National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A D E F H I K L M N P Q R S T V W Y
*     2                                    
-     186                                    
?                                          
A     3                                    
D     12                                    
E     16                                    
F     9                                    
H     3                                    
I     30                                    
K     12                                    
L     24                                    
M     9                                    
N     12                                    
P     3                                    
Q     9                                    
R     3                                    
S     12                                    
T     9                                    
V     9                                    
W     3                                    
Y     6                                    

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Zambia 27202 A 2 2
1 Zambia 27203 T 2 2
2 Zambia 27204 G 2 2
3 Zambia 27205 T 2 2
4 Zambia 27206 T 2 2
5 Zambia 27207 T 2 2
6 Zambia 27208 C 2 2
7 Zambia 27209 A 2 2
8 Zambia 27210 T 2 2
9 Zambia 27211 C 2 2
10 Zambia 27212 T 2 2
11 Zambia 27213 C 2 2
12 Zambia 27214 G 2 2
13 Zambia 27215 T 2 2
14 Zambia 27216 T 2 2
15 Zambia 27217 G 2 2
16 Zambia 27218 A 2 2
17 Zambia 27219 C 2 2
18 Zambia 27220 T 2 2
19 Zambia 27221 T 2 2
20 Zambia 27222 T 2 2
21 Zambia 27223 C 2 2
22 Zambia 27224 A 2 2
23 Zambia 27225 G 2 2
24 Zambia 27226 G 2 2
25 Zambia 27227 T 2 2
26 Zambia 27228 T 2 2
27 Zambia 27229 A 2 2
28 Zambia 27230 C 2 2
29 Zambia 27231 T 2 2
30 Zambia 27232 A 2 2
31 Zambia 27233 T 2 2
32 Zambia 27234 A 2 2
33 Zambia 27235 G 2 2
34 Zambia 27236 C 2 2
35 Zambia 27237 A 2 2
36 Zambia 27238 G 2 2
37 Zambia 27239 A 2 2
38 Zambia 27240 G 2 2
39 Zambia 27241 A 2 2
40 Zambia 27242 T 2 2
41 Zambia 27243 A 2 2
42 Zambia 27244 T 2 2
43 Zambia 27245 T 2 2
44 Zambia 27246 A 2 2
45 Zambia 27247 C 2 2
46 Zambia 27248 T 2 2
47 Zambia 27249 A 2 2
48 Zambia 27250 A 2 2
49 Zambia 27251 T 2 2
50 Zambia 27252 T 2 2
51 Zambia 27253 A 2 2
52 Zambia 27254 T 2 2
53 Zambia 27255 T 2 2
54 Zambia 27256 A 2 2
55 Zambia 27257 T 2 2
56 Zambia 27258 G 2 2
57 Zambia 27259 A 2 2
58 Zambia 27260 G 2 2
59 Zambia 27261 G 2 2
60 Zambia 27262 A 2 2
61 Zambia 27263 C 2 2
62 Zambia 27264 T 2 2
63 Zambia 27265 T 2 2
64 Zambia 27266 T 2 2
65 Zambia 27267 T 2 2
66 Zambia 27268 A 2 2
67 Zambia 27269 A 2 2
68 Zambia 27270 A 2 2
69 Zambia 27271 G 2 2
70 Zambia 27272 T 2 2
71 Zambia 27273 T 2 2
72 Zambia 27274 T 2 2
73 Zambia 27275 C 2 2
74 Zambia 27276 C 2 2
75 Zambia 27277 A 2 2
76 Zambia 27278 T 2 2
77 Zambia 27279 T 2 2
78 Zambia 27280 T 2 2
79 Zambia 27281 G 2 2
80 Zambia 27282 G 2 2
81 Zambia 27283 A 2 2
82 Zambia 27284 A 2 2
83 Zambia 27285 T 2 2
84 Zambia 27286 C 2 2
85 Zambia 27287 T 2 2
86 Zambia 27288 T 2 2
87 Zambia 27289 G 2 2
88 Zambia 27290 A 2 2
89 Zambia 27291 T 2 2
90 Zambia 27292 T 2 2
91 Zambia 27293 A 2 2
92 Zambia 27294 C 2 2
93 Zambia 27295 A 2 2
94 Zambia 27296 T 2 2
95 Zambia 27297 C 2 2
96 Zambia 27298 A 2 2
97 Zambia 27299 T 2 2
98 Zambia 27300 A 2 2
99 Zambia 27301 A 2 2
100 Zambia 27302 A 2 2
101 Zambia 27303 C 2 2
102 Zambia 27304 C 2 2
103 Zambia 27305 T 2 2
104 Zambia 27306 C 2 2
105 Zambia 27307 A 2 2
106 Zambia 27308 T 2 2
107 Zambia 27309 A 2 2
108 Zambia 27310 A 2 2
109 Zambia 27311 T 2 2
110 Zambia 27312 T 2 2
111 Zambia 27313 A 2 2
112 Zambia 27314 A 2 2
113 Zambia 27315 A 2 2
114 Zambia 27316 A 2 2
115 Zambia 27317 A 2 2
116 Zambia 27318 T 2 2
117 Zambia 27319 T 2 2
118 Zambia 27320 T 2 2
119 Zambia 27321 A 2 2
120 Zambia 27322 T 2 2
121 Zambia 27323 C 2 2
122 Zambia 27324 T 2 2
123 Zambia 27325 A 2 2
124 Zambia 27326 A 2 2
125 Zambia 27327 G 2 2
126 Zambia 27328 T 2 2
127 Zambia 27329 C 2 2
128 Zambia 27330 A 2 2
129 Zambia 27331 C 2 2
130 Zambia 27332 T 2 2
131 Zambia 27333 A 2 2
132 Zambia 27334 A 2 2
133 Zambia 27335 C 2 2
134 Zambia 27336 T 2 2
135 Zambia 27337 G 2 2
136 Zambia 27338 A 2 2
137 Zambia 27339 G 2 2
138 Zambia 27340 A 2 2
139 Zambia 27341 A 2 2
140 Zambia 27342 T 2 2
141 Zambia 27343 A 2 2
142 Zambia 27344 A 2 2
143 Zambia 27345 A 2 2
144 Zambia 27346 T 2 2
145 Zambia 27347 A 2 2
146 Zambia 27348 T 2 2
147 Zambia 27349 T 2 2
148 Zambia 27350 C 2 2
149 Zambia 27351 T 2 2
150 Zambia 27352 C 2 2
151 Zambia 27353 A 2 2
152 Zambia 27354 A 2 2
153 Zambia 27355 T 2 2
154 Zambia 27356 T 2 2
155 Zambia 27357 A 2 2
156 Zambia 27358 G 2 2
157 Zambia 27359 A 2 2
158 Zambia 27360 T 2 2
159 Zambia 27361 G 2 2
160 Zambia 27362 A 2 2
161 Zambia 27363 A 2 2
162 Zambia 27364 G 2 2
163 Zambia 27365 A 2 2
164 Zambia 27366 G 2 2
165 Zambia 27367 C 2 2
166 Zambia 27368 A 2 2
167 Zambia 27369 A 2 2
168 Zambia 27370 C 2 2
169 Zambia 27371 C 2 2
170 Zambia 27372 A 2 2
171 Zambia 27373 A 2 2
172 Zambia 27374 T 2 2
173 Zambia 27375 G 2 2
174 Zambia 27376 G 2 2
175 Zambia 27377 A 2 2
176 Zambia 27378 G 2 2
177 Zambia 27379 A 2 2
178 Zambia 27380 T 2 2
179 Zambia 27381 T 2 2
180 Zambia 27382 G 2 2
181 Zambia 27383 A 2 2
182 Zambia 27384 T 2 2
183 Zambia 27385 T 2 2
184 Zambia 27386 A 2 2
185 Zambia 27387 A 2 2