National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.
Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G I K L M N P R S T V Y
*     2                                  
-     228                                  
?                                        
A     12                                  
C     9                                  
D     3                                  
E     6                                  
F     15                                  
G     3                                  
I     9                                  
K     6                                  
L     43                                  
M     3                                  
N     15                                  
P     6                 1                
R     9                                  
S     24                                  
T     12                                  
V     39                                  
Y     12                                  

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Botswana 26245 A 13 13
1 Botswana 26246 T 13 13
2 Botswana 26247 G 13 13
3 Botswana 26248 T 13 13
4 Botswana 26249 A 13 13
5 Botswana 26250 C 13 13
6 Botswana 26251 T 13 13
7 Botswana 26252 C 13 13
8 Botswana 26253 A 13 13
9 Botswana 26254 T 13 13
10 Botswana 26255 T 13 13
11 Botswana 26256 C 13 13
12 Botswana 26257 G 13 13
13 Botswana 26258 T 13 13
14 Botswana 26259 T 13 13
15 Botswana 26260 T 13 13
16 Botswana 26261 C 13 13
17 Botswana 26262 G 13 13
18 Botswana 26263 G 13 13
19 Botswana 26264 A 13 13
20 Botswana 26265 A 13 13
21 Botswana 26266 G 13 13
22 Botswana 26267 A 13 13
23 Botswana 26268 G 13 13
24 Botswana 26269 A 13 13
25 Botswana 26270 C 13 13
26 Botswana 26271 A 13 13
27 Botswana 26272 G 13 13
28 Botswana 26273 G 13 13
29 Botswana 26274 T 13 13
30 Botswana 26275 A 13 13
31 Botswana 26276 C 13 13
32 Botswana 26277 G 13 13
33 Botswana 26278 T 13 13
34 Botswana 26279 T 13 13
35 Botswana 26280 A 13 13
36 Botswana 26281 A 13 13
37 Botswana 26282 T 13 13
38 Botswana 26283 A 13 13
39 Botswana 26284 G 13 13
40 Botswana 26285 T 13 13
41 Botswana 26286 T 13 13
42 Botswana 26287 A 13 13
43 Botswana 26288 A 13 13
44 Botswana 26289 T 13 13
45 Botswana 26290 A 13 13
46 Botswana 26291 G 13 13
47 Botswana 26292 C 13 13
48 Botswana 26293 G 13 13
49 Botswana 26294 T 13 13
50 Botswana 26295 A 13 13
51 Botswana 26296 C 13 13
52 Botswana 26297 T 13 13
53 Botswana 26298 T 13 13
54 Botswana 26299 C 13 13
55 Botswana 26300 T 13 13
56 Botswana 26301 T 13 13
57 Botswana 26302 T 13 13
58 Botswana 26303 T 13 13
59 Botswana 26304 T 13 13
60 Botswana 26305 C 13 13
61 Botswana 26306 T 13 13
62 Botswana 26307 T 13 13
63 Botswana 26308 G 13 13
64 Botswana 26309 C 13 13
65 Botswana 26310 T 13 13
66 Botswana 26311 T 13 13
67 Botswana 26312 T 13 13
68 Botswana 26313 C 13 13
69 Botswana 26314 G 13 13
70 Botswana 26315 T 13 13
71 Botswana 26316 G 13 13
72 Botswana 26317 G 13 13
73 Botswana 26318 T 13 13
74 Botswana 26319 A 13 13
75 Botswana 26320 T 13 13
76 Botswana 26321 T 13 13
77 Botswana 26322 C 13 13
78 Botswana 26323 T 13 13
79 Botswana 26324 T 13 13
80 Botswana 26325 G 13 13
81 Botswana 26326 C 13 13
82 Botswana 26327 T 13 13
83 Botswana 26328 A 13 13
84 Botswana 26329 G 13 13
85 Botswana 26330 T 13 13
86 Botswana 26331 T 13 13
87 Botswana 26332 A 13 13
88 Botswana 26333 C 13 13
89 Botswana 26334 A 13 13
90 Botswana 26335 C 13 13
91 Botswana 26336 T 13 13
92 Botswana 26337 A 13 13
93 Botswana 26338 G 13 13
94 Botswana 26339 C 13 13
95 Botswana 26340 C 13 13
96 Botswana 26341 A 13 13
97 Botswana 26342 T 13 13
98 Botswana 26343 C 13 13
99 Botswana 26344 C 13 13
100 Botswana 26345 T 13 13
101 Botswana 26346 T 13 13
102 Botswana 26347 A 13 13
103 Botswana 26348 C 13 13
104 Botswana 26349 T 13 13
105 Botswana 26350 G 13 13
106 Botswana 26351 C 13 13
107 Botswana 26352 G 13 13
108 Botswana 26353 C 13 13
109 Botswana 26354 T 13 13
110 Botswana 26355 T 13 13
111 Botswana 26356 C 13 13
112 Botswana 26357 G 13 13
113 Botswana 26358 A 13 13
114 Botswana 26359 T 13 13
115 Botswana 26360 T 13 13
116 Botswana 26361 G 13 13
117 Botswana 26362 T 13 13
118 Botswana 26363 G 13 13
119 Botswana 26364 T 13 13
120 Botswana 26365 G 13 13
121 Botswana 26366 C 13 13
122 Botswana 26367 G 13 13
123 Botswana 26368 T 13 13
124 Botswana 26369 A 13 13
125 Botswana 26370 C 13 13
126 Botswana 26371 T 13 13
127 Botswana 26372 G 13 13
128 Botswana 26373 C 13 13
129 Botswana 26374 T 13 13
130 Botswana 26375 G 13 13
131 Botswana 26376 C 13 13
132 Botswana 26377 A 13 13
133 Botswana 26378 A 13 13
134 Botswana 26379 T 13 13
135 Botswana 26380 A 13 13
136 Botswana 26381 T 13 13
137 Botswana 26382 T 13 13
138 Botswana 26383 G 13 13
139 Botswana 26384 T 13 13
140 Botswana 26385 T 13 13
141 Botswana 26386 A 13 13
142 Botswana 26387 A 13 13
143 Botswana 26388 C 13 13
144 Botswana 26389 G 13 13
145 Botswana 26390 T 13 13
146 Botswana 26391 G 13 13
147 Botswana 26392 A 13 13
148 Botswana 26393 G 13 13
149 Botswana 26394 T 13 13
150 Botswana 26395 C 13 13
151 Botswana 26396 T 13 13
152 Botswana 26397 T 13 13
153 Botswana 26398 G 13 13
154 Botswana 26399 T 13 13
155 Botswana 26400 A 13 13
156 Botswana 26401 A 13 13
157 Botswana 26402 A 13 13
158 Botswana 26403 A 13 13
159 Botswana 26404 C 13 13
160 Botswana 26405 C 13 13
161 Botswana 26406 T 13 13
162 Botswana 26407 T 13 13
163 Botswana 26408 C 13 13
164 Botswana 26409 T 13 13
165 Botswana 26410 T 13 13
166 Botswana 26411 T 13 13
167 Botswana 26412 T 13 13
168 Botswana 26413 T 13 13
169 Botswana 26414 A 13 13
170 Botswana 26415 C 13 13
171 Botswana 26416 G 13 13
172 Botswana 26417 T 13 13
173 Botswana 26418 T 13 13
174 Botswana 26419 T 13 13
175 Botswana 26420 A 13 13
176 Botswana 26421 C 13 13
177 Botswana 26422 T 13 13
178 Botswana 26423 C 13 13
179 Botswana 26424 T 13 13
180 Botswana 26425 C 13 13
181 Botswana 26426 G 13 13
182 Botswana 26427 T 13 13
183 Botswana 26428 G 13 13
184 Botswana 26429 T 13 13
185 Botswana 26430 T 13 13
186 Botswana 26431 A 13 13
187 Botswana 26432 A 13 13
188 Botswana 26433 A 13 13
189 Botswana 26434 A 13 13
190 Botswana 26435 A 13 13
191 Botswana 26436 T 13 13
192 Botswana 26437 C 13 13
193 Botswana 26438 T 13 13
194 Botswana 26439 G 13 13
195 Botswana 26440 A 13 13
196 Botswana 26441 A 13 13
197 Botswana 26442 T 13 13
198 Botswana 26443 T 13 13
199 Botswana 26444 C 13 13
200 Botswana 26445 T 13 13
201 Botswana 26446 T 13 13
202 Botswana 26447 C 13 13
203 Botswana 26448 T 13 13
204 Botswana 26449 A 13 13
205 Botswana 26450 G 13 13
206 Botswana 26451 A 13 13
207 Botswana 26452 G 13 13
208 Botswana 26453 T 13 13
209 Botswana 26454 T 13 13
210 Botswana 26455 C 13 13
211 Botswana 26456 C T 13 6 Pro71Leu
212 Botswana 26457 T 13 13
213 Botswana 26458 G 13 13
214 Botswana 26459 A 13 13
215 Botswana 26460 T 13 13
216 Botswana 26461 C 13 13
217 Botswana 26462 T 13 13
218 Botswana 26463 T 13 13
219 Botswana 26464 C 13 13
220 Botswana 26465 T 13 13
221 Botswana 26466 G 13 13
222 Botswana 26467 G 13 13
223 Botswana 26468 T 13 13
224 Botswana 26469 C 13 13
225 Botswana 26470 T 13 13
226 Botswana 26471 A 13 13
227 Botswana 26472 A 13 13