National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G I K L M N P R S T V Y
*     2                                  
-     228                                  
?                                        
A     12 1                                
C     9                                  
D     3                                  
E     6     1                            
F     15         1                        
G     3                                  
I     9             1                    
K     6                                  
L     43         1                        
M     3                                  
N     15                                  
P     6                 1                
R     9                                  
S     24                           1      
T     12                                  
V     39         2                     1  
Y     12                                  

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Austria 26245 A 1342 1342
1 Austria 26246 T 1342 1342
2 Austria 26247 G 1342 1342
3 Austria 26248 T 1342 1341
4 Austria 26249 A 1342 1342
5 Austria 26250 C 1342 1342
6 Austria 26251 T 1342 1342
7 Austria 26252 C 1342 1342
8 Austria 26253 A 1342 1342
9 Austria 26254 T 1342 1342
10 Austria 26255 T 1342 1342
11 Austria 26256 C 1342 1342
12 Austria 26257 G 1342 1342
13 Austria 26258 T 1342 1342
14 Austria 26259 T 1342 1342
15 Austria 26260 T 1342 1342
16 Austria 26261 C 1342 1341
17 Austria 26262 G T 1342 1341 Ser6Ser
18 Austria 26263 G 1342 1342
19 Austria 26264 A 1342 1342
20 Austria 26265 A T 1342 1341 Glu7Asp
21 Austria 26266 G 1342 1342
22 Austria 26267 A 1342 1342
23 Austria 26268 G 1342 1342
24 Austria 26269 A 1342 1341
25 Austria 26270 C 1342 1342
26 Austria 26271 A 1342 1341
27 Austria 26272 G 1342 1342
28 Austria 26273 G 1342 1342
29 Austria 26274 T 1342 1342
30 Austria 26275 A 1342 1342
31 Austria 26276 C 1342 1342
32 Austria 26277 G 1342 1342
33 Austria 26278 T 1342 1342
34 Austria 26279 T 1342 1342
35 Austria 26280 A 1342 1342
36 Austria 26281 A 1342 1342
37 Austria 26282 T 1342 1342
38 Austria 26283 A 1342 1342
39 Austria 26284 G 1342 1342
40 Austria 26285 T 1342 1342
41 Austria 26286 T 1342 1342
42 Austria 26287 A 1342 1342
43 Austria 26288 A 1342 1342
44 Austria 26289 T 1342 1342
45 Austria 26290 A 1342 1342
46 Austria 26291 G 1339 1339
47 Austria 26292 C 1339 1339
48 Austria 26293 G 1339 1339
49 Austria 26294 T 1339 1339
50 Austria 26295 A 1339 1339
51 Austria 26296 C 1339 1339
52 Austria 26297 T 1339 1339
53 Austria 26298 T 1339 1339
54 Austria 26299 C 1339 1339
55 Austria 26300 T 1339 1339
56 Austria 26301 T 1339 1339
57 Austria 26302 T 1339 1339
58 Austria 26303 T 1339 1339
59 Austria 26304 T 1339 1339
60 Austria 26305 C 1339 1339
61 Austria 26306 T 1339 1339
62 Austria 26307 T 1339 1339
63 Austria 26308 G 1339 1339
64 Austria 26309 C 1339 1339
65 Austria 26310 T 1339 1339
66 Austria 26311 T 1339 1339
67 Austria 26312 T 1339 1339
68 Austria 26313 C T 1339 1323 Phe23Phe
69 Austria 26314 G 1339 1339
70 Austria 26315 T 1339 1339
71 Austria 26316 G 1339 1339
72 Austria 26317 G 1339 1339
73 Austria 26318 T 1339 1339
74 Austria 26319 A G 1339 1337 Val25Val
75 Austria 26320 T 1339 1339
76 Austria 26321 T 1339 1339
77 Austria 26322 C 1339 1339
78 Austria 26323 T 1339 1339
79 Austria 26324 T 1339 1339
80 Austria 26325 G 1339 1339
81 Austria 26326 C 1339 1339
82 Austria 26327 T 1339 1339
83 Austria 26328 A 1339 1339
84 Austria 26329 G 1339 1339
85 Austria 26330 T 1339 1339
86 Austria 26331 T 1339 1339
87 Austria 26332 A 1339 1339
88 Austria 26333 C 1339 1338
89 Austria 26334 A 1339 1339
90 Austria 26335 C 1339 1339
91 Austria 26336 T 1339 1339
92 Austria 26337 A 1339 1339
93 Austria 26338 G 1339 1339
94 Austria 26339 C 1339 1339
95 Austria 26340 C 1340 1340
96 Austria 26341 A 1340 1340
97 Austria 26342 T 1340 1340
98 Austria 26343 C 1340 1340
99 Austria 26344 C 1340 1340
100 Austria 26345 T 1340 1340
101 Austria 26346 T 1340 1340
102 Austria 26347 A 1340 1340
103 Austria 26348 C 1340 1340
104 Austria 26349 T 1340 1340
105 Austria 26350 G 1340 1340
106 Austria 26351 C 1340 1340
107 Austria 26352 G 1340 1340
108 Austria 26353 C 1340 1340
109 Austria 26354 T 1340 1340
110 Austria 26355 T 1340 1340
111 Austria 26356 C 1340 1339
112 Austria 26357 G 1340 1340
113 Austria 26358 A 1340 1340
114 Austria 26359 T 1340 1340
115 Austria 26360 T 1340 1340
116 Austria 26361 G 1340 1340
117 Austria 26362 T 1340 1340
118 Austria 26363 G 1340 1340
119 Austria 26364 T 1340 1340
120 Austria 26365 G 1340 1340
121 Austria 26366 C 1340 1339
122 Austria 26367 G C 1340 1335 Ala41Ala
123 Austria 26368 T 1340 1340
124 Austria 26369 A 1340 1340
125 Austria 26370 C 1340 1340
126 Austria 26371 T 1340 1340
127 Austria 26372 G 1340 1340
128 Austria 26373 C 1340 1340
129 Austria 26374 T 1340 1340
130 Austria 26375 G 1340 1340
131 Austria 26376 C 1340 1340
132 Austria 26377 A 1340 1340
133 Austria 26378 A 1340 1340
134 Austria 26379 T 1340 1340
135 Austria 26380 A 1340 1340
136 Austria 26381 T 1340 1340
137 Austria 26382 T A 1340 1339 Ile46Ile
138 Austria 26383 G T 1340 1339 Val47Phe
139 Austria 26384 T 1340 1340
140 Austria 26385 T 1340 1340
141 Austria 26386 A 1340 1340
142 Austria 26387 A 1340 1340
143 Austria 26388 C 1340 1340
144 Austria 26389 G 1340 1340
145 Austria 26390 T 1340 1340
146 Austria 26391 G 1340 1340
147 Austria 26392 A 1340 1340
148 Austria 26393 G 1340 1340
149 Austria 26394 T 1340 1340
150 Austria 26395 C 1340 1340
151 Austria 26396 T 1340 1340
152 Austria 26397 T 1340 1340
153 Austria 26398 G 1340 1340
154 Austria 26399 T 1340 1340
155 Austria 26400 A 1340 1340
156 Austria 26401 A 1340 1340
157 Austria 26402 A 1340 1340
158 Austria 26403 A 1340 1340
159 Austria 26404 C 1340 1340
160 Austria 26405 C 1340 1340
161 Austria 26406 T 1340 1340
162 Austria 26407 T 1340 1340
163 Austria 26408 C 1340 1340
164 Austria 26409 T 1340 1340
165 Austria 26410 T 1340 1340
166 Austria 26411 T 1340 1340
167 Austria 26412 T 1340 1340
168 Austria 26413 T 1340 1340
169 Austria 26414 A 1340 1340
170 Austria 26415 C 1340 1340
171 Austria 26416 G T 1340 1339 Val58Phe
172 Austria 26417 T 1340 1340
173 Austria 26418 T 1340 1340
174 Austria 26419 T 1340 1340
175 Austria 26420 A 1340 1340
176 Austria 26421 C 1340 1340
177 Austria 26422 T 1340 1340
178 Austria 26423 C 1340 1339
179 Austria 26424 T 1340 1340
180 Austria 26425 C 1340 1340
181 Austria 26426 G 1340 1340
182 Austria 26427 T 1340 1340
183 Austria 26428 G 1340 1338
184 Austria 26429 T 1340 1340
185 Austria 26430 T 1340 1340
186 Austria 26431 A 1340 1339
187 Austria 26432 A 1340 1340
188 Austria 26433 A 1340 1340
189 Austria 26434 A 1340 1340
190 Austria 26435 A 1340 1339
191 Austria 26436 T 1340 1340
192 Austria 26437 C 1340 1340
193 Austria 26438 T 1340 1340
194 Austria 26439 G 1340 1340
195 Austria 26440 A 1340 1340
196 Austria 26441 A 1340 1340
197 Austria 26442 T 1340 1340
198 Austria 26443 T 1340 1340
199 Austria 26444 C 1340 1340
200 Austria 26445 T 1340 1340
201 Austria 26446 T 1340 1340
202 Austria 26447 C 1340 1340
203 Austria 26448 T 1340 1340
204 Austria 26449 A 1339 1339
205 Austria 26450 G 1339 1339
206 Austria 26451 A 1339 1339
207 Austria 26452 G 1339 1339
208 Austria 26453 T 1339 1339
209 Austria 26454 T 1339 1339
210 Austria 26455 C 1339 1339
211 Austria 26456 C T 1339 1338 Pro71Leu
212 Austria 26457 T 1339 1339
213 Austria 26458 G 1339 1339
214 Austria 26459 A 1339 1339
215 Austria 26460 T 1339 1339
216 Austria 26461 C T 1339 1337 Leu73Phe
217 Austria 26462 T 1339 1339
218 Austria 26463 T 1339 1339
219 Austria 26464 C 1339 1339
220 Austria 26465 T 1339 1339
221 Austria 26466 G 1339 1339
222 Austria 26467 G 1339 1339
223 Austria 26468 T 1339 1339
224 Austria 26469 C 1339 1339
225 Austria 26470 T 1339 1339
226 Austria 26471 A 1339 1339
227 Austria 26472 A 1339 1339