National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G I K L M N P R S T V Y
*     2                                  
-     228                                  
?                                        
A     12                                  
C     9                                  
D     3                                  
E     6                                  
F     15                                  
G     3                                  
I     9                                  
K     6                                  
L     43                                  
M     3                                  
N     15                                  
P     6                                  
R     9                                  
S     24                                  
T     12                                  
V     39                                  
Y     12                                  

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Aruba 26245 A 11 11
1 Aruba 26246 T 11 11
2 Aruba 26247 G 11 11
3 Aruba 26248 T 11 11
4 Aruba 26249 A 11 11
5 Aruba 26250 C 11 11
6 Aruba 26251 T 11 11
7 Aruba 26252 C 11 11
8 Aruba 26253 A 11 11
9 Aruba 26254 T 11 11
10 Aruba 26255 T 11 11
11 Aruba 26256 C 11 11
12 Aruba 26257 G 11 11
13 Aruba 26258 T 11 11
14 Aruba 26259 T 11 11
15 Aruba 26260 T 11 11
16 Aruba 26261 C 11 11
17 Aruba 26262 G 11 11
18 Aruba 26263 G 11 11
19 Aruba 26264 A 11 11
20 Aruba 26265 A 11 11
21 Aruba 26266 G 11 11
22 Aruba 26267 A 11 11
23 Aruba 26268 G 11 11
24 Aruba 26269 A 11 11
25 Aruba 26270 C 11 11
26 Aruba 26271 A 11 11
27 Aruba 26272 G 11 11
28 Aruba 26273 G 11 11
29 Aruba 26274 T 11 11
30 Aruba 26275 A 11 11
31 Aruba 26276 C 11 11
32 Aruba 26277 G 11 11
33 Aruba 26278 T 11 11
34 Aruba 26279 T 11 11
35 Aruba 26280 A 11 11
36 Aruba 26281 A 11 11
37 Aruba 26282 T 11 11
38 Aruba 26283 A 11 11
39 Aruba 26284 G 11 11
40 Aruba 26285 T 11 11
41 Aruba 26286 T 11 11
42 Aruba 26287 A 11 11
43 Aruba 26288 A 11 11
44 Aruba 26289 T 11 11
45 Aruba 26290 A 11 11
46 Aruba 26291 G 11 11
47 Aruba 26292 C 11 11
48 Aruba 26293 G 11 11
49 Aruba 26294 T 11 11
50 Aruba 26295 A 11 11
51 Aruba 26296 C 11 11
52 Aruba 26297 T 11 11
53 Aruba 26298 T 11 11
54 Aruba 26299 C 11 11
55 Aruba 26300 T 11 11
56 Aruba 26301 T 11 11
57 Aruba 26302 T 11 11
58 Aruba 26303 T 11 11
59 Aruba 26304 T 11 11
60 Aruba 26305 C 11 11
61 Aruba 26306 T 11 11
62 Aruba 26307 T 11 11
63 Aruba 26308 G 11 11
64 Aruba 26309 C 11 11
65 Aruba 26310 T 11 11
66 Aruba 26311 T 11 11
67 Aruba 26312 T 11 11
68 Aruba 26313 C 11 11
69 Aruba 26314 G 11 11
70 Aruba 26315 T 11 11
71 Aruba 26316 G 11 11
72 Aruba 26317 G 11 11
73 Aruba 26318 T 11 11
74 Aruba 26319 A 11 11
75 Aruba 26320 T 11 11
76 Aruba 26321 T 11 11
77 Aruba 26322 C 11 11
78 Aruba 26323 T 11 11
79 Aruba 26324 T 11 11
80 Aruba 26325 G 11 11
81 Aruba 26326 C 11 11
82 Aruba 26327 T 11 11
83 Aruba 26328 A 11 11
84 Aruba 26329 G 11 11
85 Aruba 26330 T 11 11
86 Aruba 26331 T 11 11
87 Aruba 26332 A 11 11
88 Aruba 26333 C 11 11
89 Aruba 26334 A 11 11
90 Aruba 26335 C 11 11
91 Aruba 26336 T 11 11
92 Aruba 26337 A 11 11
93 Aruba 26338 G 11 11
94 Aruba 26339 C 11 11
95 Aruba 26340 C 11 11
96 Aruba 26341 A 11 11
97 Aruba 26342 T 11 11
98 Aruba 26343 C 11 11
99 Aruba 26344 C 11 11
100 Aruba 26345 T 11 11
101 Aruba 26346 T 11 11
102 Aruba 26347 A 11 11
103 Aruba 26348 C 11 11
104 Aruba 26349 T 11 11
105 Aruba 26350 G 11 11
106 Aruba 26351 C 11 11
107 Aruba 26352 G 11 11
108 Aruba 26353 C 11 11
109 Aruba 26354 T 11 11
110 Aruba 26355 T 11 11
111 Aruba 26356 C 11 11
112 Aruba 26357 G 11 11
113 Aruba 26358 A 11 11
114 Aruba 26359 T 11 11
115 Aruba 26360 T 11 11
116 Aruba 26361 G 11 11
117 Aruba 26362 T 11 11
118 Aruba 26363 G 11 11
119 Aruba 26364 T 11 11
120 Aruba 26365 G 11 11
121 Aruba 26366 C 11 11
122 Aruba 26367 G 11 11
123 Aruba 26368 T 11 11
124 Aruba 26369 A 11 11
125 Aruba 26370 C 11 11
126 Aruba 26371 T 11 11
127 Aruba 26372 G 11 11
128 Aruba 26373 C 11 11
129 Aruba 26374 T 11 11
130 Aruba 26375 G 11 11
131 Aruba 26376 C 11 11
132 Aruba 26377 A 11 11
133 Aruba 26378 A 11 11
134 Aruba 26379 T 11 11
135 Aruba 26380 A 11 11
136 Aruba 26381 T 11 11
137 Aruba 26382 T 11 11
138 Aruba 26383 G 11 11
139 Aruba 26384 T 11 11
140 Aruba 26385 T 11 11
141 Aruba 26386 A 11 11
142 Aruba 26387 A 11 11
143 Aruba 26388 C 11 11
144 Aruba 26389 G 11 11
145 Aruba 26390 T 11 11
146 Aruba 26391 G 11 11
147 Aruba 26392 A 11 11
148 Aruba 26393 G 11 11
149 Aruba 26394 T 11 11
150 Aruba 26395 C 11 11
151 Aruba 26396 T 11 11
152 Aruba 26397 T 11 11
153 Aruba 26398 G 11 11
154 Aruba 26399 T 11 11
155 Aruba 26400 A 11 11
156 Aruba 26401 A 11 11
157 Aruba 26402 A 11 11
158 Aruba 26403 A 11 11
159 Aruba 26404 C 11 11
160 Aruba 26405 C 11 11
161 Aruba 26406 T 11 11
162 Aruba 26407 T 11 11
163 Aruba 26408 C 11 11
164 Aruba 26409 T 11 11
165 Aruba 26410 T 11 11
166 Aruba 26411 T 11 11
167 Aruba 26412 T 11 11
168 Aruba 26413 T 11 11
169 Aruba 26414 A 11 11
170 Aruba 26415 C 11 11
171 Aruba 26416 G 11 11
172 Aruba 26417 T 11 11
173 Aruba 26418 T 11 11
174 Aruba 26419 T 11 11
175 Aruba 26420 A 11 11
176 Aruba 26421 C 11 11
177 Aruba 26422 T 11 11
178 Aruba 26423 C 11 11
179 Aruba 26424 T 11 11
180 Aruba 26425 C 11 11
181 Aruba 26426 G 11 11
182 Aruba 26427 T 11 11
183 Aruba 26428 G 11 11
184 Aruba 26429 T 11 11
185 Aruba 26430 T 11 11
186 Aruba 26431 A 11 11
187 Aruba 26432 A 11 11
188 Aruba 26433 A 11 11
189 Aruba 26434 A 11 11
190 Aruba 26435 A 11 11
191 Aruba 26436 T 11 11
192 Aruba 26437 C 11 11
193 Aruba 26438 T 11 11
194 Aruba 26439 G 11 11
195 Aruba 26440 A 11 11
196 Aruba 26441 A 11 11
197 Aruba 26442 T 11 11
198 Aruba 26443 T 11 11
199 Aruba 26444 C 11 11
200 Aruba 26445 T 11 11
201 Aruba 26446 T 11 11
202 Aruba 26447 C 11 11
203 Aruba 26448 T 11 11
204 Aruba 26449 A 11 11
205 Aruba 26450 G 11 11
206 Aruba 26451 A 11 11
207 Aruba 26452 G 11 11
208 Aruba 26453 T 11 11
209 Aruba 26454 T 11 11
210 Aruba 26455 C 11 11
211 Aruba 26456 C 11 11
212 Aruba 26457 T 11 11
213 Aruba 26458 G 11 11
214 Aruba 26459 A 11 11
215 Aruba 26460 T 11 11
216 Aruba 26461 C 11 11
217 Aruba 26462 T 11 11
218 Aruba 26463 T 11 11
219 Aruba 26464 C 11 11
220 Aruba 26465 T 11 11
221 Aruba 26466 G 11 11
222 Aruba 26467 G 11 11
223 Aruba 26468 T 11 11
224 Aruba 26469 C 11 11
225 Aruba 26470 T 11 11
226 Aruba 26471 A 11 11
227 Aruba 26472 A 11 11