National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G I K L M N P R S T V Y
*     2                                  
-     228                                  
?                                        
A     12                                  
C     9                                  
D     3                                  
E     6                                  
F     15                                  
G     3                                  
I     9                                  
K     6                                  
L     43                                  
M     3                                  
N     15                                  
P     6                                  
R     9                                  
S     24                                  
T     12                                  
V     39                                  
Y     12                                  

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Bolivia 26245 A 27 27
1 Bolivia 26246 T 27 27
2 Bolivia 26247 G 27 27
3 Bolivia 26248 T 27 27
4 Bolivia 26249 A 27 27
5 Bolivia 26250 C 27 27
6 Bolivia 26251 T 27 27
7 Bolivia 26252 C 27 27
8 Bolivia 26253 A 27 27
9 Bolivia 26254 T 27 27
10 Bolivia 26255 T 27 27
11 Bolivia 26256 C 27 27
12 Bolivia 26257 G 27 27
13 Bolivia 26258 T 27 27
14 Bolivia 26259 T 27 27
15 Bolivia 26260 T 27 27
16 Bolivia 26261 C 27 27
17 Bolivia 26262 G 27 27
18 Bolivia 26263 G 27 27
19 Bolivia 26264 A 27 27
20 Bolivia 26265 A 27 27
21 Bolivia 26266 G 27 27
22 Bolivia 26267 A 27 27
23 Bolivia 26268 G 27 27
24 Bolivia 26269 A 27 27
25 Bolivia 26270 C 27 27
26 Bolivia 26271 A 27 27
27 Bolivia 26272 G 27 27
28 Bolivia 26273 G 27 27
29 Bolivia 26274 T 27 27
30 Bolivia 26275 A 27 27
31 Bolivia 26276 C 27 27
32 Bolivia 26277 G 27 27
33 Bolivia 26278 T 27 27
34 Bolivia 26279 T 27 27
35 Bolivia 26280 A 27 27
36 Bolivia 26281 A 27 27
37 Bolivia 26282 T 27 27
38 Bolivia 26283 A 27 27
39 Bolivia 26284 G 27 27
40 Bolivia 26285 T 27 27
41 Bolivia 26286 T 27 27
42 Bolivia 26287 A 27 27
43 Bolivia 26288 A 27 27
44 Bolivia 26289 T 27 27
45 Bolivia 26290 A 27 27
46 Bolivia 26291 G 27 27
47 Bolivia 26292 C 27 27
48 Bolivia 26293 G 27 27
49 Bolivia 26294 T 27 27
50 Bolivia 26295 A 27 27
51 Bolivia 26296 C 27 27
52 Bolivia 26297 T 27 27
53 Bolivia 26298 T 27 27
54 Bolivia 26299 C 27 27
55 Bolivia 26300 T 27 27
56 Bolivia 26301 T 27 27
57 Bolivia 26302 T 27 27
58 Bolivia 26303 T 27 27
59 Bolivia 26304 T 27 27
60 Bolivia 26305 C 27 27
61 Bolivia 26306 T 27 27
62 Bolivia 26307 T 27 27
63 Bolivia 26308 G 27 27
64 Bolivia 26309 C 27 27
65 Bolivia 26310 T 27 27
66 Bolivia 26311 T 27 27
67 Bolivia 26312 T 27 27
68 Bolivia 26313 C 27 27
69 Bolivia 26314 G 27 27
70 Bolivia 26315 T 27 27
71 Bolivia 26316 G 27 27
72 Bolivia 26317 G 27 27
73 Bolivia 26318 T 27 27
74 Bolivia 26319 A 27 27
75 Bolivia 26320 T 27 27
76 Bolivia 26321 T 27 27
77 Bolivia 26322 C 27 27
78 Bolivia 26323 T 27 27
79 Bolivia 26324 T 27 27
80 Bolivia 26325 G 27 27
81 Bolivia 26326 C 27 27
82 Bolivia 26327 T 27 27
83 Bolivia 26328 A 27 27
84 Bolivia 26329 G 27 27
85 Bolivia 26330 T 27 27
86 Bolivia 26331 T 27 27
87 Bolivia 26332 A 27 27
88 Bolivia 26333 C 27 27
89 Bolivia 26334 A 27 27
90 Bolivia 26335 C 27 27
91 Bolivia 26336 T 27 27
92 Bolivia 26337 A 27 27
93 Bolivia 26338 G 27 27
94 Bolivia 26339 C 27 27
95 Bolivia 26340 C 27 27
96 Bolivia 26341 A 27 27
97 Bolivia 26342 T 27 27
98 Bolivia 26343 C 27 27
99 Bolivia 26344 C 27 27
100 Bolivia 26345 T 27 27
101 Bolivia 26346 T 27 27
102 Bolivia 26347 A 27 27
103 Bolivia 26348 C 27 27
104 Bolivia 26349 T 27 27
105 Bolivia 26350 G 27 27
106 Bolivia 26351 C 27 27
107 Bolivia 26352 G 27 27
108 Bolivia 26353 C 27 27
109 Bolivia 26354 T 27 27
110 Bolivia 26355 T 27 27
111 Bolivia 26356 C 27 27
112 Bolivia 26357 G 27 27
113 Bolivia 26358 A 27 27
114 Bolivia 26359 T 27 27
115 Bolivia 26360 T 27 27
116 Bolivia 26361 G 27 27
117 Bolivia 26362 T 27 27
118 Bolivia 26363 G 27 27
119 Bolivia 26364 T 27 27
120 Bolivia 26365 G 27 27
121 Bolivia 26366 C 27 27
122 Bolivia 26367 G 27 27
123 Bolivia 26368 T 27 27
124 Bolivia 26369 A 27 27
125 Bolivia 26370 C 27 27
126 Bolivia 26371 T 27 27
127 Bolivia 26372 G 27 27
128 Bolivia 26373 C 27 27
129 Bolivia 26374 T 27 27
130 Bolivia 26375 G 27 27
131 Bolivia 26376 C 27 27
132 Bolivia 26377 A 27 27
133 Bolivia 26378 A 27 27
134 Bolivia 26379 T 27 27
135 Bolivia 26380 A 27 27
136 Bolivia 26381 T 27 27
137 Bolivia 26382 T 27 27
138 Bolivia 26383 G 27 27
139 Bolivia 26384 T 27 27
140 Bolivia 26385 T 27 27
141 Bolivia 26386 A 27 27
142 Bolivia 26387 A 27 27
143 Bolivia 26388 C 27 27
144 Bolivia 26389 G 27 27
145 Bolivia 26390 T 27 27
146 Bolivia 26391 G 27 27
147 Bolivia 26392 A 27 27
148 Bolivia 26393 G 27 27
149 Bolivia 26394 T 27 27
150 Bolivia 26395 C 27 27
151 Bolivia 26396 T 27 27
152 Bolivia 26397 T 27 27
153 Bolivia 26398 G 27 27
154 Bolivia 26399 T 27 27
155 Bolivia 26400 A 27 27
156 Bolivia 26401 A 27 27
157 Bolivia 26402 A 27 27
158 Bolivia 26403 A 27 27
159 Bolivia 26404 C 27 27
160 Bolivia 26405 C 27 27
161 Bolivia 26406 T 27 27
162 Bolivia 26407 T 27 27
163 Bolivia 26408 C 27 27
164 Bolivia 26409 T 27 27
165 Bolivia 26410 T 27 27
166 Bolivia 26411 T 27 27
167 Bolivia 26412 T 27 27
168 Bolivia 26413 T 27 27
169 Bolivia 26414 A 27 27
170 Bolivia 26415 C 27 27
171 Bolivia 26416 G 27 27
172 Bolivia 26417 T 27 27
173 Bolivia 26418 T 27 27
174 Bolivia 26419 T 27 27
175 Bolivia 26420 A 27 27
176 Bolivia 26421 C 27 27
177 Bolivia 26422 T 27 27
178 Bolivia 26423 C 27 27
179 Bolivia 26424 T 27 27
180 Bolivia 26425 C 27 27
181 Bolivia 26426 G 27 27
182 Bolivia 26427 T 27 27
183 Bolivia 26428 G 27 27
184 Bolivia 26429 T 27 27
185 Bolivia 26430 T 27 27
186 Bolivia 26431 A 27 27
187 Bolivia 26432 A 27 27
188 Bolivia 26433 A 27 27
189 Bolivia 26434 A 27 27
190 Bolivia 26435 A 27 27
191 Bolivia 26436 T 27 27
192 Bolivia 26437 C 27 27
193 Bolivia 26438 T 27 27
194 Bolivia 26439 G 27 27
195 Bolivia 26440 A 27 27
196 Bolivia 26441 A 27 27
197 Bolivia 26442 T 27 27
198 Bolivia 26443 T 27 27
199 Bolivia 26444 C 27 27
200 Bolivia 26445 T 27 27
201 Bolivia 26446 T 27 27
202 Bolivia 26447 C 27 27
203 Bolivia 26448 T 27 27
204 Bolivia 26449 A 27 27
205 Bolivia 26450 G 27 27
206 Bolivia 26451 A 27 27
207 Bolivia 26452 G 27 27
208 Bolivia 26453 T 27 27
209 Bolivia 26454 T 27 27
210 Bolivia 26455 C 27 27
211 Bolivia 26456 C 27 27
212 Bolivia 26457 T 27 27
213 Bolivia 26458 G 27 27
214 Bolivia 26459 A 27 27
215 Bolivia 26460 T 27 27
216 Bolivia 26461 C 27 27
217 Bolivia 26462 T 27 27
218 Bolivia 26463 T 27 27
219 Bolivia 26464 C 27 27
220 Bolivia 26465 T 27 27
221 Bolivia 26466 G 27 27
222 Bolivia 26467 G 27 27
223 Bolivia 26468 T 27 27
224 Bolivia 26469 C 27 27
225 Bolivia 26470 T 27 27
226 Bolivia 26471 A 27 27
227 Bolivia 26472 A 27 27