National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G I K L M N P R S T V Y
*     2                                  
-     228                                  
?                                        
A     12                                  
C     9                                  
D     3                                  
E     6                                  
F     15                                  
G     3                                  
I     9                                  
K     6                                  
L     43         1                        
M     3                                  
N     15                                  
P     6                                  
R     9                                  
S     24                                  
T     12                                  
V     39                                  
Y     12                                  

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Algeria 26245 A 18 18
1 Algeria 26246 T 18 18
2 Algeria 26247 G 18 18
3 Algeria 26248 T 18 18
4 Algeria 26249 A 18 18
5 Algeria 26250 C 18 18
6 Algeria 26251 T 18 18
7 Algeria 26252 C 18 18
8 Algeria 26253 A 18 18
9 Algeria 26254 T 18 18
10 Algeria 26255 T 18 18
11 Algeria 26256 C 18 18
12 Algeria 26257 G 18 18
13 Algeria 26258 T 18 18
14 Algeria 26259 T 18 18
15 Algeria 26260 T 18 18
16 Algeria 26261 C 18 18
17 Algeria 26262 G 18 18
18 Algeria 26263 G 18 18
19 Algeria 26264 A 18 18
20 Algeria 26265 A 18 18
21 Algeria 26266 G 18 18
22 Algeria 26267 A 18 18
23 Algeria 26268 G 18 18
24 Algeria 26269 A 18 18
25 Algeria 26270 C 18 18
26 Algeria 26271 A 18 18
27 Algeria 26272 G 18 18
28 Algeria 26273 G 18 18
29 Algeria 26274 T 18 18
30 Algeria 26275 A 18 18
31 Algeria 26276 C 18 18
32 Algeria 26277 G 18 18
33 Algeria 26278 T 18 18
34 Algeria 26279 T 18 18
35 Algeria 26280 A 18 18
36 Algeria 26281 A 18 18
37 Algeria 26282 T 18 18
38 Algeria 26283 A 18 18
39 Algeria 26284 G 18 18
40 Algeria 26285 T 18 18
41 Algeria 26286 T 18 18
42 Algeria 26287 A 18 18
43 Algeria 26288 A 18 18
44 Algeria 26289 T 18 18
45 Algeria 26290 A 18 18
46 Algeria 26291 G 18 18
47 Algeria 26292 C 18 18
48 Algeria 26293 G 18 18
49 Algeria 26294 T 18 18
50 Algeria 26295 A 18 18
51 Algeria 26296 C 18 18
52 Algeria 26297 T 18 18
53 Algeria 26298 T 18 18
54 Algeria 26299 C 18 18
55 Algeria 26300 T 18 18
56 Algeria 26301 T 18 18
57 Algeria 26302 T 18 18
58 Algeria 26303 T 18 18
59 Algeria 26304 T 18 18
60 Algeria 26305 C 18 18
61 Algeria 26306 T 18 18
62 Algeria 26307 T 18 18
63 Algeria 26308 G 18 18
64 Algeria 26309 C 18 18
65 Algeria 26310 T 18 18
66 Algeria 26311 T 18 18
67 Algeria 26312 T 18 18
68 Algeria 26313 C 18 18
69 Algeria 26314 G 18 18
70 Algeria 26315 T 18 18
71 Algeria 26316 G 18 18
72 Algeria 26317 G 18 18
73 Algeria 26318 T 18 18
74 Algeria 26319 A 18 18
75 Algeria 26320 T 18 18
76 Algeria 26321 T 18 18
77 Algeria 26322 C 18 18
78 Algeria 26323 T 18 18
79 Algeria 26324 T 18 18
80 Algeria 26325 G 18 18
81 Algeria 26326 C 18 18
82 Algeria 26327 T 18 18
83 Algeria 26328 A 18 18
84 Algeria 26329 G 18 18
85 Algeria 26330 T 18 18
86 Algeria 26331 T 18 18
87 Algeria 26332 A 18 18
88 Algeria 26333 C 18 18
89 Algeria 26334 A 18 18
90 Algeria 26335 C 18 18
91 Algeria 26336 T 18 18
92 Algeria 26337 A 18 18
93 Algeria 26338 G 18 18
94 Algeria 26339 C 18 18
95 Algeria 26340 C 18 18
96 Algeria 26341 A 18 18
97 Algeria 26342 T 18 18
98 Algeria 26343 C 18 18
99 Algeria 26344 C 18 18
100 Algeria 26345 T 18 18
101 Algeria 26346 T 18 18
102 Algeria 26347 A 18 18
103 Algeria 26348 C 18 18
104 Algeria 26349 T 18 18
105 Algeria 26350 G 18 18
106 Algeria 26351 C 18 18
107 Algeria 26352 G 18 18
108 Algeria 26353 C 18 18
109 Algeria 26354 T 18 18
110 Algeria 26355 T 18 18
111 Algeria 26356 C 18 18
112 Algeria 26357 G 18 18
113 Algeria 26358 A 18 18
114 Algeria 26359 T 18 18
115 Algeria 26360 T 18 18
116 Algeria 26361 G 18 18
117 Algeria 26362 T 18 18
118 Algeria 26363 G 18 18
119 Algeria 26364 T 18 18
120 Algeria 26365 G 18 18
121 Algeria 26366 C 18 18
122 Algeria 26367 G 18 18
123 Algeria 26368 T 18 18
124 Algeria 26369 A 18 18
125 Algeria 26370 C 18 18
126 Algeria 26371 T 18 18
127 Algeria 26372 G 18 18
128 Algeria 26373 C 18 18
129 Algeria 26374 T 18 18
130 Algeria 26375 G 18 18
131 Algeria 26376 C 18 18
132 Algeria 26377 A 18 18
133 Algeria 26378 A 18 18
134 Algeria 26379 T 18 18
135 Algeria 26380 A 18 18
136 Algeria 26381 T 18 18
137 Algeria 26382 T 18 18
138 Algeria 26383 G 18 18
139 Algeria 26384 T 18 18
140 Algeria 26385 T 18 18
141 Algeria 26386 A 18 18
142 Algeria 26387 A 18 18
143 Algeria 26388 C 18 18
144 Algeria 26389 G 18 18
145 Algeria 26390 T 18 18
146 Algeria 26391 G 18 18
147 Algeria 26392 A 18 18
148 Algeria 26393 G 18 18
149 Algeria 26394 T 18 18
150 Algeria 26395 C 18 18
151 Algeria 26396 T 18 18
152 Algeria 26397 T 18 18
153 Algeria 26398 G 18 18
154 Algeria 26399 T 18 18
155 Algeria 26400 A 18 18
156 Algeria 26401 A 18 18
157 Algeria 26402 A 18 18
158 Algeria 26403 A 18 18
159 Algeria 26404 C 18 18
160 Algeria 26405 C 18 18
161 Algeria 26406 T 18 18
162 Algeria 26407 T 18 18
163 Algeria 26408 C 18 18
164 Algeria 26409 T 18 18
165 Algeria 26410 T 18 18
166 Algeria 26411 T 18 18
167 Algeria 26412 T 18 18
168 Algeria 26413 T 18 18
169 Algeria 26414 A 18 18
170 Algeria 26415 C 18 18
171 Algeria 26416 G 18 18
172 Algeria 26417 T 18 18
173 Algeria 26418 T 18 18
174 Algeria 26419 T 18 18
175 Algeria 26420 A 18 18
176 Algeria 26421 C 18 18
177 Algeria 26422 T 18 18
178 Algeria 26423 C 18 18
179 Algeria 26424 T 18 18
180 Algeria 26425 C 18 18
181 Algeria 26426 G 18 18
182 Algeria 26427 T 18 18
183 Algeria 26428 G 18 18
184 Algeria 26429 T 18 18
185 Algeria 26430 T 18 18
186 Algeria 26431 A 18 18
187 Algeria 26432 A 18 18
188 Algeria 26433 A 18 18
189 Algeria 26434 A 18 18
190 Algeria 26435 A 18 18
191 Algeria 26436 T 18 18
192 Algeria 26437 C 18 18
193 Algeria 26438 T 18 18
194 Algeria 26439 G 18 18
195 Algeria 26440 A 18 18
196 Algeria 26441 A 18 18
197 Algeria 26442 T 18 18
198 Algeria 26443 T 18 18
199 Algeria 26444 C 18 18
200 Algeria 26445 T 18 18
201 Algeria 26446 T 18 18
202 Algeria 26447 C 18 18
203 Algeria 26448 T 18 18
204 Algeria 26449 A 18 18
205 Algeria 26450 G 18 18
206 Algeria 26451 A 18 18
207 Algeria 26452 G 18 18
208 Algeria 26453 T 18 18
209 Algeria 26454 T 18 18
210 Algeria 26455 C 18 18
211 Algeria 26456 C 18 18
212 Algeria 26457 T 18 18
213 Algeria 26458 G 18 18
214 Algeria 26459 A 18 18
215 Algeria 26460 T 18 18
216 Algeria 26461 C T 18 17 Leu73Phe
217 Algeria 26462 T 18 18
218 Algeria 26463 T 18 18
219 Algeria 26464 C 18 18
220 Algeria 26465 T 18 18
221 Algeria 26466 G 18 18
222 Algeria 26467 G 18 18
223 Algeria 26468 T 18 18
224 Algeria 26469 C 18 18
225 Algeria 26470 T 18 18
226 Algeria 26471 A 18 18
227 Algeria 26472 A 18 18