National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G I K L M N P R S T V Y
*     2                                  
-     228                                  
?                                        
A     12                                  
C     9                                  
D     3                                  
E     6                                  
F     15                                  
G     3                                  
I     9                                  
K     6                                  
L     43         1                        
M     3                                  
N     15                                  
P     6                                  
R     9                                  
S     24                                  
T     12                                  
V     39                                  
Y     12                                  

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Bulgaria 26245 A 15 15
1 Bulgaria 26246 T 15 15
2 Bulgaria 26247 G 15 15
3 Bulgaria 26248 T 15 15
4 Bulgaria 26249 A 15 15
5 Bulgaria 26250 C 15 15
6 Bulgaria 26251 T 15 15
7 Bulgaria 26252 C 15 15
8 Bulgaria 26253 A 15 15
9 Bulgaria 26254 T 15 15
10 Bulgaria 26255 T 15 15
11 Bulgaria 26256 C 15 15
12 Bulgaria 26257 G 15 15
13 Bulgaria 26258 T 15 15
14 Bulgaria 26259 T 15 15
15 Bulgaria 26260 T 15 15
16 Bulgaria 26261 C 15 15
17 Bulgaria 26262 G 15 15
18 Bulgaria 26263 G 15 15
19 Bulgaria 26264 A 15 15
20 Bulgaria 26265 A 15 15
21 Bulgaria 26266 G 15 15
22 Bulgaria 26267 A 15 15
23 Bulgaria 26268 G 15 15
24 Bulgaria 26269 A 15 15
25 Bulgaria 26270 C 15 15
26 Bulgaria 26271 A 15 15
27 Bulgaria 26272 G 15 15
28 Bulgaria 26273 G 15 15
29 Bulgaria 26274 T 15 15
30 Bulgaria 26275 A 15 15
31 Bulgaria 26276 C 15 15
32 Bulgaria 26277 G 15 15
33 Bulgaria 26278 T 15 15
34 Bulgaria 26279 T 15 15
35 Bulgaria 26280 A 15 15
36 Bulgaria 26281 A 15 15
37 Bulgaria 26282 T 15 15
38 Bulgaria 26283 A 15 15
39 Bulgaria 26284 G 15 15
40 Bulgaria 26285 T 15 15
41 Bulgaria 26286 T 15 15
42 Bulgaria 26287 A 15 15
43 Bulgaria 26288 A 15 15
44 Bulgaria 26289 T 15 15
45 Bulgaria 26290 A 15 15
46 Bulgaria 26291 G 15 15
47 Bulgaria 26292 C 15 15
48 Bulgaria 26293 G 15 15
49 Bulgaria 26294 T 15 15
50 Bulgaria 26295 A 15 15
51 Bulgaria 26296 C 15 15
52 Bulgaria 26297 T 15 15
53 Bulgaria 26298 T 15 15
54 Bulgaria 26299 C 15 15
55 Bulgaria 26300 T 15 15
56 Bulgaria 26301 T 15 15
57 Bulgaria 26302 T 15 15
58 Bulgaria 26303 T 15 15
59 Bulgaria 26304 T 15 15
60 Bulgaria 26305 C 15 15
61 Bulgaria 26306 T 15 15
62 Bulgaria 26307 T 15 15
63 Bulgaria 26308 G 15 15
64 Bulgaria 26309 C 15 15
65 Bulgaria 26310 T 15 15
66 Bulgaria 26311 T 15 15
67 Bulgaria 26312 T 15 15
68 Bulgaria 26313 C 15 15
69 Bulgaria 26314 G 15 15
70 Bulgaria 26315 T 15 15
71 Bulgaria 26316 G 15 15
72 Bulgaria 26317 G 15 15
73 Bulgaria 26318 T 15 15
74 Bulgaria 26319 A 15 15
75 Bulgaria 26320 T 15 15
76 Bulgaria 26321 T 15 15
77 Bulgaria 26322 C 15 15
78 Bulgaria 26323 T 15 15
79 Bulgaria 26324 T 15 15
80 Bulgaria 26325 G 15 15
81 Bulgaria 26326 C 15 15
82 Bulgaria 26327 T 15 15
83 Bulgaria 26328 A 15 15
84 Bulgaria 26329 G 15 15
85 Bulgaria 26330 T 15 15
86 Bulgaria 26331 T 15 15
87 Bulgaria 26332 A 15 15
88 Bulgaria 26333 C 15 15
89 Bulgaria 26334 A 15 15
90 Bulgaria 26335 C 15 15
91 Bulgaria 26336 T 15 15
92 Bulgaria 26337 A 15 15
93 Bulgaria 26338 G 15 15
94 Bulgaria 26339 C 15 15
95 Bulgaria 26340 C 15 15
96 Bulgaria 26341 A 15 15
97 Bulgaria 26342 T 15 15
98 Bulgaria 26343 C 15 15
99 Bulgaria 26344 C 15 15
100 Bulgaria 26345 T 15 15
101 Bulgaria 26346 T 15 15
102 Bulgaria 26347 A 15 15
103 Bulgaria 26348 C 15 15
104 Bulgaria 26349 T 15 15
105 Bulgaria 26350 G 15 15
106 Bulgaria 26351 C 15 15
107 Bulgaria 26352 G 15 15
108 Bulgaria 26353 C 15 15
109 Bulgaria 26354 T 15 15
110 Bulgaria 26355 T 15 15
111 Bulgaria 26356 C 15 15
112 Bulgaria 26357 G 15 15
113 Bulgaria 26358 A 15 15
114 Bulgaria 26359 T 15 15
115 Bulgaria 26360 T 15 15
116 Bulgaria 26361 G 15 15
117 Bulgaria 26362 T 15 15
118 Bulgaria 26363 G 15 15
119 Bulgaria 26364 T 15 15
120 Bulgaria 26365 G 15 15
121 Bulgaria 26366 C 15 15
122 Bulgaria 26367 G 15 15
123 Bulgaria 26368 T 15 15
124 Bulgaria 26369 A 15 15
125 Bulgaria 26370 C 15 15
126 Bulgaria 26371 T 15 15
127 Bulgaria 26372 G 15 15
128 Bulgaria 26373 C 15 15
129 Bulgaria 26374 T 15 15
130 Bulgaria 26375 G 15 15
131 Bulgaria 26376 C 15 15
132 Bulgaria 26377 A 15 15
133 Bulgaria 26378 A 15 15
134 Bulgaria 26379 T 15 15
135 Bulgaria 26380 A 15 15
136 Bulgaria 26381 T 15 15
137 Bulgaria 26382 T 15 15
138 Bulgaria 26383 G 15 15
139 Bulgaria 26384 T 15 15
140 Bulgaria 26385 T 15 15
141 Bulgaria 26386 A 15 15
142 Bulgaria 26387 A 15 15
143 Bulgaria 26388 C 15 15
144 Bulgaria 26389 G 15 15
145 Bulgaria 26390 T 15 15
146 Bulgaria 26391 G 15 15
147 Bulgaria 26392 A 15 15
148 Bulgaria 26393 G 15 15
149 Bulgaria 26394 T 15 15
150 Bulgaria 26395 C 15 15
151 Bulgaria 26396 T 15 15
152 Bulgaria 26397 T 15 15
153 Bulgaria 26398 G 15 15
154 Bulgaria 26399 T 15 15
155 Bulgaria 26400 A 15 15
156 Bulgaria 26401 A 15 15
157 Bulgaria 26402 A 15 15
158 Bulgaria 26403 A 15 15
159 Bulgaria 26404 C 15 15
160 Bulgaria 26405 C 15 15
161 Bulgaria 26406 T 15 15
162 Bulgaria 26407 T 15 15
163 Bulgaria 26408 C 15 15
164 Bulgaria 26409 T 15 15
165 Bulgaria 26410 T 15 15
166 Bulgaria 26411 T 15 15
167 Bulgaria 26412 T 15 15
168 Bulgaria 26413 T 15 15
169 Bulgaria 26414 A 15 15
170 Bulgaria 26415 C 15 15
171 Bulgaria 26416 G 15 15
172 Bulgaria 26417 T 15 15
173 Bulgaria 26418 T 15 15
174 Bulgaria 26419 T 15 15
175 Bulgaria 26420 A 15 15
176 Bulgaria 26421 C 15 15
177 Bulgaria 26422 T 15 15
178 Bulgaria 26423 C 15 15
179 Bulgaria 26424 T 15 15
180 Bulgaria 26425 C 15 15
181 Bulgaria 26426 G 15 15
182 Bulgaria 26427 T 15 15
183 Bulgaria 26428 G 15 15
184 Bulgaria 26429 T 15 15
185 Bulgaria 26430 T 15 15
186 Bulgaria 26431 A 15 15
187 Bulgaria 26432 A 15 15
188 Bulgaria 26433 A 15 15
189 Bulgaria 26434 A 15 15
190 Bulgaria 26435 A 15 15
191 Bulgaria 26436 T 15 15
192 Bulgaria 26437 C 15 15
193 Bulgaria 26438 T 15 15
194 Bulgaria 26439 G 15 15
195 Bulgaria 26440 A 15 15
196 Bulgaria 26441 A 15 15
197 Bulgaria 26442 T 15 15
198 Bulgaria 26443 T 15 15
199 Bulgaria 26444 C 15 15
200 Bulgaria 26445 T 15 15
201 Bulgaria 26446 T 15 15
202 Bulgaria 26447 C 15 15
203 Bulgaria 26448 T 15 15
204 Bulgaria 26449 A 15 15
205 Bulgaria 26450 G 15 15
206 Bulgaria 26451 A 15 15
207 Bulgaria 26452 G 15 15
208 Bulgaria 26453 T 15 15
209 Bulgaria 26454 T 15 15
210 Bulgaria 26455 C 15 15
211 Bulgaria 26456 C 15 15
212 Bulgaria 26457 T 15 15
213 Bulgaria 26458 G 15 15
214 Bulgaria 26459 A 15 15
215 Bulgaria 26460 T 15 15
216 Bulgaria 26461 C T 15 14 Leu73Phe
217 Bulgaria 26462 T 15 15
218 Bulgaria 26463 T 15 15
219 Bulgaria 26464 C 15 15
220 Bulgaria 26465 T 15 15
221 Bulgaria 26466 G 15 15
222 Bulgaria 26467 G 15 15
223 Bulgaria 26468 T 15 15
224 Bulgaria 26469 C 15 15
225 Bulgaria 26470 T 15 15
226 Bulgaria 26471 A 15 15
227 Bulgaria 26472 A 15 15