National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G I K L M N P R S T V Y
*     2                                  
-     228                                  
?                                        
A     12                                  
C     9                                  
D     3                                  
E     6                                  
F     15                                  
G     3                                  
I     9                                  
K     6                                  
L     43                                  
M     3                                  
N     15                                  
P     6                                  
R     9                                  
S     24                                  
T     12                                  
V     39                                  
Y     12                                  

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Albania 26245 A 1 1
1 Albania 26246 T 1 1
2 Albania 26247 G 1 1
3 Albania 26248 T 1 1
4 Albania 26249 A 1 1
5 Albania 26250 C 1 1
6 Albania 26251 T 1 1
7 Albania 26252 C 1 1
8 Albania 26253 A 1 1
9 Albania 26254 T 1 1
10 Albania 26255 T 1 1
11 Albania 26256 C 1 1
12 Albania 26257 G 1 1
13 Albania 26258 T 1 1
14 Albania 26259 T 1 1
15 Albania 26260 T 1 1
16 Albania 26261 C 1 1
17 Albania 26262 G 1 1
18 Albania 26263 G 1 1
19 Albania 26264 A 1 1
20 Albania 26265 A 1 1
21 Albania 26266 G 1 1
22 Albania 26267 A 1 1
23 Albania 26268 G 1 1
24 Albania 26269 A 1 1
25 Albania 26270 C 1 1
26 Albania 26271 A 1 1
27 Albania 26272 G 1 1
28 Albania 26273 G 1 1
29 Albania 26274 T 1 1
30 Albania 26275 A 1 1
31 Albania 26276 C 1 1
32 Albania 26277 G 1 1
33 Albania 26278 T 1 1
34 Albania 26279 T 1 1
35 Albania 26280 A 1 1
36 Albania 26281 A 1 1
37 Albania 26282 T 1 1
38 Albania 26283 A 1 1
39 Albania 26284 G 1 1
40 Albania 26285 T 1 1
41 Albania 26286 T 1 1
42 Albania 26287 A 1 1
43 Albania 26288 A 1 1
44 Albania 26289 T 1 1
45 Albania 26290 A 1 1
46 Albania 26291 G 1 1
47 Albania 26292 C 1 1
48 Albania 26293 G 1 1
49 Albania 26294 T 1 1
50 Albania 26295 A 1 1
51 Albania 26296 C 1 1
52 Albania 26297 T 1 1
53 Albania 26298 T 1 1
54 Albania 26299 C 1 1
55 Albania 26300 T 1 1
56 Albania 26301 T 1 1
57 Albania 26302 T 1 1
58 Albania 26303 T 1 1
59 Albania 26304 T 1 1
60 Albania 26305 C 1 1
61 Albania 26306 T 1 1
62 Albania 26307 T 1 1
63 Albania 26308 G 1 1
64 Albania 26309 C 1 1
65 Albania 26310 T 1 1
66 Albania 26311 T 1 1
67 Albania 26312 T 1 1
68 Albania 26313 C 1 1
69 Albania 26314 G 1 1
70 Albania 26315 T 1 1
71 Albania 26316 G 1 1
72 Albania 26317 G 1 1
73 Albania 26318 T 1 1
74 Albania 26319 A 1 1
75 Albania 26320 T 1 1
76 Albania 26321 T 1 1
77 Albania 26322 C 1 1
78 Albania 26323 T 1 1
79 Albania 26324 T 1 1
80 Albania 26325 G 1 1
81 Albania 26326 C 1 1
82 Albania 26327 T 1 1
83 Albania 26328 A 1 1
84 Albania 26329 G 1 1
85 Albania 26330 T 1 1
86 Albania 26331 T 1 1
87 Albania 26332 A 1 1
88 Albania 26333 C 1 1
89 Albania 26334 A 1 1
90 Albania 26335 C 1 1
91 Albania 26336 T 1 1
92 Albania 26337 A 1 1
93 Albania 26338 G 1 1
94 Albania 26339 C 1 1
95 Albania 26340 C 1 1
96 Albania 26341 A 1 1
97 Albania 26342 T 1 1
98 Albania 26343 C 1 1
99 Albania 26344 C 1 1
100 Albania 26345 T 1 1
101 Albania 26346 T 1 1
102 Albania 26347 A 1 1
103 Albania 26348 C 1 1
104 Albania 26349 T 1 1
105 Albania 26350 G 1 1
106 Albania 26351 C 1 1
107 Albania 26352 G 1 1
108 Albania 26353 C 1 1
109 Albania 26354 T 1 1
110 Albania 26355 T 1 1
111 Albania 26356 C 1 1
112 Albania 26357 G 1 1
113 Albania 26358 A 1 1
114 Albania 26359 T 1 1
115 Albania 26360 T 1 1
116 Albania 26361 G 1 1
117 Albania 26362 T 1 1
118 Albania 26363 G 1 1
119 Albania 26364 T 1 1
120 Albania 26365 G 1 1
121 Albania 26366 C 1 1
122 Albania 26367 G 1 1
123 Albania 26368 T 1 1
124 Albania 26369 A 1 1
125 Albania 26370 C 1 1
126 Albania 26371 T 1 1
127 Albania 26372 G 1 1
128 Albania 26373 C 1 1
129 Albania 26374 T 1 1
130 Albania 26375 G 1 1
131 Albania 26376 C 1 1
132 Albania 26377 A 1 1
133 Albania 26378 A 1 1
134 Albania 26379 T 1 1
135 Albania 26380 A 1 1
136 Albania 26381 T 1 1
137 Albania 26382 T 1 1
138 Albania 26383 G 1 1
139 Albania 26384 T 1 1
140 Albania 26385 T 1 1
141 Albania 26386 A 1 1
142 Albania 26387 A 1 1
143 Albania 26388 C 1 1
144 Albania 26389 G 1 1
145 Albania 26390 T 1 1
146 Albania 26391 G 1 1
147 Albania 26392 A 1 1
148 Albania 26393 G 1 1
149 Albania 26394 T 1 1
150 Albania 26395 C 1 1
151 Albania 26396 T 1 1
152 Albania 26397 T 1 1
153 Albania 26398 G 1 1
154 Albania 26399 T 1 1
155 Albania 26400 A 1 1
156 Albania 26401 A 1 1
157 Albania 26402 A 1 1
158 Albania 26403 A 1 1
159 Albania 26404 C 1 1
160 Albania 26405 C 1 1
161 Albania 26406 T 1 1
162 Albania 26407 T 1 1
163 Albania 26408 C 1 1
164 Albania 26409 T 1 1
165 Albania 26410 T 1 1
166 Albania 26411 T 1 1
167 Albania 26412 T 1 1
168 Albania 26413 T 1 1
169 Albania 26414 A 1 1
170 Albania 26415 C 1 1
171 Albania 26416 G 1 1
172 Albania 26417 T 1 1
173 Albania 26418 T 1 1
174 Albania 26419 T 1 1
175 Albania 26420 A 1 1
176 Albania 26421 C 1 1
177 Albania 26422 T 1 1
178 Albania 26423 C 1 1
179 Albania 26424 T 1 1
180 Albania 26425 C 1 1
181 Albania 26426 G 1 1
182 Albania 26427 T 1 1
183 Albania 26428 G 1 1
184 Albania 26429 T 1 1
185 Albania 26430 T 1 1
186 Albania 26431 A 1 1
187 Albania 26432 A 1 1
188 Albania 26433 A 1 1
189 Albania 26434 A 1 1
190 Albania 26435 A 1 1
191 Albania 26436 T 1 1
192 Albania 26437 C 1 1
193 Albania 26438 T 1 1
194 Albania 26439 G 1 1
195 Albania 26440 A 1 1
196 Albania 26441 A 1 1
197 Albania 26442 T 1 1
198 Albania 26443 T 1 1
199 Albania 26444 C 1 1
200 Albania 26445 T 1 1
201 Albania 26446 T 1 1
202 Albania 26447 C 1 1
203 Albania 26448 T 1 1
204 Albania 26449 A 1 1
205 Albania 26450 G 1 1
206 Albania 26451 A 1 1
207 Albania 26452 G 1 1
208 Albania 26453 T 1 1
209 Albania 26454 T 1 1
210 Albania 26455 C 1 1
211 Albania 26456 C 1 1
212 Albania 26457 T 1 1
213 Albania 26458 G 1 1
214 Albania 26459 A 1 1
215 Albania 26460 T 1 1
216 Albania 26461 C 1 1
217 Albania 26462 T 1 1
218 Albania 26463 T 1 1
219 Albania 26464 C 1 1
220 Albania 26465 T 1 1
221 Albania 26466 G 1 1
222 Albania 26467 G 1 1
223 Albania 26468 T 1 1
224 Albania 26469 C 1 1
225 Albania 26470 T 1 1
226 Albania 26471 A 1 1
227 Albania 26472 A 1 1