National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G I K L M N P R S T V Y
*     2                                  
-     228                                  
?                                        
A     12                                  
C     9                                  
D     3                                  
E     6                                  
F     15                                  
G     3                                  
I     9                                  
K     6                                  
L     43                                  
M     3                                  
N     15                                  
P     6                                  
R     9                                  
S     24                                  
T     12                                  
V     39                                  
Y     12                                  

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Benin 26245 A 12 12
1 Benin 26246 T 12 12
2 Benin 26247 G 12 12
3 Benin 26248 T 12 12
4 Benin 26249 A 12 12
5 Benin 26250 C 12 12
6 Benin 26251 T 12 12
7 Benin 26252 C 12 12
8 Benin 26253 A 12 12
9 Benin 26254 T 12 12
10 Benin 26255 T 12 12
11 Benin 26256 C 12 12
12 Benin 26257 G 12 12
13 Benin 26258 T 12 12
14 Benin 26259 T 12 12
15 Benin 26260 T 12 12
16 Benin 26261 C 12 12
17 Benin 26262 G 12 12
18 Benin 26263 G 12 12
19 Benin 26264 A 12 12
20 Benin 26265 A 12 12
21 Benin 26266 G 12 12
22 Benin 26267 A 12 12
23 Benin 26268 G 12 12
24 Benin 26269 A 12 12
25 Benin 26270 C 12 12
26 Benin 26271 A 12 12
27 Benin 26272 G 12 12
28 Benin 26273 G 12 12
29 Benin 26274 T 12 12
30 Benin 26275 A 12 12
31 Benin 26276 C 12 12
32 Benin 26277 G 12 12
33 Benin 26278 T 12 12
34 Benin 26279 T 12 12
35 Benin 26280 A 12 12
36 Benin 26281 A 12 12
37 Benin 26282 T 12 12
38 Benin 26283 A 12 12
39 Benin 26284 G 12 12
40 Benin 26285 T 12 12
41 Benin 26286 T 12 12
42 Benin 26287 A 12 12
43 Benin 26288 A 12 12
44 Benin 26289 T 12 12
45 Benin 26290 A 12 12
46 Benin 26291 G 12 12
47 Benin 26292 C 12 12
48 Benin 26293 G 12 12
49 Benin 26294 T 12 12
50 Benin 26295 A 12 12
51 Benin 26296 C 12 12
52 Benin 26297 T 12 12
53 Benin 26298 T 12 12
54 Benin 26299 C 12 12
55 Benin 26300 T 12 12
56 Benin 26301 T 12 12
57 Benin 26302 T 12 12
58 Benin 26303 T 12 12
59 Benin 26304 T 12 12
60 Benin 26305 C 12 12
61 Benin 26306 T 12 12
62 Benin 26307 T 12 12
63 Benin 26308 G 12 12
64 Benin 26309 C 12 12
65 Benin 26310 T 12 12
66 Benin 26311 T 12 12
67 Benin 26312 T 12 12
68 Benin 26313 C 12 12
69 Benin 26314 G 12 12
70 Benin 26315 T 12 12
71 Benin 26316 G 12 12
72 Benin 26317 G 12 12
73 Benin 26318 T 12 12
74 Benin 26319 A 12 12
75 Benin 26320 T 12 12
76 Benin 26321 T 12 12
77 Benin 26322 C 12 12
78 Benin 26323 T 12 12
79 Benin 26324 T 12 12
80 Benin 26325 G 12 12
81 Benin 26326 C 12 12
82 Benin 26327 T 12 12
83 Benin 26328 A 12 12
84 Benin 26329 G 12 12
85 Benin 26330 T 12 12
86 Benin 26331 T 12 12
87 Benin 26332 A 12 12
88 Benin 26333 C 12 12
89 Benin 26334 A 12 12
90 Benin 26335 C 12 12
91 Benin 26336 T 12 12
92 Benin 26337 A 12 12
93 Benin 26338 G 12 12
94 Benin 26339 C 12 12
95 Benin 26340 C 12 12
96 Benin 26341 A 12 12
97 Benin 26342 T 12 12
98 Benin 26343 C 12 12
99 Benin 26344 C 12 12
100 Benin 26345 T 12 12
101 Benin 26346 T 12 12
102 Benin 26347 A 12 12
103 Benin 26348 C 12 12
104 Benin 26349 T 12 12
105 Benin 26350 G 12 12
106 Benin 26351 C 12 12
107 Benin 26352 G 12 12
108 Benin 26353 C 12 12
109 Benin 26354 T 12 12
110 Benin 26355 T 12 12
111 Benin 26356 C 12 12
112 Benin 26357 G 12 12
113 Benin 26358 A 12 12
114 Benin 26359 T 12 12
115 Benin 26360 T 12 12
116 Benin 26361 G 12 12
117 Benin 26362 T 12 12
118 Benin 26363 G 12 12
119 Benin 26364 T 12 12
120 Benin 26365 G 12 12
121 Benin 26366 C 12 12
122 Benin 26367 G 12 12
123 Benin 26368 T 12 12
124 Benin 26369 A 12 12
125 Benin 26370 C 12 12
126 Benin 26371 T 12 12
127 Benin 26372 G 12 12
128 Benin 26373 C 12 12
129 Benin 26374 T 12 12
130 Benin 26375 G 12 12
131 Benin 26376 C 12 12
132 Benin 26377 A 12 12
133 Benin 26378 A 12 12
134 Benin 26379 T 12 12
135 Benin 26380 A 12 12
136 Benin 26381 T 12 12
137 Benin 26382 T 12 12
138 Benin 26383 G 12 12
139 Benin 26384 T 12 12
140 Benin 26385 T 12 12
141 Benin 26386 A 12 12
142 Benin 26387 A 12 12
143 Benin 26388 C 12 12
144 Benin 26389 G 12 12
145 Benin 26390 T 12 12
146 Benin 26391 G 12 12
147 Benin 26392 A 12 12
148 Benin 26393 G 12 12
149 Benin 26394 T 12 12
150 Benin 26395 C 12 12
151 Benin 26396 T 12 12
152 Benin 26397 T 12 12
153 Benin 26398 G 12 12
154 Benin 26399 T 12 12
155 Benin 26400 A 12 12
156 Benin 26401 A 12 12
157 Benin 26402 A 12 12
158 Benin 26403 A 12 12
159 Benin 26404 C 12 12
160 Benin 26405 C 12 12
161 Benin 26406 T 12 12
162 Benin 26407 T 12 12
163 Benin 26408 C 12 12
164 Benin 26409 T 12 12
165 Benin 26410 T 12 12
166 Benin 26411 T 12 12
167 Benin 26412 T 12 12
168 Benin 26413 T 12 12
169 Benin 26414 A 12 12
170 Benin 26415 C 12 12
171 Benin 26416 G 12 12
172 Benin 26417 T 12 12
173 Benin 26418 T 12 12
174 Benin 26419 T 12 12
175 Benin 26420 A 12 12
176 Benin 26421 C 12 12
177 Benin 26422 T 12 12
178 Benin 26423 C 12 12
179 Benin 26424 T 12 12
180 Benin 26425 C 12 12
181 Benin 26426 G 12 12
182 Benin 26427 T 12 12
183 Benin 26428 G 12 12
184 Benin 26429 T 12 12
185 Benin 26430 T 12 12
186 Benin 26431 A 12 12
187 Benin 26432 A 12 12
188 Benin 26433 A 12 12
189 Benin 26434 A 12 12
190 Benin 26435 A 12 12
191 Benin 26436 T 12 12
192 Benin 26437 C 12 12
193 Benin 26438 T 12 12
194 Benin 26439 G 12 12
195 Benin 26440 A 12 12
196 Benin 26441 A 12 12
197 Benin 26442 T 12 12
198 Benin 26443 T 12 12
199 Benin 26444 C 12 12
200 Benin 26445 T 12 12
201 Benin 26446 T 12 12
202 Benin 26447 C 12 12
203 Benin 26448 T 12 12
204 Benin 26449 A 12 12
205 Benin 26450 G 12 12
206 Benin 26451 A 12 12
207 Benin 26452 G 12 12
208 Benin 26453 T 12 12
209 Benin 26454 T 12 12
210 Benin 26455 C 12 12
211 Benin 26456 C 12 12
212 Benin 26457 T 12 12
213 Benin 26458 G 12 12
214 Benin 26459 A 12 12
215 Benin 26460 T 12 12
216 Benin 26461 C 12 12
217 Benin 26462 T 12 12
218 Benin 26463 T 12 12
219 Benin 26464 C 12 12
220 Benin 26465 T 12 12
221 Benin 26466 G 12 12
222 Benin 26467 G 12 12
223 Benin 26468 T 12 12
224 Benin 26469 C 12 12
225 Benin 26470 T 12 12
226 Benin 26471 A 12 12
227 Benin 26472 A 12 12