National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G I K L M N P R S T V Y
*     2                                  
-     228                                  
?                                        
A     12                                  
C     9                                  
D     3                                  
E     6                                  
F     15                                  
G     3                                  
I     9                                  
K     6                                  
L     43                                  
M     3                                  
N     15                                  
P     6                                  
R     9                                  
S     24                                  
T     12                                  
V     39                                  
Y     12                                  

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Bahrain 26245 A 150 150
1 Bahrain 26246 T 150 150
2 Bahrain 26247 G 150 150
3 Bahrain 26248 T 150 150
4 Bahrain 26249 A 150 150
5 Bahrain 26250 C 150 150
6 Bahrain 26251 T 150 150
7 Bahrain 26252 C 150 150
8 Bahrain 26253 A 150 150
9 Bahrain 26254 T 150 150
10 Bahrain 26255 T 150 150
11 Bahrain 26256 C 150 150
12 Bahrain 26257 G 150 150
13 Bahrain 26258 T 150 150
14 Bahrain 26259 T 150 150
15 Bahrain 26260 T 150 150
16 Bahrain 26261 C 150 150
17 Bahrain 26262 G 150 150
18 Bahrain 26263 G 150 150
19 Bahrain 26264 A 150 150
20 Bahrain 26265 A 150 150
21 Bahrain 26266 G 150 150
22 Bahrain 26267 A 150 150
23 Bahrain 26268 G 150 150
24 Bahrain 26269 A 150 150
25 Bahrain 26270 C 150 150
26 Bahrain 26271 A 150 150
27 Bahrain 26272 G 150 150
28 Bahrain 26273 G 150 150
29 Bahrain 26274 T 150 150
30 Bahrain 26275 A 150 150
31 Bahrain 26276 C 150 150
32 Bahrain 26277 G 150 150
33 Bahrain 26278 T 150 150
34 Bahrain 26279 T 150 150
35 Bahrain 26280 A 150 150
36 Bahrain 26281 A 150 150
37 Bahrain 26282 T 150 150
38 Bahrain 26283 A 150 150
39 Bahrain 26284 G 150 150
40 Bahrain 26285 T 150 150
41 Bahrain 26286 T 150 150
42 Bahrain 26287 A 150 150
43 Bahrain 26288 A 150 150
44 Bahrain 26289 T 150 150
45 Bahrain 26290 A 150 150
46 Bahrain 26291 G 150 150
47 Bahrain 26292 C 150 150
48 Bahrain 26293 G 150 150
49 Bahrain 26294 T 150 150
50 Bahrain 26295 A 150 150
51 Bahrain 26296 C 150 150
52 Bahrain 26297 T 150 150
53 Bahrain 26298 T 150 150
54 Bahrain 26299 C 150 150
55 Bahrain 26300 T 150 150
56 Bahrain 26301 T 150 150
57 Bahrain 26302 T 150 150
58 Bahrain 26303 T 150 150
59 Bahrain 26304 T 150 150
60 Bahrain 26305 C 150 150
61 Bahrain 26306 T 150 150
62 Bahrain 26307 T 150 150
63 Bahrain 26308 G 150 150
64 Bahrain 26309 C 150 150
65 Bahrain 26310 T 150 150
66 Bahrain 26311 T 150 150
67 Bahrain 26312 T 150 150
68 Bahrain 26313 C 150 150
69 Bahrain 26314 G 150 150
70 Bahrain 26315 T 150 150
71 Bahrain 26316 G 150 150
72 Bahrain 26317 G 150 150
73 Bahrain 26318 T 150 150
74 Bahrain 26319 A 150 150
75 Bahrain 26320 T 150 150
76 Bahrain 26321 T 150 150
77 Bahrain 26322 C 150 150
78 Bahrain 26323 T 150 150
79 Bahrain 26324 T 150 150
80 Bahrain 26325 G 150 150
81 Bahrain 26326 C 150 150
82 Bahrain 26327 T 150 150
83 Bahrain 26328 A 150 150
84 Bahrain 26329 G 150 150
85 Bahrain 26330 T 150 150
86 Bahrain 26331 T 150 150
87 Bahrain 26332 A 150 150
88 Bahrain 26333 C 150 150
89 Bahrain 26334 A 150 150
90 Bahrain 26335 C 150 150
91 Bahrain 26336 T 150 150
92 Bahrain 26337 A 150 150
93 Bahrain 26338 G 150 150
94 Bahrain 26339 C 150 150
95 Bahrain 26340 C 150 150
96 Bahrain 26341 A 150 150
97 Bahrain 26342 T 150 150
98 Bahrain 26343 C 150 150
99 Bahrain 26344 C 150 150
100 Bahrain 26345 T 150 150
101 Bahrain 26346 T 150 150
102 Bahrain 26347 A 150 150
103 Bahrain 26348 C 150 150
104 Bahrain 26349 T 150 150
105 Bahrain 26350 G 150 150
106 Bahrain 26351 C 150 150
107 Bahrain 26352 G 150 150
108 Bahrain 26353 C 150 150
109 Bahrain 26354 T 150 150
110 Bahrain 26355 T 150 150
111 Bahrain 26356 C 150 150
112 Bahrain 26357 G 150 150
113 Bahrain 26358 A 150 150
114 Bahrain 26359 T 150 150
115 Bahrain 26360 T 150 150
116 Bahrain 26361 G 150 150
117 Bahrain 26362 T 150 150
118 Bahrain 26363 G 150 150
119 Bahrain 26364 T 150 150
120 Bahrain 26365 G 150 150
121 Bahrain 26366 C 150 150
122 Bahrain 26367 G 150 150
123 Bahrain 26368 T 150 150
124 Bahrain 26369 A 150 150
125 Bahrain 26370 C 150 150
126 Bahrain 26371 T 150 150
127 Bahrain 26372 G 150 150
128 Bahrain 26373 C 150 150
129 Bahrain 26374 T 150 150
130 Bahrain 26375 G 150 150
131 Bahrain 26376 C 150 150
132 Bahrain 26377 A 150 150
133 Bahrain 26378 A 150 150
134 Bahrain 26379 T 150 150
135 Bahrain 26380 A 150 150
136 Bahrain 26381 T 150 150
137 Bahrain 26382 T 150 150
138 Bahrain 26383 G 150 150
139 Bahrain 26384 T 150 150
140 Bahrain 26385 T 150 150
141 Bahrain 26386 A 150 150
142 Bahrain 26387 A 150 150
143 Bahrain 26388 C 150 150
144 Bahrain 26389 G 150 150
145 Bahrain 26390 T 150 150
146 Bahrain 26391 G 150 150
147 Bahrain 26392 A 150 150
148 Bahrain 26393 G 150 150
149 Bahrain 26394 T 150 150
150 Bahrain 26395 C 150 150
151 Bahrain 26396 T 150 150
152 Bahrain 26397 T 150 150
153 Bahrain 26398 G 150 150
154 Bahrain 26399 T 150 150
155 Bahrain 26400 A 150 150
156 Bahrain 26401 A 150 150
157 Bahrain 26402 A 150 150
158 Bahrain 26403 A 150 150
159 Bahrain 26404 C 150 150
160 Bahrain 26405 C 150 150
161 Bahrain 26406 T 150 150
162 Bahrain 26407 T 150 150
163 Bahrain 26408 C 150 150
164 Bahrain 26409 T 150 150
165 Bahrain 26410 T 150 150
166 Bahrain 26411 T 150 150
167 Bahrain 26412 T 150 150
168 Bahrain 26413 T 150 150
169 Bahrain 26414 A 150 150
170 Bahrain 26415 C 150 150
171 Bahrain 26416 G 150 150
172 Bahrain 26417 T 150 150
173 Bahrain 26418 T 150 150
174 Bahrain 26419 T 150 150
175 Bahrain 26420 A 150 150
176 Bahrain 26421 C 150 150
177 Bahrain 26422 T 150 150
178 Bahrain 26423 C 150 150
179 Bahrain 26424 T 150 150
180 Bahrain 26425 C 150 150
181 Bahrain 26426 G 150 150
182 Bahrain 26427 T 150 150
183 Bahrain 26428 G 150 150
184 Bahrain 26429 T 150 150
185 Bahrain 26430 T 150 150
186 Bahrain 26431 A 150 150
187 Bahrain 26432 A 150 150
188 Bahrain 26433 A 150 150
189 Bahrain 26434 A 150 150
190 Bahrain 26435 A 150 150
191 Bahrain 26436 T 150 150
192 Bahrain 26437 C 150 150
193 Bahrain 26438 T 150 150
194 Bahrain 26439 G 150 150
195 Bahrain 26440 A 150 150
196 Bahrain 26441 A 150 150
197 Bahrain 26442 T 150 150
198 Bahrain 26443 T 150 150
199 Bahrain 26444 C 150 150
200 Bahrain 26445 T 150 150
201 Bahrain 26446 T 150 150
202 Bahrain 26447 C 150 150
203 Bahrain 26448 T 150 150
204 Bahrain 26449 A 150 150
205 Bahrain 26450 G 150 150
206 Bahrain 26451 A 150 150
207 Bahrain 26452 G 150 150
208 Bahrain 26453 T 150 150
209 Bahrain 26454 T 150 150
210 Bahrain 26455 C 150 150
211 Bahrain 26456 C 150 150
212 Bahrain 26457 T 150 150
213 Bahrain 26458 G 150 150
214 Bahrain 26459 A 150 150
215 Bahrain 26460 T 150 150
216 Bahrain 26461 C 150 150
217 Bahrain 26462 T 150 150
218 Bahrain 26463 T 150 150
219 Bahrain 26464 C 150 150
220 Bahrain 26465 T 150 150
221 Bahrain 26466 G 150 150
222 Bahrain 26467 G 150 150
223 Bahrain 26468 T 150 150
224 Bahrain 26469 C 150 150
225 Bahrain 26470 T 150 150
226 Bahrain 26471 A 150 150
227 Bahrain 26472 A 150 150