National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G I K L M N P R S T V Y
*     2                                  
-     228                                  
?                                        
A     12                                  
C     9                                  
D     3                                  
E     6                                  
F     15                                  
G     3                                  
I     9                                  
K     6                                  
L     43                                  
M     3                                  
N     15                                  
P     6                                  
R     9                                  
S     24                                  
T     12                                  
V     39                                  
Y     12                                  

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Armenia 26245 A 3 3
1 Armenia 26246 T 3 3
2 Armenia 26247 G 3 3
3 Armenia 26248 T 3 3
4 Armenia 26249 A 3 3
5 Armenia 26250 C 3 3
6 Armenia 26251 T 3 3
7 Armenia 26252 C 3 3
8 Armenia 26253 A 3 3
9 Armenia 26254 T 3 3
10 Armenia 26255 T 3 3
11 Armenia 26256 C 3 3
12 Armenia 26257 G 3 3
13 Armenia 26258 T 3 3
14 Armenia 26259 T 3 3
15 Armenia 26260 T 3 3
16 Armenia 26261 C 3 3
17 Armenia 26262 G 3 3
18 Armenia 26263 G 3 3
19 Armenia 26264 A 3 3
20 Armenia 26265 A 3 3
21 Armenia 26266 G 3 3
22 Armenia 26267 A 3 3
23 Armenia 26268 G 3 3
24 Armenia 26269 A 3 3
25 Armenia 26270 C 3 3
26 Armenia 26271 A 3 3
27 Armenia 26272 G 3 3
28 Armenia 26273 G 3 3
29 Armenia 26274 T 3 3
30 Armenia 26275 A 3 3
31 Armenia 26276 C 3 3
32 Armenia 26277 G 3 3
33 Armenia 26278 T 3 3
34 Armenia 26279 T 3 3
35 Armenia 26280 A 3 3
36 Armenia 26281 A 3 3
37 Armenia 26282 T 3 3
38 Armenia 26283 A 3 3
39 Armenia 26284 G 3 3
40 Armenia 26285 T 3 3
41 Armenia 26286 T 3 3
42 Armenia 26287 A 3 3
43 Armenia 26288 A 3 3
44 Armenia 26289 T 3 3
45 Armenia 26290 A 3 3
46 Armenia 26291 G 3 3
47 Armenia 26292 C 3 3
48 Armenia 26293 G 3 3
49 Armenia 26294 T 3 3
50 Armenia 26295 A 3 3
51 Armenia 26296 C 3 3
52 Armenia 26297 T 3 3
53 Armenia 26298 T 3 3
54 Armenia 26299 C 3 3
55 Armenia 26300 T 3 3
56 Armenia 26301 T 3 3
57 Armenia 26302 T 3 3
58 Armenia 26303 T 3 3
59 Armenia 26304 T 3 3
60 Armenia 26305 C 3 3
61 Armenia 26306 T 3 3
62 Armenia 26307 T 3 3
63 Armenia 26308 G 3 3
64 Armenia 26309 C 3 3
65 Armenia 26310 T 3 3
66 Armenia 26311 T 3 3
67 Armenia 26312 T 3 3
68 Armenia 26313 C 3 3
69 Armenia 26314 G 3 3
70 Armenia 26315 T 3 3
71 Armenia 26316 G 3 3
72 Armenia 26317 G 3 3
73 Armenia 26318 T 3 3
74 Armenia 26319 A 3 3
75 Armenia 26320 T 3 3
76 Armenia 26321 T 3 3
77 Armenia 26322 C 3 3
78 Armenia 26323 T 3 3
79 Armenia 26324 T 3 3
80 Armenia 26325 G 3 3
81 Armenia 26326 C 3 3
82 Armenia 26327 T 3 3
83 Armenia 26328 A 3 3
84 Armenia 26329 G 3 3
85 Armenia 26330 T 3 3
86 Armenia 26331 T 3 3
87 Armenia 26332 A 3 3
88 Armenia 26333 C 3 3
89 Armenia 26334 A 3 3
90 Armenia 26335 C 3 3
91 Armenia 26336 T 3 3
92 Armenia 26337 A 3 3
93 Armenia 26338 G 3 3
94 Armenia 26339 C 3 3
95 Armenia 26340 C 3 3
96 Armenia 26341 A 3 3
97 Armenia 26342 T 3 3
98 Armenia 26343 C 3 3
99 Armenia 26344 C 3 3
100 Armenia 26345 T 3 3
101 Armenia 26346 T 3 3
102 Armenia 26347 A 3 3
103 Armenia 26348 C 3 3
104 Armenia 26349 T 3 3
105 Armenia 26350 G 3 3
106 Armenia 26351 C 3 3
107 Armenia 26352 G 3 3
108 Armenia 26353 C 3 3
109 Armenia 26354 T 3 3
110 Armenia 26355 T 3 3
111 Armenia 26356 C 3 3
112 Armenia 26357 G 3 3
113 Armenia 26358 A 3 3
114 Armenia 26359 T 3 3
115 Armenia 26360 T 3 3
116 Armenia 26361 G 3 3
117 Armenia 26362 T 3 3
118 Armenia 26363 G 3 3
119 Armenia 26364 T 3 3
120 Armenia 26365 G 3 3
121 Armenia 26366 C 3 3
122 Armenia 26367 G 3 3
123 Armenia 26368 T 3 3
124 Armenia 26369 A 3 3
125 Armenia 26370 C 3 3
126 Armenia 26371 T 3 3
127 Armenia 26372 G 3 3
128 Armenia 26373 C 3 3
129 Armenia 26374 T 3 3
130 Armenia 26375 G 3 3
131 Armenia 26376 C 3 3
132 Armenia 26377 A 3 3
133 Armenia 26378 A 3 3
134 Armenia 26379 T 3 3
135 Armenia 26380 A 3 3
136 Armenia 26381 T 3 3
137 Armenia 26382 T 3 3
138 Armenia 26383 G 3 3
139 Armenia 26384 T 3 3
140 Armenia 26385 T 3 3
141 Armenia 26386 A 3 3
142 Armenia 26387 A 3 3
143 Armenia 26388 C 3 3
144 Armenia 26389 G 3 3
145 Armenia 26390 T 3 3
146 Armenia 26391 G 3 3
147 Armenia 26392 A 3 3
148 Armenia 26393 G 3 3
149 Armenia 26394 T 3 3
150 Armenia 26395 C 3 3
151 Armenia 26396 T 3 3
152 Armenia 26397 T 3 3
153 Armenia 26398 G 3 3
154 Armenia 26399 T 3 3
155 Armenia 26400 A 3 3
156 Armenia 26401 A 3 3
157 Armenia 26402 A 3 3
158 Armenia 26403 A 3 3
159 Armenia 26404 C 3 3
160 Armenia 26405 C 3 3
161 Armenia 26406 T 3 3
162 Armenia 26407 T 3 3
163 Armenia 26408 C 3 3
164 Armenia 26409 T 3 3
165 Armenia 26410 T 3 3
166 Armenia 26411 T 3 3
167 Armenia 26412 T 3 3
168 Armenia 26413 T 3 3
169 Armenia 26414 A 3 3
170 Armenia 26415 C 3 3
171 Armenia 26416 G 3 3
172 Armenia 26417 T 3 3
173 Armenia 26418 T 3 3
174 Armenia 26419 T 3 3
175 Armenia 26420 A 3 3
176 Armenia 26421 C 3 3
177 Armenia 26422 T 3 3
178 Armenia 26423 C 3 3
179 Armenia 26424 T 3 3
180 Armenia 26425 C 3 3
181 Armenia 26426 G 3 3
182 Armenia 26427 T 3 3
183 Armenia 26428 G 3 3
184 Armenia 26429 T 3 3
185 Armenia 26430 T 3 3
186 Armenia 26431 A 3 3
187 Armenia 26432 A 3 3
188 Armenia 26433 A 3 3
189 Armenia 26434 A 3 3
190 Armenia 26435 A 3 3
191 Armenia 26436 T 3 3
192 Armenia 26437 C 3 3
193 Armenia 26438 T 3 3
194 Armenia 26439 G 3 3
195 Armenia 26440 A 3 3
196 Armenia 26441 A 3 3
197 Armenia 26442 T 3 3
198 Armenia 26443 T 3 3
199 Armenia 26444 C 3 3
200 Armenia 26445 T 3 3
201 Armenia 26446 T 3 3
202 Armenia 26447 C 3 3
203 Armenia 26448 T 3 3
204 Armenia 26449 A 3 3
205 Armenia 26450 G 3 3
206 Armenia 26451 A 3 3
207 Armenia 26452 G 3 3
208 Armenia 26453 T 3 3
209 Armenia 26454 T 3 3
210 Armenia 26455 C 3 3
211 Armenia 26456 C 3 3
212 Armenia 26457 T 3 3
213 Armenia 26458 G 3 3
214 Armenia 26459 A 3 3
215 Armenia 26460 T 3 3
216 Armenia 26461 C 3 3
217 Armenia 26462 T 3 3
218 Armenia 26463 T 3 3
219 Armenia 26464 C 3 3
220 Armenia 26465 T 3 3
221 Armenia 26466 G 3 3
222 Armenia 26467 G 3 3
223 Armenia 26468 T 3 3
224 Armenia 26469 C 3 3
225 Armenia 26470 T 3 3
226 Armenia 26471 A 3 3
227 Armenia 26472 A 3 3