National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A D E F H I K L M N P Q R S T V W Y
*     2                                    
-     186                                    
?                                          
A     3                                    
D     12                                    
E     16                                    
F     9                                    
H     3                                    
I     30                                    
K     12                                    
L     24                                    
M     9                                    
N     12                                    
P     3                                    
Q     9                                    
R     3                                    
S     12                                    
T     9                                    
V     9                                    
W     3                                    
Y     6                                    

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Uzbekistan 27202 A <*> 2 2
1 Uzbekistan 27203 T <*> 2 2
2 Uzbekistan 27204 G <*> 2 2
3 Uzbekistan 27205 T <*> 2 2
4 Uzbekistan 27206 T <*> 2 2
5 Uzbekistan 27207 T <*> 2 2
6 Uzbekistan 27208 C <*> 2 2
7 Uzbekistan 27209 A <*> 2 2
8 Uzbekistan 27210 T <*> 2 2
9 Uzbekistan 27211 C <*> 2 2
10 Uzbekistan 27212 T <*> 2 2
11 Uzbekistan 27213 C <*> 2 2
12 Uzbekistan 27214 G <*> 2 2
13 Uzbekistan 27215 T <*> 2 2
14 Uzbekistan 27216 T <*> 2 2
15 Uzbekistan 27217 G <*> 2 2
16 Uzbekistan 27218 A <*> 2 2
17 Uzbekistan 27219 C <*> 2 2
18 Uzbekistan 27220 T <*> 2 2
19 Uzbekistan 27221 T <*> 2 2
20 Uzbekistan 27222 T <*> 2 2
21 Uzbekistan 27223 C <*> 2 2
22 Uzbekistan 27224 A <*> 2 2
23 Uzbekistan 27225 G <*> 2 2
24 Uzbekistan 27226 G <*> 2 2
25 Uzbekistan 27227 T <*> 2 2
26 Uzbekistan 27228 T <*> 2 2
27 Uzbekistan 27229 A <*> 2 2
28 Uzbekistan 27230 C <*> 2 2
29 Uzbekistan 27231 T <*> 2 2
30 Uzbekistan 27232 A <*> 2 2
31 Uzbekistan 27233 T <*> 2 2
32 Uzbekistan 27234 A <*> 2 2
33 Uzbekistan 27235 G <*> 2 2
34 Uzbekistan 27236 C <*> 2 2
35 Uzbekistan 27237 A <*> 2 2
36 Uzbekistan 27238 G <*> 2 2
37 Uzbekistan 27239 A <*> 2 2
38 Uzbekistan 27240 G <*> 2 2
39 Uzbekistan 27241 A <*> 2 2
40 Uzbekistan 27242 T <*> 2 2
41 Uzbekistan 27243 A <*> 2 2
42 Uzbekistan 27244 T <*> 2 2
43 Uzbekistan 27245 T <*> 2 2
44 Uzbekistan 27246 A <*> 2 2
45 Uzbekistan 27247 C <*> 2 2
46 Uzbekistan 27248 T <*> 2 2
47 Uzbekistan 27249 A <*> 2 2
48 Uzbekistan 27250 A <*> 2 2
49 Uzbekistan 27251 T <*> 2 2
50 Uzbekistan 27252 T <*> 2 2
51 Uzbekistan 27253 A <*> 2 2
52 Uzbekistan 27254 T <*> 2 2
53 Uzbekistan 27255 T <*> 2 2
54 Uzbekistan 27256 A <*> 2 2
55 Uzbekistan 27257 T <*> 2 2
56 Uzbekistan 27258 G <*> 2 2
57 Uzbekistan 27259 A <*> 2 2
58 Uzbekistan 27260 G <*> 2 2
59 Uzbekistan 27261 G <*> 2 2
60 Uzbekistan 27262 A <*> 2 2
61 Uzbekistan 27263 C <*> 2 2
62 Uzbekistan 27264 T <*> 2 2
63 Uzbekistan 27265 T <*> 2 2
64 Uzbekistan 27266 T <*> 2 2
65 Uzbekistan 27267 T <*> 2 2
66 Uzbekistan 27268 A <*> 2 2
67 Uzbekistan 27269 A <*> 2 2
68 Uzbekistan 27270 A <*> 2 2
69 Uzbekistan 27271 G <*> 2 2
70 Uzbekistan 27272 T <*> 2 2
71 Uzbekistan 27273 T <*> 2 2
72 Uzbekistan 27274 T <*> 2 2
73 Uzbekistan 27275 C <*> 2 2
74 Uzbekistan 27276 C <*> 2 2
75 Uzbekistan 27277 A <*> 2 2
76 Uzbekistan 27278 T <*> 2 2
77 Uzbekistan 27279 T <*> 2 2
78 Uzbekistan 27280 T <*> 2 2
79 Uzbekistan 27281 G <*> 2 2
80 Uzbekistan 27282 G <*> 2 2
81 Uzbekistan 27283 A <*> 2 2
82 Uzbekistan 27284 A <*> 2 2
83 Uzbekistan 27285 T <*> 2 2
84 Uzbekistan 27286 C <*> 2 2
85 Uzbekistan 27287 T <*> 2 2
86 Uzbekistan 27288 T <*> 2 2
87 Uzbekistan 27289 G <*> 2 2
88 Uzbekistan 27290 A <*> 2 2
89 Uzbekistan 27291 T <*> 2 2
90 Uzbekistan 27292 T <*> 2 2
91 Uzbekistan 27293 A <*> 2 2
92 Uzbekistan 27294 C <*> 2 2
93 Uzbekistan 27295 A <*> 2 2
94 Uzbekistan 27296 T <*> 2 2
95 Uzbekistan 27297 C <*> 2 2
96 Uzbekistan 27298 A <*> 2 2
97 Uzbekistan 27299 T <*> 2 2
98 Uzbekistan 27300 A <*> 2 2
99 Uzbekistan 27301 A <*> 2 2
100 Uzbekistan 27302 A <*> 2 2
101 Uzbekistan 27303 C <*> 2 2
102 Uzbekistan 27304 C <*> 2 2
103 Uzbekistan 27305 T <*> 2 2
104 Uzbekistan 27306 C <*> 2 2
105 Uzbekistan 27307 A <*> 2 2
106 Uzbekistan 27308 T <*> 2 2
107 Uzbekistan 27309 A <*> 2 2
108 Uzbekistan 27310 A <*> 2 2
109 Uzbekistan 27311 T <*> 2 2
110 Uzbekistan 27312 T <*> 2 2
111 Uzbekistan 27313 A <*> 2 2
112 Uzbekistan 27314 A <*> 2 2
113 Uzbekistan 27315 A <*> 2 2
114 Uzbekistan 27316 A <*> 2 2
115 Uzbekistan 27317 A <*> 2 2
116 Uzbekistan 27318 T <*> 2 2
117 Uzbekistan 27319 T <*> 2 2
118 Uzbekistan 27320 T <*> 2 2
119 Uzbekistan 27321 A <*> 2 2
120 Uzbekistan 27322 T <*> 2 2
121 Uzbekistan 27323 C <*> 2 2
122 Uzbekistan 27324 T <*> 2 2
123 Uzbekistan 27325 A <*> 2 2
124 Uzbekistan 27326 A <*> 2 2
125 Uzbekistan 27327 G <*> 2 2
126 Uzbekistan 27328 T <*> 2 2
127 Uzbekistan 27329 C <*> 2 2
128 Uzbekistan 27330 A <*> 2 2
129 Uzbekistan 27331 C <*> 2 2
130 Uzbekistan 27332 T <*> 2 2
131 Uzbekistan 27333 A <*> 2 2
132 Uzbekistan 27334 A <*> 2 2
133 Uzbekistan 27335 C <*> 2 2
134 Uzbekistan 27336 T <*> 2 2
135 Uzbekistan 27337 G <*> 2 2
136 Uzbekistan 27338 A <*> 2 2
137 Uzbekistan 27339 G <*> 2 2
138 Uzbekistan 27340 A <*> 2 2
139 Uzbekistan 27341 A <*> 2 2
140 Uzbekistan 27342 T <*> 2 2
141 Uzbekistan 27343 A <*> 2 2
142 Uzbekistan 27344 A <*> 2 2
143 Uzbekistan 27345 A <*> 2 2
144 Uzbekistan 27346 T <*> 2 2
145 Uzbekistan 27347 A <*> 2 2
146 Uzbekistan 27348 T <*> 2 2
147 Uzbekistan 27349 T <*> 2 2
148 Uzbekistan 27350 C <*> 2 2
149 Uzbekistan 27351 T <*> 2 2
150 Uzbekistan 27352 C <*> 2 2
151 Uzbekistan 27353 A <*> 2 2
152 Uzbekistan 27354 A <*> 2 2
153 Uzbekistan 27355 T <*> 2 2
154 Uzbekistan 27356 T <*> 2 2
155 Uzbekistan 27357 A <*> 2 2
156 Uzbekistan 27358 G <*> 2 2
157 Uzbekistan 27359 A <*> 2 2
158 Uzbekistan 27360 T <*> 2 2
159 Uzbekistan 27361 G <*> 2 2
160 Uzbekistan 27362 A <*> 2 2
161 Uzbekistan 27363 A <*> 2 2
162 Uzbekistan 27364 G <*> 2 2
163 Uzbekistan 27365 A <*> 2 2
164 Uzbekistan 27366 G <*> 2 2
165 Uzbekistan 27367 C <*> 2 2
166 Uzbekistan 27368 A <*> 2 2
167 Uzbekistan 27369 A <*> 2 2
168 Uzbekistan 27370 C <*> 2 2
169 Uzbekistan 27371 C <*> 2 2
170 Uzbekistan 27372 A <*> 2 2
171 Uzbekistan 27373 A <*> 2 2
172 Uzbekistan 27374 T <*> 2 2
173 Uzbekistan 27375 G <*> 2 2
174 Uzbekistan 27376 G <*> 2 2
175 Uzbekistan 27377 A <*> 2 2
176 Uzbekistan 27378 G <*> 2 2
177 Uzbekistan 27379 A <*> 2 2
178 Uzbekistan 27380 T <*> 2 2
179 Uzbekistan 27381 T <*> 2 2
180 Uzbekistan 27382 G <*> 2 2
181 Uzbekistan 27383 A <*> 2 2
182 Uzbekistan 27384 T <*> 2 2
183 Uzbekistan 27385 T <*> 2 2
184 Uzbekistan 27386 A <*> 2 2
185 Uzbekistan 27387 A <*> 2 2