 19
130 Cameroon 26375 G 19 19
131 Cameroon 26376 C 19 19
132 Cameroon 26377 A 19 19
133 Cameroon 26378 A 19 19
134 Cameroon 26379 T 19 19
135 Cameroon 26380 A 19 19
136 Cameroon 26381 T 19 19
137 Cameroon 26382 T 19 19
138 Cameroon 26383 G 19 19
139 Cameroon 26384 T 19 19
140 Cameroon 26385 T 19 19
141 Cameroon 26386 A 19 19
142 Cameroon 26387 A 19 19
143 Cameroon 26388 C 19 19
144 Cameroon 26389 G 19 19
145 Cameroon 26390 T 19 19
146 Cameroon 26391 G 19 19
147 Cameroon 26392 A 19 19
148 Cameroon 26393 G 19 19
149 Cameroon 26394 T 19 19
150 Cameroon 26395 C 19 19
151 Cameroon 26396 T 19 19
152 Cameroon 26397 T 19 19
153 Cameroon 26398 G 19 19
154 Cameroon 26399 T 19 19
155 Cameroon 26400 A 19 19
156 Cameroon 26401 A 19 19
157 Cameroon 26402 A 19 19
158 Cameroon 26403 A 19 19
159 Cameroon 26404 C 19 19
160 Cameroon 26405 C 19 19
161 Cameroon 26406 T 19 19
162 Cameroon 26407 T 18 18
163 Cameroon 26408 C 18 18
164 Cameroon 26409 T 18 18
165 Cameroon 26410 T 18 18
166 Cameroon 26411 T 18 18
167 Cameroon 26412 T 18 18
168 Cameroon 26413 T 18 18
169 Cameroon 26414 A 18 18
170 Cameroon 26415 C 19 19
171 Cameroon 26416 G 19 19
172 Cameroon 26417 T 19 19
173 Cameroon 26418 T 19 19
174 Cameroon 26419 T 19 19
175 Cameroon 26420 A 19 19
176 Cameroon 26421 C 19 19
177 Cameroon 26422 T 19 19
178 Cameroon 26423 C 19 19
179 Cameroon 26424 T 19 19
180 Cameroon 26425 C 19 19
181 Cameroon 26426 G 19 19
182 Cameroon 26427 T 19 19
183 Cameroon 26428 G 19 19
184 Cameroon 26429 T 19 19
185 Cameroon 26430 T 19 19
186 Cameroon 26431 A 19 19
187 Cameroon 26432 A 19 19
188 Cameroon 26433 A 19 19
189 Cameroon 26434 A 19 19
190 Cameroon 26435 A 19 19
191 Cameroon 26436 T 19 19
192 Cameroon 26437 C 19 19
193 Cameroon 26438 T 19 19
194 Cameroon 26439 G 19 19
195 Cameroon 26440 A 19 19
196 Cameroon 26441 A 19 19
197 Cameroon 26442 T 19 19
198 Cameroon 26443 T 19 19
199 Cameroon 26444 C 19 19
200 Cameroon 26445 T 19 19
201 Cameroon 26446 T 19 19
202 Cameroon 26447 C 19 19
203 Cameroon 26448 T 19 19
204 Cameroon 26449 A 19 19
205 Cameroon 26450 G 19 19
206 Cameroon 26451 A 19 19
207 Cameroon 26452 G 19 19
208 Cameroon 26453 T 19 19
209 Cameroon 26454 T 19 19
210 Cameroon 26455 C 19 19
211 Cameroon 26456 C 19 19
212 Cameroon 26457 T 19 19
213 Cameroon 26458 G 19 19
214 Cameroon 26459 A 19 19
215 Cameroon 26460 T 19 19
216 Cameroon 26461 C 19 19
217 Cameroon 26462 T 19 19
218 Cameroon 26463 T 19 19
219 Cameroon 26464 C 19 19
220 Cameroon 26465 T 19 19
221 Cameroon 26466 G 19 19
222 Cameroon 26467 G 19 19
223 Cameroon 26468 T 19 19
224 Cameroon 26469 C 19 19
225 Cameroon 26470 T 19 19
226 Cameroon 26471 A 19 19
227 Cameroon 26472 A 19 19