National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G H I K L M N P R S T V Y
*     2                                    
-     227                                    
?                                          
A     12 3                               1  
C     9                             1      
D     3           1                        
E     6                                    
F     15         3         1                
G     3                                    
H                                          
I     9                                    
K     6                 1                  
L     42         2         5 1           2  
M     3                                    
N     15             1                      
P     6                   1         1      
R     9   1           1   1                
S     24         2               1   6      
T     12               2                    
V     39         1     1   3 1           3  
Y     12             1                     2

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Australia 26245 A 17240 17240
1 Australia 26246 T 17240 17237
2 Australia 26247 G 17241 17241
3 Australia 26248 T 17241 17239
4 Australia 26249 A 17241 17241
5 Australia 26250 C T 17241 17239 Tyr2Tyr
6 Australia 26251 T 17241 17240
7 Australia 26252 C 17241 17241
8 Australia 26253 A C 17241 17234 Ser3Ser
9 Australia 26254 T 17241 17241
10 Australia 26255 T 17241 17240
11 Australia 26256 C T 17241 17234 Phe4Phe
12 Australia 26257 G C 17241 17236 Val5Leu
13 Australia 26258 T 17241 17240
14 Australia 26259 T 17241 17241
15 Australia 26260 T 17241 17241
16 Australia 26261 C 17241 17239
17 Australia 26262 G C,A 17241 17078 Ser6Ser-p.Ser6Ser
18 Australia 26263 G 17241 17237
19 Australia 26264 A 17241 17240
20 Australia 26265 A 17241 17241
21 Australia 26266 G 17242 17235
22 Australia 26267 A 17242 17241
23 Australia 26268 G 17242 17240
24 Australia 26269 A 17242 17242
25 Australia 26270 C T 17242 17237 Thr9Ile
26 Australia 26271 A 17242 17240
27 Australia 26272 G 17242 17237
28 Australia 26273 G 17242 17240
29 Australia 26274 T 17242 17239
30 Australia 26275 A 17242 17242
31 Australia 26276 C 17243 17242
32 Australia 26277 G 17243 17242
33 Australia 26278 T 17243 17242
34 Australia 26279 T 17243 17241
35 Australia 26280 A 17243 17242
36 Australia 26281 A 17242 17241
37 Australia 26282 T 17241 17237
38 Australia 26283 A 17241 17236
39 Australia 26284 G 17240 17227
40 Australia 26285 T 17238 17230
41 Australia 26286 T 17237 17232
42 Australia 26287 A 17237 17236
43 Australia 26288 A 17237 17236
44 Australia 26289 T 17237 17236
45 Australia 26290 A 17234 17234
46 Australia 26291 G 17205 17203
47 Australia 26292 C T 17200 17194 Ser16Ser
48 Australia 26293 G 17200 17196
49 Australia 26294 T 17199 17195
50 Australia 26295 A 17199 17194
51 Australia 26296 C 17199 17196
52 Australia 26297 T 17198 17196
53 Australia 26298 T 17197 17191
54 Australia 26299 C 17197 17179
55 Australia 26300 T 17195 17181
56 Australia 26301 T 17195 17192
57 Australia 26302 T 17195 17192
58 Australia 26303 T 17194 17191
59 Australia 26304 T 17192 17190
60 Australia 26305 C T,G 17189 17176 Leu21Phe-p.Leu21Val
61 Australia 26306 T 17182 17178
62 Australia 26307 T 17160 17155
63 Australia 26308 G 17155 17143
64 Australia 26309 C T 17139 17124 Ala22Val
65 Australia 26310 T 17134 17122
66 Australia 26311 T C 17134 17122 Phe23Leu
67 Australia 26312 T 17134 17123
68 Australia 26313 C T 17134 17115 Phe23Phe
69 Australia 26314 G A 17134 17122 Val24Met
70 Australia 26315 T 17134 17123
71 Australia 26316 G 17134 17124
72 Australia 26317 G 17134 17126
73 Australia 26318 T 17133 17125
74 Australia 26319 A G 17133 17123 Val25Val
75 Australia 26320 T 17133 17127
76 Australia 26321 T 17133 17126
77 Australia 26322 C T 17133 17124 Phe26Phe
78 Australia 26323 T 17133 17125
79 Australia 26324 T 17133 17125
80 Australia 26325 G 17133 17126
81 Australia 26326 C T 17132 17118 Leu28Leu
82 Australia 26327 T 17132 17126
83 Australia 26328 A 17132 17126
84 Australia 26329 G 17132 17126
85 Australia 26330 T 17132 17126
86 Australia 26331 T 17132 17125
87 Australia 26332 A 17132 17127
88 Australia 26333 C T 17132 17122 Thr30Ile
89 Australia 26334 A 17132 17125
90 Australia 26335 C 17132 17126
91 Australia 26336 T 17132 17125
92 Australia 26337 A 17132 17125
93 Australia 26338 G 17132 17125
94 Australia 26339 C 17132 17124
95 Australia 26340 C T 17133 17125 Ala32Ala
96 Australia 26341 A 17134 17131
97 Australia 26342 T 17134 17131
98 Australia 26343 C 17134 17131
99 Australia 26344 C 17134 17133
100 Australia 26345 T 17133 17132
101 Australia 26346 T 17133 17132
102 Australia 26347 A 17133 17130
103 Australia 26348 C 17133 17130
104 Australia 26349 T 17133 17129
105 Australia 26350 G 17133 17128
106 Australia 26351 C 17133 17127
107 Australia 26352 G 17133 17129
108 Australia 26353 C 17133 17128
109 Australia 26354 T 17133 17128
110 Australia 26355 T 17133 17128
111 Australia 26356 C 17133 17128
112 Australia 26357 G 17131 17117
113 Australia 26358 A 17131 17128
114 Australia 26359 T 17131 17127
115 Australia 26360 T 17131 17126
116 Australia 26361 G 17131 17125
117 Australia 26362 T 17131 17124
118 Australia 26363 G 17131 17121
119 Australia 26364 T 17130 17125
120 Australia 26365 G 17130 17124
121 Australia 26366 C 17129 17124
122 Australia 26367 G T,A 17129 17121 Ala41Ala-p.Ala41Ala
123 Australia 26368 T 17129 17125
124 Australia 26369 A 17128 17122
125 Australia 26370 C T 17128 17122 Tyr42Tyr
126 Australia 26371 T 17128 17124
127 Australia 26372 G C 17128 17124 Cys43Ser
128 Australia 26373 C 17127 17123
129 Australia 26374 T 17126 17122
130 Australia 26375 G 17126 17121
131 Australia 26376 C 17125 17118
132 Australia 26377 A 17125 17118
133 Australia 26378 A 17125 17118
134 Australia 26379 T 17123 17115
135 Australia 26380 A 17121 17116
136 Australia 26381 T 17120 17114
137 Australia 26382 T 17120 17114
138 Australia 26383 G 17118 17113
139 Australia 26384 T 17118 17115
140 Australia 26385 T 17118 17117
141 Australia 26386 A 17116 17113
142 Australia 26387 A 17116 17114
143 Australia 26388 C 17116 17112
144 Australia 26389 G T 17115 17106 Val49Leu
145 Australia 26390 T 17113 17108
146 Australia 26391 G 17113 17108
147 Australia 26392 A 17113 17107
148 Australia 26393 G 17113 17107
149 Australia 26394 T 17113 17109
150 Australia 26395 C 17113 17106
151 Australia 26396 T 17113 17107
152 Australia 26397 T 17113 17107
153 Australia 26398 G C,A 17113 17106 Val52Leu-p.Val52Ile
154 Australia 26399 T 17113 17110
155 Australia 26400 A T 17114 17109 Val52Val
156 Australia 26401 A 17114 17112
157 Australia 26402 A 17113 17112
158 Australia 26403 A 17110 17106
159 Australia 26404 C 17110 17103
160 Australia 26405 C 17109 17104
161 Australia 26406 T 17109 17105
162 Australia 26407 T 17109 17104
163 Australia 26408 C T 17109 17096 Ser55Phe
164 Australia 26409 T 17109 17073
165 Australia 26410 T 17109 17097
166 Australia 26411 T 17109 17102
167 Australia 26412 T 17109 17107
168 Australia 26413 T 17109 17107
169 Australia 26414 A 17109 17107
170 Australia 26415 C 17109 17108
171 Australia 26416 G 17109 17102
172 Australia 26417 T 17109 17107
173 Australia 26418 T 17108 17105
174 Australia 26419 T C 17108 17106 Tyr59His
175 Australia 26420 A 17108 17107
176 Australia 26421 C 17108 17107
177 Australia 26422 T 17108 17107
178 Australia 26423 C 17108 17107
179 Australia 26424 T G,C 17108 16940 Ser60Ser-p.Ser60Ser
180 Australia 26425 C T 17108 17102 Arg61Cys
181 Australia 26426 G T 17108 17106 Arg61Leu
182 Australia 26427 T 17108 17103
183 Australia 26428 G T 17108 17059 Val62Phe
184 Australia 26429 T 17109 17108
185 Australia 26430 T 17109 17107
186 Australia 26431 A 17109 17106
187 Australia 26432 A 17108 17108
188 Australia 26433 A G 17108 17103 Lys63Lys
189 Australia 26434 A 17108 17108
190 Australia 26435 A 17108 17107
191 Australia 26436 T 17108 17106
192 Australia 26437 C T 17108 17103 Leu65Leu
193 Australia 26438 T 17107 17106
194 Australia 26439 G T 17107 17103 Leu65Leu
195 Australia 26440 A C 17107 17104 Asn66His
196 Australia 26441 A 17107 17107
197 Australia 26442 T 17107 17106
198 Australia 26443 T C 17107 17106 Ser67Pro
199 Australia 26444 C 17107 17106
200 Australia 26445 T 17107 17106
201 Australia 26446 T 17107 17104
202 Australia 26447 C T 17107 17084 Ser68Phe
203 Australia 26448 T 17107 17106
204 Australia 26449 A 17107 17105
205 Australia 26450 G T 17107 17104 Arg69Ile
206 Australia 26451 A 17105 17102
207 Australia 26452 G 17105 17103
208 Australia 26453 T 17100 17099
209 Australia 26454 T 17100 17099
210 Australia 26455 C T 17100 17096 Pro71Ser
211 Australia 26456 C T 17099 17082 Pro71Leu
212 Australia 26457 T 17099 17098
213 Australia 26458 G 17099 17099
214 Australia 26459 A G 17099 17098 Asp72Gly
215 Australia 26460 T 17099 17098
216 Australia 26461 C T 17097 17084 Leu73Phe
217 Australia 26462 T 17097 17096
218 Australia 26463 T 17097 17095
219 Australia 26464 C A,T,G 17097 17050 Leu74Val-p.Leu74Leu
220 Australia 26465 T 17097 17097
221 Australia 26466 G A 17096 17087 Leu74Leu
222 Australia 26467 G 17096 17093
223 Australia 26468 T 17096 17095
224 Australia 26469 C T 17096 17085 Val75Val
225 Australia 26470 T 17095 17094
226 Australia 26471 A 17094 17094
227 Australia 26472 A 17093 17093