National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G I K L M N P R S T V Y
*     2                                  
-     228                                  
?                                        
A     12                                  
C     9                                  
D     3                                  
E     6                                  
F     15                                  
G     3                                  
I     9                                  
K     6                                  
L     43                                  
M     3                                  
N     15                                  
P     6                                  
R     9                                  
S     24                                  
T     12                                  
V     39                                  
Y     12                                  

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Andorra 26245 A 1 1
1 Andorra 26246 T 1 1
2 Andorra 26247 G 1 1
3 Andorra 26248 T 1 1
4 Andorra 26249 A 1 1
5 Andorra 26250 C 1 1
6 Andorra 26251 T 1 1
7 Andorra 26252 C 1 1
8 Andorra 26253 A 1 1
9 Andorra 26254 T 1 1
10 Andorra 26255 T 1 1
11 Andorra 26256 C 1 1
12 Andorra 26257 G 1 1
13 Andorra 26258 T 1 1
14 Andorra 26259 T 1 1
15 Andorra 26260 T 1 1
16 Andorra 26261 C 1 1
17 Andorra 26262 G 1 1
18 Andorra 26263 G 1 1
19 Andorra 26264 A 1 1
20 Andorra 26265 A 1 1
21 Andorra 26266 G 1 1
22 Andorra 26267 A 1 1
23 Andorra 26268 G 1 1
24 Andorra 26269 A 1 1
25 Andorra 26270 C 1 1
26 Andorra 26271 A 1 1
27 Andorra 26272 G 1 1
28 Andorra 26273 G 1 1
29 Andorra 26274 T 1 1
30 Andorra 26275 A 1 1
31 Andorra 26276 C 1 1
32 Andorra 26277 G 1 1
33 Andorra 26278 T 1 1
34 Andorra 26279 T 1 1
35 Andorra 26280 A 1 1
36 Andorra 26281 A 1 1
37 Andorra 26282 T 1 1
38 Andorra 26283 A 1 1
39 Andorra 26284 G 1 1
40 Andorra 26285 T 1 1
41 Andorra 26286 T 1 1
42 Andorra 26287 A 1 1
43 Andorra 26288 A 1 1
44 Andorra 26289 T 1 1
45 Andorra 26290 A 1 1
46 Andorra 26291 G 1 1
47 Andorra 26292 C 1 1
48 Andorra 26293 G 1 1
49 Andorra 26294 T 1 1
50 Andorra 26295 A 1 1
51 Andorra 26296 C 1 1
52 Andorra 26297 T 1 1
53 Andorra 26298 T 1 1
54 Andorra 26299 C 1 1
55 Andorra 26300 T 1 1
56 Andorra 26301 T 1 1
57 Andorra 26302 T 1 1
58 Andorra 26303 T 1 1
59 Andorra 26304 T 1 1
60 Andorra 26305 C 1 1
61 Andorra 26306 T 1 1
62 Andorra 26307 T 1 1
63 Andorra 26308 G 1 1
64 Andorra 26309 C 1 1
65 Andorra 26310 T 1 1
66 Andorra 26311 T 1 1
67 Andorra 26312 T 1 1
68 Andorra 26313 C 1 1
69 Andorra 26314 G 1 1
70 Andorra 26315 T 1 1
71 Andorra 26316 G 1 1
72 Andorra 26317 G 1 1
73 Andorra 26318 T 1 1
74 Andorra 26319 A 1 1
75 Andorra 26320 T 1 1
76 Andorra 26321 T 1 1
77 Andorra 26322 C 1 1
78 Andorra 26323 T 1 1
79 Andorra 26324 T 1 1
80 Andorra 26325 G 1 1
81 Andorra 26326 C 1 1
82 Andorra 26327 T 1 1
83 Andorra 26328 A 1 1
84 Andorra 26329 G 1 1
85 Andorra 26330 T 1 1
86 Andorra 26331 T 1 1
87 Andorra 26332 A 1 1
88 Andorra 26333 C 1 1
89 Andorra 26334 A 1 1
90 Andorra 26335 C 1 1
91 Andorra 26336 T 1 1
92 Andorra 26337 A 1 1
93 Andorra 26338 G 1 1
94 Andorra 26339 C 1 1
95 Andorra 26340 C 1 1
96 Andorra 26341 A 1 1
97 Andorra 26342 T 1 1
98 Andorra 26343 C 1 1
99 Andorra 26344 C 1 1
100 Andorra 26345 T 1 1
101 Andorra 26346 T 1 1
102 Andorra 26347 A 1 1
103 Andorra 26348 C 1 1
104 Andorra 26349 T 1 1
105 Andorra 26350 G 1 1
106 Andorra 26351 C 1 1
107 Andorra 26352 G 1 1
108 Andorra 26353 C 1 1
109 Andorra 26354 T 1 1
110 Andorra 26355 T 1 1
111 Andorra 26356 C 1 1
112 Andorra 26357 G 1 1
113 Andorra 26358 A 1 1
114 Andorra 26359 T 1 1
115 Andorra 26360 T 1 1
116 Andorra 26361 G 1 1
117 Andorra 26362 T 1 1
118 Andorra 26363 G 1 1
119 Andorra 26364 T 1 1
120 Andorra 26365 G 1 1
121 Andorra 26366 C 1 1
122 Andorra 26367 G 1 1
123 Andorra 26368 T 1 1
124 Andorra 26369 A 1 1
125 Andorra 26370 C 1 1
126 Andorra 26371 T 1 1
127 Andorra 26372 G 1 1
128 Andorra 26373 C 1 1
129 Andorra 26374 T 1 1
130 Andorra 26375 G 1 1
131 Andorra 26376 C 1 1
132 Andorra 26377 A 1 1
133 Andorra 26378 A 1 1
134 Andorra 26379 T 1 1
135 Andorra 26380 A 1 1
136 Andorra 26381 T 1 1
137 Andorra 26382 T 1 1
138 Andorra 26383 G 1 1
139 Andorra 26384 T 1 1
140 Andorra 26385 T 1 1
141 Andorra 26386 A 1 1
142 Andorra 26387 A 1 1
143 Andorra 26388 C 1 1
144 Andorra 26389 G 1 1
145 Andorra 26390 T 1 1
146 Andorra 26391 G 1 1
147 Andorra 26392 A 1 1
148 Andorra 26393 G 1 1
149 Andorra 26394 T 1 1
150 Andorra 26395 C 1 1
151 Andorra 26396 T 1 1
152 Andorra 26397 T 1 1
153 Andorra 26398 G 1 1
154 Andorra 26399 T 1 1
155 Andorra 26400 A 1 1
156 Andorra 26401 A 1 1
157 Andorra 26402 A 1 1
158 Andorra 26403 A 1 1
159 Andorra 26404 C 1 1
160 Andorra 26405 C 1 1
161 Andorra 26406 T 1 1
162 Andorra 26407 T 1 1
163 Andorra 26408 C 1 1
164 Andorra 26409 T 1 1
165 Andorra 26410 T 1 1
166 Andorra 26411 T 1 1
167 Andorra 26412 T 1 1
168 Andorra 26413 T 1 1
169 Andorra 26414 A 1 1
170 Andorra 26415 C 1 1
171 Andorra 26416 G 1 1
172 Andorra 26417 T 1 1
173 Andorra 26418 T 1 1
174 Andorra 26419 T 1 1
175 Andorra 26420 A 1 1
176 Andorra 26421 C 1 1
177 Andorra 26422 T 1 1
178 Andorra 26423 C 1 1
179 Andorra 26424 T 1 1
180 Andorra 26425 C 1 1
181 Andorra 26426 G 1 1
182 Andorra 26427 T 1 1
183 Andorra 26428 G 1 1
184 Andorra 26429 T 1 1
185 Andorra 26430 T 1 1
186 Andorra 26431 A 1 1
187 Andorra 26432 A 1 1
188 Andorra 26433 A 1 1
189 Andorra 26434 A 1 1
190 Andorra 26435 A 1 1
191 Andorra 26436 T 1 1
192 Andorra 26437 C 1 1
193 Andorra 26438 T 1 1
194 Andorra 26439 G 1 1
195 Andorra 26440 A 1 1
196 Andorra 26441 A 1 1
197 Andorra 26442 T 1 1
198 Andorra 26443 T 1 1
199 Andorra 26444 C 1 1
200 Andorra 26445 T 1 1
201 Andorra 26446 T 1 1
202 Andorra 26447 C 1 1
203 Andorra 26448 T 1 1
204 Andorra 26449 A 1 1
205 Andorra 26450 G 1 1
206 Andorra 26451 A 1 1
207 Andorra 26452 G 1 1
208 Andorra 26453 T 1 1
209 Andorra 26454 T 1 1
210 Andorra 26455 C 1 1
211 Andorra 26456 C 1 1
212 Andorra 26457 T 1 1
213 Andorra 26458 G 1 1
214 Andorra 26459 A 1 1
215 Andorra 26460 T 1 1
216 Andorra 26461 C 1 1
217 Andorra 26462 T 1 1
218 Andorra 26463 T 1 1
219 Andorra 26464 C 1 1
220 Andorra 26465 T 1 1
221 Andorra 26466 G 1 1
222 Andorra 26467 G 1 1
223 Andorra 26468 T 1 1
224 Andorra 26469 C 1 1
225 Andorra 26470 T 1 1
226 Andorra 26471 A 1 1
227 Andorra 26472 A 1 1