National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G I K L M N P R S T V Y
*     2                                  
-     228                                  
?                                        
A     12                                  
C     9                                  
D     3           1                      
E     6                                  
F     15                                  
G     3                                  
I     9                                  
K     6                                  
L     43                                  
M     3                                  
N     15                                  
P     6                                  
R     9                                  
S     24                                  
T     12                                  
V     39 1                             1  
Y     12                                  

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Cambodia 26245 A 4 4
1 Cambodia 26246 T 4 4
2 Cambodia 26247 G 4 4
3 Cambodia 26248 T 4 4
4 Cambodia 26249 A 4 4
5 Cambodia 26250 C 4 4
6 Cambodia 26251 T 4 4
7 Cambodia 26252 C 4 4
8 Cambodia 26253 A 4 4
9 Cambodia 26254 T 4 4
10 Cambodia 26255 T 4 4
11 Cambodia 26256 C 4 4
12 Cambodia 26257 G 4 4
13 Cambodia 26258 T C 4 3 Val5Ala
14 Cambodia 26259 T 4 4
15 Cambodia 26260 T 4 4
16 Cambodia 26261 C 4 4
17 Cambodia 26262 G 4 4
18 Cambodia 26263 G 4 4
19 Cambodia 26264 A 4 4
20 Cambodia 26265 A 4 4
21 Cambodia 26266 G 4 4
22 Cambodia 26267 A 4 4
23 Cambodia 26268 G 4 4
24 Cambodia 26269 A 4 4
25 Cambodia 26270 C 4 4
26 Cambodia 26271 A 4 4
27 Cambodia 26272 G 4 4
28 Cambodia 26273 G 4 4
29 Cambodia 26274 T 4 4
30 Cambodia 26275 A 4 4
31 Cambodia 26276 C 4 4
32 Cambodia 26277 G 4 4
33 Cambodia 26278 T 4 4
34 Cambodia 26279 T 4 4
35 Cambodia 26280 A 4 4
36 Cambodia 26281 A 4 4
37 Cambodia 26282 T 4 4
38 Cambodia 26283 A 4 4
39 Cambodia 26284 G 4 4
40 Cambodia 26285 T 4 4
41 Cambodia 26286 T 4 4
42 Cambodia 26287 A 4 4
43 Cambodia 26288 A 4 4
44 Cambodia 26289 T 4 4
45 Cambodia 26290 A 4 4
46 Cambodia 26291 G 4 4
47 Cambodia 26292 C 4 4
48 Cambodia 26293 G 4 4
49 Cambodia 26294 T 4 4
50 Cambodia 26295 A 4 4
51 Cambodia 26296 C 4 4
52 Cambodia 26297 T 4 4
53 Cambodia 26298 T 4 4
54 Cambodia 26299 C 4 4
55 Cambodia 26300 T 4 4
56 Cambodia 26301 T 4 4
57 Cambodia 26302 T 4 4
58 Cambodia 26303 T 4 4
59 Cambodia 26304 T 4 4
60 Cambodia 26305 C 4 4
61 Cambodia 26306 T 4 4
62 Cambodia 26307 T 4 4
63 Cambodia 26308 G 4 4
64 Cambodia 26309 C 4 4
65 Cambodia 26310 T 4 4
66 Cambodia 26311 T 4 4
67 Cambodia 26312 T 4 4
68 Cambodia 26313 C 4 4
69 Cambodia 26314 G 4 4
70 Cambodia 26315 T 4 4
71 Cambodia 26316 G 4 4
72 Cambodia 26317 G 4 4
73 Cambodia 26318 T 4 4
74 Cambodia 26319 A 4 4
75 Cambodia 26320 T 4 4
76 Cambodia 26321 T 4 4
77 Cambodia 26322 C 4 4
78 Cambodia 26323 T 4 4
79 Cambodia 26324 T 4 4
80 Cambodia 26325 G 4 4
81 Cambodia 26326 C 4 4
82 Cambodia 26327 T 4 4
83 Cambodia 26328 A 4 4
84 Cambodia 26329 G 4 4
85 Cambodia 26330 T 4 4
86 Cambodia 26331 T C 4 2 Val29Val
87 Cambodia 26332 A 4 4
88 Cambodia 26333 C 4 4
89 Cambodia 26334 A 4 4
90 Cambodia 26335 C 4 4
91 Cambodia 26336 T 4 4
92 Cambodia 26337 A 4 4
93 Cambodia 26338 G 4 4
94 Cambodia 26339 C 4 4
95 Cambodia 26340 C 4 4
96 Cambodia 26341 A 4 4
97 Cambodia 26342 T 4 4
98 Cambodia 26343 C 4 4
99 Cambodia 26344 C 4 4
100 Cambodia 26345 T 4 4
101 Cambodia 26346 T 4 4
102 Cambodia 26347 A 4 4
103 Cambodia 26348 C 4 4
104 Cambodia 26349 T 4 4
105 Cambodia 26350 G 4 4
106 Cambodia 26351 C 4 4
107 Cambodia 26352 G 4 4
108 Cambodia 26353 C 4 4
109 Cambodia 26354 T 4 4
110 Cambodia 26355 T 4 4
111 Cambodia 26356 C 4 4
112 Cambodia 26357 G 4 4
113 Cambodia 26358 A 4 4
114 Cambodia 26359 T 4 4
115 Cambodia 26360 T 4 4
116 Cambodia 26361 G 4 4
117 Cambodia 26362 T 4 4
118 Cambodia 26363 G 4 4
119 Cambodia 26364 T 4 4
120 Cambodia 26365 G 4 4
121 Cambodia 26366 C 4 4
122 Cambodia 26367 G 4 4
123 Cambodia 26368 T 4 4
124 Cambodia 26369 A 4 4
125 Cambodia 26370 C 4 4
126 Cambodia 26371 T 4 4
127 Cambodia 26372 G 4 4
128 Cambodia 26373 C 4 4
129 Cambodia 26374 T 4 4
130 Cambodia 26375 G 4 4
131 Cambodia 26376 C 4 4
132 Cambodia 26377 A 4 4
133 Cambodia 26378 A 4 4
134 Cambodia 26379 T 4 4
135 Cambodia 26380 A 4 4
136 Cambodia 26381 T 4 4
137 Cambodia 26382 T 4 4
138 Cambodia 26383 G 4 4
139 Cambodia 26384 T 4 4
140 Cambodia 26385 T 4 4
141 Cambodia 26386 A 4 4
142 Cambodia 26387 A 4 4
143 Cambodia 26388 C 4 4
144 Cambodia 26389 G 4 4
145 Cambodia 26390 T 4 4
146 Cambodia 26391 G 4 4
147 Cambodia 26392 A 4 4
148 Cambodia 26393 G 4 4
149 Cambodia 26394 T 4 4
150 Cambodia 26395 C 4 4
151 Cambodia 26396 T 4 4
152 Cambodia 26397 T 4 4
153 Cambodia 26398 G 4 4
154 Cambodia 26399 T 4 4
155 Cambodia 26400 A 4 4
156 Cambodia 26401 A 4 4
157 Cambodia 26402 A 4 4
158 Cambodia 26403 A 4 4
159 Cambodia 26404 C 4 4
160 Cambodia 26405 C 4 4
161 Cambodia 26406 T 4 4
162 Cambodia 26407 T 4 4
163 Cambodia 26408 C 4 4
164 Cambodia 26409 T 4 4
165 Cambodia 26410 T 4 4
166 Cambodia 26411 T 4 4
167 Cambodia 26412 T 4 4
168 Cambodia 26413 T 4 4
169 Cambodia 26414 A 4 4
170 Cambodia 26415 C 4 4
171 Cambodia 26416 G 4 4
172 Cambodia 26417 T 4 4
173 Cambodia 26418 T 4 4
174 Cambodia 26419 T 4 4
175 Cambodia 26420 A 4 4
176 Cambodia 26421 C 4 4
177 Cambodia 26422 T 4 4
178 Cambodia 26423 C 4 4
179 Cambodia 26424 T 4 4
180 Cambodia 26425 C 4 4
181 Cambodia 26426 G 4 4
182 Cambodia 26427 T 4 4
183 Cambodia 26428 G 4 4
184 Cambodia 26429 T 4 4
185 Cambodia 26430 T 4 4
186 Cambodia 26431 A 4 4
187 Cambodia 26432 A 4 4
188 Cambodia 26433 A 4 4
189 Cambodia 26434 A 4 4
190 Cambodia 26435 A 4 4
191 Cambodia 26436 T 4 4
192 Cambodia 26437 C 4 4
193 Cambodia 26438 T 4 4
194 Cambodia 26439 G 4 4
195 Cambodia 26440 A 4 4
196 Cambodia 26441 A 4 4
197 Cambodia 26442 T 4 4
198 Cambodia 26443 T 4 4
199 Cambodia 26444 C 4 4
200 Cambodia 26445 T 4 4
201 Cambodia 26446 T 4 4
202 Cambodia 26447 C 4 4
203 Cambodia 26448 T 4 4
204 Cambodia 26449 A 4 4
205 Cambodia 26450 G 4 4
206 Cambodia 26451 A 4 4
207 Cambodia 26452 G 4 4
208 Cambodia 26453 T 4 4
209 Cambodia 26454 T 4 4
210 Cambodia 26455 C 4 4
211 Cambodia 26456 C 4 4
212 Cambodia 26457 T 4 4
213 Cambodia 26458 G 4 4
214 Cambodia 26459 A G 4 2 Asp72Gly
215 Cambodia 26460 T 4 4
216 Cambodia 26461 C 4 4
217 Cambodia 26462 T 4 4
218 Cambodia 26463 T 4 4
219 Cambodia 26464 C 4 4
220 Cambodia 26465 T 4 4
221 Cambodia 26466 G 4 4
222 Cambodia 26467 G 4 4
223 Cambodia 26468 T 4 4
224 Cambodia 26469 C 4 4
225 Cambodia 26470 T 4 4
226 Cambodia 26471 A 4 4
227 Cambodia 26472 A 4 4