National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A D E F H I K L M N P Q R S T V W Y
*     2                                    
-     186                                    
?                                          
A     3                                    
D     12                                    
E     16                                    
F     9                                    
H     3                                    
I     30                                    
K     12                                    
L     24                                    
M     9                                    
N     12                   1                
P     3                                    
Q     9                                    
R     3                                    
S     12                                    
T     9                                    
V     9                                    
W     3                                    
Y     6                                    

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Vietnam 27202 A 116 116
1 Vietnam 27203 T 116 116
2 Vietnam 27204 G 116 116
3 Vietnam 27205 T 116 116
4 Vietnam 27206 T 116 116
5 Vietnam 27207 T 116 116
6 Vietnam 27208 C 116 116
7 Vietnam 27209 A 116 116
8 Vietnam 27210 T 116 116
9 Vietnam 27211 C 116 116
10 Vietnam 27212 T 116 116
11 Vietnam 27213 C 116 116
12 Vietnam 27214 G 116 116
13 Vietnam 27215 T 116 116
14 Vietnam 27216 T 116 116
15 Vietnam 27217 G 116 116
16 Vietnam 27218 A 116 116
17 Vietnam 27219 C 116 116
18 Vietnam 27220 T 116 116
19 Vietnam 27221 T 116 116
20 Vietnam 27222 T 116 116
21 Vietnam 27223 C 116 116
22 Vietnam 27224 A 116 116
23 Vietnam 27225 G 116 116
24 Vietnam 27226 G 116 116
25 Vietnam 27227 T 116 116
26 Vietnam 27228 T 116 116
27 Vietnam 27229 A 116 116
28 Vietnam 27230 C 116 116
29 Vietnam 27231 T 116 116
30 Vietnam 27232 A 116 116
31 Vietnam 27233 T 116 116
32 Vietnam 27234 A 116 116
33 Vietnam 27235 G 116 116
34 Vietnam 27236 C 116 116
35 Vietnam 27237 A 116 116
36 Vietnam 27238 G 116 116
37 Vietnam 27239 A 116 116
38 Vietnam 27240 G 116 116
39 Vietnam 27241 A 116 116
40 Vietnam 27242 T 116 116
41 Vietnam 27243 A 116 116
42 Vietnam 27244 T 116 116
43 Vietnam 27245 T 116 116
44 Vietnam 27246 A 116 116
45 Vietnam 27247 C 116 116
46 Vietnam 27248 T 116 116
47 Vietnam 27249 A 116 116
48 Vietnam 27250 A 116 116
49 Vietnam 27251 T 116 116
50 Vietnam 27252 T 116 116
51 Vietnam 27253 A 116 116
52 Vietnam 27254 T 116 116
53 Vietnam 27255 T 116 116
54 Vietnam 27256 A 116 116
55 Vietnam 27257 T 116 116
56 Vietnam 27258 G 116 116
57 Vietnam 27259 A 116 116
58 Vietnam 27260 G 116 116
59 Vietnam 27261 G 116 116
60 Vietnam 27262 A 116 116
61 Vietnam 27263 C 116 116
62 Vietnam 27264 T 116 116
63 Vietnam 27265 T 116 116
64 Vietnam 27266 T 116 116
65 Vietnam 27267 T 116 116
66 Vietnam 27268 A 116 116
67 Vietnam 27269 A 116 116
68 Vietnam 27270 A 116 116
69 Vietnam 27271 G 116 116
70 Vietnam 27272 T 116 116
71 Vietnam 27273 T 116 116
72 Vietnam 27274 T 116 116
73 Vietnam 27275 C 116 116
74 Vietnam 27276 C 116 116
75 Vietnam 27277 A 116 116
76 Vietnam 27278 T 116 116
77 Vietnam 27279 T 116 116
78 Vietnam 27280 T 116 116
79 Vietnam 27281 G 116 116
80 Vietnam 27282 G 116 116
81 Vietnam 27283 A 116 116
82 Vietnam 27284 A 116 116
83 Vietnam 27285 T 116 116
84 Vietnam 27286 C 116 116
85 Vietnam 27287 T 116 116
86 Vietnam 27288 T 116 116
87 Vietnam 27289 G 116 116
88 Vietnam 27290 A 116 116
89 Vietnam 27291 T 116 116
90 Vietnam 27292 T 116 116
91 Vietnam 27293 A 116 116
92 Vietnam 27294 C 116 116
93 Vietnam 27295 A 116 116
94 Vietnam 27296 T 116 116
95 Vietnam 27297 C 116 116
96 Vietnam 27298 A 116 116
97 Vietnam 27299 T 116 116
98 Vietnam 27300 A 116 116
99 Vietnam 27301 A 116 116
100 Vietnam 27302 A 116 116
101 Vietnam 27303 C 116 116
102 Vietnam 27304 C 116 116
103 Vietnam 27305 T 116 116
104 Vietnam 27306 C 116 116
105 Vietnam 27307 A 116 116
106 Vietnam 27308 T 116 116
107 Vietnam 27309 A 116 116
108 Vietnam 27310 A 116 116
109 Vietnam 27311 T 116 116
110 Vietnam 27312 T 116 116
111 Vietnam 27313 A 116 116
112 Vietnam 27314 A 116 116
113 Vietnam 27315 A 116 116
114 Vietnam 27316 A 116 116
115 Vietnam 27317 A 116 116
116 Vietnam 27318 T C 116 115 Asn39Asn
117 Vietnam 27319 T 116 116
118 Vietnam 27320 T 116 116
119 Vietnam 27321 A 116 116
120 Vietnam 27322 T 116 116
121 Vietnam 27323 C 116 116
122 Vietnam 27324 T 116 116
123 Vietnam 27325 A 116 116
124 Vietnam 27326 A 116 116
125 Vietnam 27327 G 116 116
126 Vietnam 27328 T 116 116
127 Vietnam 27329 C 116 116
128 Vietnam 27330 A 116 116
129 Vietnam 27331 C 116 116
130 Vietnam 27332 T 116 116
131 Vietnam 27333 A 116 116
132 Vietnam 27334 A 116 116
133 Vietnam 27335 C 116 116
134 Vietnam 27336 T 116 116
135 Vietnam 27337 G 116 116
136 Vietnam 27338 A 116 116
137 Vietnam 27339 G 116 116
138 Vietnam 27340 A 116 116
139 Vietnam 27341 A 116 116
140 Vietnam 27342 T 116 116
141 Vietnam 27343 A 116 116
142 Vietnam 27344 A 116 116
143 Vietnam 27345 A 116 116
144 Vietnam 27346 T 116 116
145 Vietnam 27347 A 116 116
146 Vietnam 27348 T 116 116
147 Vietnam 27349 T 116 116
148 Vietnam 27350 C 116 116
149 Vietnam 27351 T 116 116
150 Vietnam 27352 C 116 116
151 Vietnam 27353 A 116 116
152 Vietnam 27354 A 116 116
153 Vietnam 27355 T 116 116
154 Vietnam 27356 T 116 116
155 Vietnam 27357 A 116 116
156 Vietnam 27358 G 116 116
157 Vietnam 27359 A 116 116
158 Vietnam 27360 T 116 116
159 Vietnam 27361 G 116 116
160 Vietnam 27362 A 116 116
161 Vietnam 27363 A 116 116
162 Vietnam 27364 G 116 116
163 Vietnam 27365 A 116 116
164 Vietnam 27366 G 116 116
165 Vietnam 27367 C 116 116
166 Vietnam 27368 A 116 116
167 Vietnam 27369 A 116 116
168 Vietnam 27370 C 116 116
169 Vietnam 27371 C 116 116
170 Vietnam 27372 A 116 116
171 Vietnam 27373 A 116 116
172 Vietnam 27374 T 116 116
173 Vietnam 27375 G 116 116
174 Vietnam 27376 G 116 116
175 Vietnam 27377 A 116 116
176 Vietnam 27378 G 116 116
177 Vietnam 27379 A 116 116
178 Vietnam 27380 T 116 116
179 Vietnam 27381 T 116 116
180 Vietnam 27382 G 116 116
181 Vietnam 27383 A 116 116
182 Vietnam 27384 T 116 116
183 Vietnam 27385 T 116 116
184 Vietnam 27386 A 116 116
185 Vietnam 27387 A 116 116