National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G I K L M N P R S T V Y
*     2                                  
-     228                                  
?                                        
A     12                                  
C     9                                  
D     3                                  
E     6     1                            
F     15         1       1                
G     3                                  
I     9                                  
K     6                                  
L     43         1                        
M     3                                  
N     15                                  
P     6                 1                
R     9                                  
S     24                     1     1      
T     12                                  
V     39                               2  
Y     12                                  

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Bangladesh 26245 A 675 675
1 Bangladesh 26246 T 675 675
2 Bangladesh 26247 G 675 675
3 Bangladesh 26248 T 675 675
4 Bangladesh 26249 A 675 675
5 Bangladesh 26250 C 675 675
6 Bangladesh 26251 T 675 675
7 Bangladesh 26252 C 675 675
8 Bangladesh 26253 A 675 675
9 Bangladesh 26254 T 675 675
10 Bangladesh 26255 T 675 675
11 Bangladesh 26256 C 675 675
12 Bangladesh 26257 G 675 675
13 Bangladesh 26258 T 675 675
14 Bangladesh 26259 T G 675 674 Val5Val
15 Bangladesh 26260 T 675 674
16 Bangladesh 26261 C 675 675
17 Bangladesh 26262 G 675 675
18 Bangladesh 26263 G 675 675
19 Bangladesh 26264 A 675 675
20 Bangladesh 26265 A 675 675
21 Bangladesh 26266 G 675 675
22 Bangladesh 26267 A 675 675
23 Bangladesh 26268 G T 675 674 Glu8Asp
24 Bangladesh 26269 A 675 675
25 Bangladesh 26270 C 675 675
26 Bangladesh 26271 A 675 675
27 Bangladesh 26272 G 675 675
28 Bangladesh 26273 G 675 675
29 Bangladesh 26274 T 675 675
30 Bangladesh 26275 A 675 675
31 Bangladesh 26276 C 675 675
32 Bangladesh 26277 G 675 675
33 Bangladesh 26278 T 675 675
34 Bangladesh 26279 T 675 675
35 Bangladesh 26280 A 675 675
36 Bangladesh 26281 A 675 675
37 Bangladesh 26282 T 675 675
38 Bangladesh 26283 A 675 675
39 Bangladesh 26284 G 675 675
40 Bangladesh 26285 T 674 674
41 Bangladesh 26286 T 674 674
42 Bangladesh 26287 A 674 674
43 Bangladesh 26288 A 674 674
44 Bangladesh 26289 T 674 674
45 Bangladesh 26290 A 674 674
46 Bangladesh 26291 G A 671 670 Ser16Asn
47 Bangladesh 26292 C 671 671
48 Bangladesh 26293 G 671 671
49 Bangladesh 26294 T 671 671
50 Bangladesh 26295 A 671 671
51 Bangladesh 26296 C 671 671
52 Bangladesh 26297 T 671 671
53 Bangladesh 26298 T 671 671
54 Bangladesh 26299 C 671 671
55 Bangladesh 26300 T 671 671
56 Bangladesh 26301 T 671 671
57 Bangladesh 26302 T C 671 670 Phe20Leu
58 Bangladesh 26303 T 671 671
59 Bangladesh 26304 T 671 671
60 Bangladesh 26305 C T 671 669 Leu21Phe
61 Bangladesh 26306 T 671 671
62 Bangladesh 26307 T 671 671
63 Bangladesh 26308 G 671 671
64 Bangladesh 26309 C 671 671
65 Bangladesh 26310 T 671 671
66 Bangladesh 26311 T 671 671
67 Bangladesh 26312 T 671 671
68 Bangladesh 26313 C T 671 668 Phe23Phe
69 Bangladesh 26314 G 671 671
70 Bangladesh 26315 T 671 671
71 Bangladesh 26316 G 671 671
72 Bangladesh 26317 G 671 671
73 Bangladesh 26318 T 671 671
74 Bangladesh 26319 A G 671 670 Val25Val
75 Bangladesh 26320 T 671 671
76 Bangladesh 26321 T 671 671
77 Bangladesh 26322 C 671 671
78 Bangladesh 26323 T 671 671
79 Bangladesh 26324 T 671 671
80 Bangladesh 26325 G 671 671
81 Bangladesh 26326 C 671 671
82 Bangladesh 26327 T 671 671
83 Bangladesh 26328 A 671 671
84 Bangladesh 26329 G 671 671
85 Bangladesh 26330 T 671 671
86 Bangladesh 26331 T 671 671
87 Bangladesh 26332 A 671 671
88 Bangladesh 26333 C 671 671
89 Bangladesh 26334 A 671 671
90 Bangladesh 26335 C 671 671
91 Bangladesh 26336 T 671 671
92 Bangladesh 26337 A 671 671
93 Bangladesh 26338 G 671 670
94 Bangladesh 26339 C 671 670
95 Bangladesh 26340 C 671 670
96 Bangladesh 26341 A 671 671
97 Bangladesh 26342 T 671 671
98 Bangladesh 26343 C 671 671
99 Bangladesh 26344 C 671 671
100 Bangladesh 26345 T 671 671
101 Bangladesh 26346 T 671 671
102 Bangladesh 26347 A 671 671
103 Bangladesh 26348 C 671 671
104 Bangladesh 26349 T 671 671
105 Bangladesh 26350 G 671 671
106 Bangladesh 26351 C 671 669
107 Bangladesh 26352 G 671 669
108 Bangladesh 26353 C 671 669
109 Bangladesh 26354 T 671 669
110 Bangladesh 26355 T 671 668
111 Bangladesh 26356 C 671 669
112 Bangladesh 26357 G 671 670
113 Bangladesh 26358 A 671 670
114 Bangladesh 26359 T 671 670
115 Bangladesh 26360 T 670 669
116 Bangladesh 26361 G 670 669
117 Bangladesh 26362 T 670 669
118 Bangladesh 26363 G 670 669
119 Bangladesh 26364 T 670 668
120 Bangladesh 26365 G 670 668
121 Bangladesh 26366 C 670 668
122 Bangladesh 26367 G 670 668
123 Bangladesh 26368 T 670 668
124 Bangladesh 26369 A 670 668
125 Bangladesh 26370 C 670 668
126 Bangladesh 26371 T 670 669
127 Bangladesh 26372 G 670 669
128 Bangladesh 26373 C 670 669
129 Bangladesh 26374 T 669 668
130 Bangladesh 26375 G 669 668
131 Bangladesh 26376 C 669 668
132 Bangladesh 26377 A 669 668
133 Bangladesh 26378 A 669 668
134 Bangladesh 26379 T 669 669
135 Bangladesh 26380 A 669 669
136 Bangladesh 26381 T 668 668
137 Bangladesh 26382 T 668 668
138 Bangladesh 26383 G 668 668
139 Bangladesh 26384 T 668 668
140 Bangladesh 26385 T 668 668
141 Bangladesh 26386 A 668 668
142 Bangladesh 26387 A 667 667
143 Bangladesh 26388 C 667 667
144 Bangladesh 26389 G 667 667
145 Bangladesh 26390 T 667 667
146 Bangladesh 26391 G 667 667
147 Bangladesh 26392 A 667 667
148 Bangladesh 26393 G 667 667
149 Bangladesh 26394 T 667 667
150 Bangladesh 26395 C 666 666
151 Bangladesh 26396 T 666 666
152 Bangladesh 26397 T 666 666
153 Bangladesh 26398 G 666 666
154 Bangladesh 26399 T 666 666
155 Bangladesh 26400 A 666 665
156 Bangladesh 26401 A 666 666
157 Bangladesh 26402 A 666 665
158 Bangladesh 26403 A 666 665
159 Bangladesh 26404 C 666 665
160 Bangladesh 26405 C 666 665
161 Bangladesh 26406 T 666 665
162 Bangladesh 26407 T 666 665
163 Bangladesh 26408 C 666 665
164 Bangladesh 26409 T 666 665
165 Bangladesh 26410 T 666 665
166 Bangladesh 26411 T 666 665
167 Bangladesh 26412 T 666 665
168 Bangladesh 26413 T 666 665
169 Bangladesh 26414 A 666 665
170 Bangladesh 26415 C 666 665
171 Bangladesh 26416 G 666 664
172 Bangladesh 26417 T 666 664
173 Bangladesh 26418 T 666 664
174 Bangladesh 26419 T 666 664
175 Bangladesh 26420 A 666 665
176 Bangladesh 26421 C 666 665
177 Bangladesh 26422 T 666 665
178 Bangladesh 26423 C 666 664
179 Bangladesh 26424 T 666 664
180 Bangladesh 26425 C 666 665
181 Bangladesh 26426 G 666 665
182 Bangladesh 26427 T 666 666
183 Bangladesh 26428 G 666 666
184 Bangladesh 26429 T 666 666
185 Bangladesh 26430 T 666 666
186 Bangladesh 26431 A 666 665
187 Bangladesh 26432 A 666 666
188 Bangladesh 26433 A 666 665
189 Bangladesh 26434 A 666 666
190 Bangladesh 26435 A 666 666
191 Bangladesh 26436 T 666 666
192 Bangladesh 26437 C 666 666
193 Bangladesh 26438 T 666 666
194 Bangladesh 26439 G 666 666
195 Bangladesh 26440 A 666 665
196 Bangladesh 26441 A 666 666
197 Bangladesh 26442 T 666 666
198 Bangladesh 26443 T 666 666
199 Bangladesh 26444 C 666 666
200 Bangladesh 26445 T 666 666
201 Bangladesh 26446 T 666 666
202 Bangladesh 26447 C 666 666
203 Bangladesh 26448 T C 666 664 Ser68Ser
204 Bangladesh 26449 A 666 666
205 Bangladesh 26450 G 666 666
206 Bangladesh 26451 A 666 666
207 Bangladesh 26452 G 666 666
208 Bangladesh 26453 T 666 666
209 Bangladesh 26454 T 666 666
210 Bangladesh 26455 C 666 666
211 Bangladesh 26456 C T 666 665 Pro71Leu
212 Bangladesh 26457 T 666 666
213 Bangladesh 26458 G 666 666
214 Bangladesh 26459 A 666 666
215 Bangladesh 26460 T 666 666
216 Bangladesh 26461 C 666 666
217 Bangladesh 26462 T 666 666
218 Bangladesh 26463 T 666 666
219 Bangladesh 26464 C 666 666
220 Bangladesh 26465 T 665 665
221 Bangladesh 26466 G 665 665
222 Bangladesh 26467 G 665 664
223 Bangladesh 26468 T 665 665
224 Bangladesh 26469 C 665 665
225 Bangladesh 26470 T 665 665
226 Bangladesh 26471 A 665 665
227 Bangladesh 26472 A 665 665