National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G I K L M N P R S T V Y
*     2                                  
-     228                                  
?                                        
A     12 1                                
C     9                                  
D     3                                  
E     6     1                            
F     15         2                        
G     3                                  
I     9                             1    
K     6                                  
L     43         1   1   2             1  
M     3                                  
N     15                                  
P     6                 1                
R     9             1 1                  
S     24         1                 1      
T     12             2                    
V     39         2   1                 3  
Y     12                                  

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Belgium 26245 A 3557 3557
1 Belgium 26246 T 3557 3557
2 Belgium 26247 G 3557 3557
3 Belgium 26248 T 3557 3557
4 Belgium 26249 A 3557 3557
5 Belgium 26250 C 3557 3557
6 Belgium 26251 T 3557 3557
7 Belgium 26252 C 3557 3557
8 Belgium 26253 A 3557 3557
9 Belgium 26254 T 3557 3557
10 Belgium 26255 T 3557 3557
11 Belgium 26256 C T 3557 3547 Phe4Phe
12 Belgium 26257 G 3557 3557
13 Belgium 26258 T 3557 3557
14 Belgium 26259 T 3557 3557
15 Belgium 26260 T 3557 3556
16 Belgium 26261 C 3557 3557
17 Belgium 26262 G 3557 3557
18 Belgium 26263 G 3557 3557
19 Belgium 26264 A 3557 3557
20 Belgium 26265 A 3557 3557
21 Belgium 26266 G 3557 3557
22 Belgium 26267 A 3557 3557
23 Belgium 26268 G T 3557 3555 Glu8Asp
24 Belgium 26269 A 3557 3557
25 Belgium 26270 C T 3557 3556 Thr9Ile
26 Belgium 26271 A 3557 3557
27 Belgium 26272 G 3557 3557
28 Belgium 26273 G 3557 3557
29 Belgium 26274 T 3557 3557
30 Belgium 26275 A 3557 3557
31 Belgium 26276 C 3557 3557
32 Belgium 26277 G 3557 3557
33 Belgium 26278 T 3557 3557
34 Belgium 26279 T 3557 3557
35 Belgium 26280 A 3557 3557
36 Belgium 26281 A 3557 3557
37 Belgium 26282 T 3557 3557
38 Belgium 26283 A 3557 3557
39 Belgium 26284 G 3557 3557
40 Belgium 26285 T 3557 3557
41 Belgium 26286 T 3557 3557
42 Belgium 26287 A 3557 3557
43 Belgium 26288 A 3557 3557
44 Belgium 26289 T 3557 3557
45 Belgium 26290 A 3557 3557
46 Belgium 26291 G 3553 3553
47 Belgium 26292 C 3553 3553
48 Belgium 26293 G 3553 3553
49 Belgium 26294 T 3553 3553
50 Belgium 26295 A 3553 3553
51 Belgium 26296 C 3553 3553
52 Belgium 26297 T 3553 3553
53 Belgium 26298 T 3553 3553
54 Belgium 26299 C A 3553 3552 Leu19Ile
55 Belgium 26300 T 3553 3553
56 Belgium 26301 T 3553 3553
57 Belgium 26302 T 3553 3553
58 Belgium 26303 T 3553 3553
59 Belgium 26304 T 3553 3553
60 Belgium 26305 C 3553 3553
61 Belgium 26306 T 3553 3553
62 Belgium 26307 T 3553 3553
63 Belgium 26308 G 3553 3553
64 Belgium 26309 C 3553 3553
65 Belgium 26310 T 3553 3553
66 Belgium 26311 T 3553 3553
67 Belgium 26312 T 3553 3553
68 Belgium 26313 C T 3553 3527 Phe23Phe
69 Belgium 26314 G 3553 3553
70 Belgium 26315 T 3553 3553
71 Belgium 26316 G 3553 3553
72 Belgium 26317 G 3553 3553
73 Belgium 26318 T 3553 3553
74 Belgium 26319 A G 3553 3538 Val25Val
75 Belgium 26320 T 3553 3553
76 Belgium 26321 T 3553 3553
77 Belgium 26322 C 3553 3553
78 Belgium 26323 T 3553 3553
79 Belgium 26324 T 3553 3553
80 Belgium 26325 G 3553 3553
81 Belgium 26326 C 3553 3553
82 Belgium 26327 T 3553 3553
83 Belgium 26328 A 3553 3553
84 Belgium 26329 G 3553 3553
85 Belgium 26330 T 3553 3553
86 Belgium 26331 T 3553 3553
87 Belgium 26332 A 3553 3553
88 Belgium 26333 C T 3553 3548 Thr30Ile
89 Belgium 26334 A 3553 3553
90 Belgium 26335 C 3553 3552
91 Belgium 26336 T 3553 3553
92 Belgium 26337 A 3553 3553
93 Belgium 26338 G 3553 3553
94 Belgium 26339 C 3553 3552
95 Belgium 26340 C T 3553 3538 Ala32Ala
96 Belgium 26341 A 3553 3553
97 Belgium 26342 T C 3553 3552 Ile33Thr
98 Belgium 26343 C 3553 3553
99 Belgium 26344 C 3553 3553
100 Belgium 26345 T 3553 3553
101 Belgium 26346 T 3553 3553
102 Belgium 26347 A 3553 3553
103 Belgium 26348 C 3553 3553
104 Belgium 26349 T 3553 3553
105 Belgium 26350 G 3553 3553
106 Belgium 26351 C 3553 3553
107 Belgium 26352 G 3553 3553
108 Belgium 26353 C 3553 3553
109 Belgium 26354 T 3553 3553
110 Belgium 26355 T 3553 3553
111 Belgium 26356 C 3553 3553
112 Belgium 26357 G 3553 3553
113 Belgium 26358 A 3553 3553
114 Belgium 26359 T 3553 3553
115 Belgium 26360 T 3553 3553
116 Belgium 26361 G 3553 3553
117 Belgium 26362 T 3553 3553
118 Belgium 26363 G 3553 3553
119 Belgium 26364 T 3553 3553
120 Belgium 26365 G 3553 3553
121 Belgium 26366 C 3553 3553
122 Belgium 26367 G 3553 3553
123 Belgium 26368 T 3553 3553
124 Belgium 26369 A 3553 3553
125 Belgium 26370 C 3553 3553
126 Belgium 26371 T 3553 3553
127 Belgium 26372 G 3553 3553
128 Belgium 26373 C 3553 3553
129 Belgium 26374 T 3553 3553
130 Belgium 26375 G 3553 3553
131 Belgium 26376 C 3553 3553
132 Belgium 26377 A 3553 3553
133 Belgium 26378 A 3553 3553
134 Belgium 26379 T 3553 3553
135 Belgium 26380 A 3553 3553
136 Belgium 26381 T 3553 3553
137 Belgium 26382 T 3553 3553
138 Belgium 26383 G 3553 3553
139 Belgium 26384 T 3553 3553
140 Belgium 26385 T 3553 3553
141 Belgium 26386 A 3554 3554
142 Belgium 26387 A 3554 3554
143 Belgium 26388 C 3555 3555
144 Belgium 26389 G 3555 3555
145 Belgium 26390 T 3555 3555
146 Belgium 26391 G 3555 3555
147 Belgium 26392 A 3555 3555
148 Belgium 26393 G 3555 3555
149 Belgium 26394 T 3555 3555
150 Belgium 26395 C 3555 3555
151 Belgium 26396 T 3555 3555
152 Belgium 26397 T 3555 3555
153 Belgium 26398 G 3555 3555
154 Belgium 26399 T 3555 3555
155 Belgium 26400 A 3555 3555
156 Belgium 26401 A 3555 3555
157 Belgium 26402 A 3555 3555
158 Belgium 26403 A 3556 3556
159 Belgium 26404 C 3557 3557
160 Belgium 26405 C 3557 3557
161 Belgium 26406 T 3558 3558
162 Belgium 26407 T 3558 3558
163 Belgium 26408 C T 3558 3556 Ser55Phe
164 Belgium 26409 T 3558 3558
165 Belgium 26410 T 3558 3558
166 Belgium 26411 T 3558 3558
167 Belgium 26412 T 3558 3558
168 Belgium 26413 T 3558 3558
169 Belgium 26414 A 3558 3558
170 Belgium 26415 C 3558 3558
171 Belgium 26416 G T,A 3558 3554 Val58Phe-p.Val58Ile
172 Belgium 26417 T 3558 3558
173 Belgium 26418 T 3558 3558
174 Belgium 26419 T 3558 3558
175 Belgium 26420 A 3558 3558
176 Belgium 26421 C 3558 3558
177 Belgium 26422 T 3558 3558
178 Belgium 26423 C 3558 3558
179 Belgium 26424 T C 3558 3557 Ser60Ser
180 Belgium 26425 C 3558 3558
181 Belgium 26426 G 3558 3558
182 Belgium 26427 T 3558 3558
183 Belgium 26428 G T 3558 3549 Val62Phe
184 Belgium 26429 T 3558 3558
185 Belgium 26430 T 3558 3558
186 Belgium 26431 A 3558 3558
187 Belgium 26432 A 3559 3559
188 Belgium 26433 A 3559 3559
189 Belgium 26434 A 3559 3559
190 Belgium 26435 A 3559 3559
191 Belgium 26436 T 3559 3559
192 Belgium 26437 C 3559 3559
193 Belgium 26438 T 3559 3559
194 Belgium 26439 G T 3559 3558 Leu65Leu
195 Belgium 26440 A 3559 3559
196 Belgium 26441 A 3559 3558
197 Belgium 26442 T 3559 3559
198 Belgium 26443 T 3559 3559
199 Belgium 26444 C 3559 3559
200 Belgium 26445 T 3559 3559
201 Belgium 26446 T 3559 3559
202 Belgium 26447 C 3559 3559
203 Belgium 26448 T 3559 3559
204 Belgium 26449 A 3559 3559
205 Belgium 26450 G A,T 3559 3551 Arg69Lys-p.Arg69Ile
206 Belgium 26451 A 3559 3559
207 Belgium 26452 G 3559 3559
208 Belgium 26453 T 3559 3559
209 Belgium 26454 T 3559 3559
210 Belgium 26455 C 3559 3559
211 Belgium 26456 C T 3559 3549 Pro71Leu
212 Belgium 26457 T 3559 3559
213 Belgium 26458 G 3559 3559
214 Belgium 26459 A 3559 3559
215 Belgium 26460 T 3559 3559
216 Belgium 26461 C T,G 3559 3543 Leu73Phe-p.Leu73Val
217 Belgium 26462 T 3559 3559
218 Belgium 26463 T 3559 3559
219 Belgium 26464 C T 3559 3554 Leu74Leu
220 Belgium 26465 T 3559 3559
221 Belgium 26466 G 3558 3558
222 Belgium 26467 G 3558 3558
223 Belgium 26468 T 3558 3558
224 Belgium 26469 C T,A 3558 3554 Val75Val-p.Val75Val
225 Belgium 26470 T 3558 3558
226 Belgium 26471 A 3558 3558
227 Belgium 26472 A 3558 3558