National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A D E F H I K L M N P Q R S T V W Y
*     2                                    
-     186                                    
?                                          
A     3                             1      
D     12   1     1                          
E 1   16     1                              
F     9                           2        
H     3   1                                
I     30                             2      
K     12                                    
L     24           1   2           1        
M     9                                    
N     12                                    
P     3               1                    
Q     9                                    
R     3                                    
S     12                                    
T     9                   1                
V     9       1                       1    
W     3                                    
Y     6         1                         1

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 United_Arab_Emirates 27202 A 1842 1842
1 United_Arab_Emirates 27203 T 1842 1842
2 United_Arab_Emirates 27204 G 1842 1842
3 United_Arab_Emirates 27205 T 1842 1842
4 United_Arab_Emirates 27206 T C 1842 1841 Phe2Ser
5 United_Arab_Emirates 27207 T 1842 1842
6 United_Arab_Emirates 27208 C G 1842 1839 His3Asp
7 United_Arab_Emirates 27209 A 1842 1842
8 United_Arab_Emirates 27210 T 1842 1842
9 United_Arab_Emirates 27211 C 1842 1842
10 United_Arab_Emirates 27212 T 1842 1842
11 United_Arab_Emirates 27213 C T 1842 1838 Leu4Leu
12 United_Arab_Emirates 27214 G T 1842 1838 Val5Phe
13 United_Arab_Emirates 27215 T 1842 1842
14 United_Arab_Emirates 27216 T 1842 1842
15 United_Arab_Emirates 27217 G 1842 1842
16 United_Arab_Emirates 27218 A 1843 1843
17 United_Arab_Emirates 27219 C 1843 1843
18 United_Arab_Emirates 27220 T 1843 1843
19 United_Arab_Emirates 27221 T C 1843 1842 Phe7Ser
20 United_Arab_Emirates 27222 T 1843 1843
21 United_Arab_Emirates 27223 C 1843 1843
22 United_Arab_Emirates 27224 A 1843 1843
23 United_Arab_Emirates 27225 G 1843 1843
24 United_Arab_Emirates 27226 G 1843 1843
25 United_Arab_Emirates 27227 T 1843 1843
26 United_Arab_Emirates 27228 T C 1843 1842 Val9Val
27 United_Arab_Emirates 27229 A 1843 1843
28 United_Arab_Emirates 27230 C 1843 1843
29 United_Arab_Emirates 27231 T 1843 1843
30 United_Arab_Emirates 27232 A 1843 1843
31 United_Arab_Emirates 27233 T 1843 1843
32 United_Arab_Emirates 27234 A 1843 1843
33 United_Arab_Emirates 27235 G A 1843 1842 Ala12Thr
34 United_Arab_Emirates 27236 C 1843 1843
35 United_Arab_Emirates 27237 A 1843 1843
36 United_Arab_Emirates 27238 G 1843 1843
37 United_Arab_Emirates 27239 A 1843 1843
38 United_Arab_Emirates 27240 G A 1843 1842 Glu13Glu
39 United_Arab_Emirates 27241 A 1843 1843
40 United_Arab_Emirates 27242 T C 1843 1842 Ile14Thr
41 United_Arab_Emirates 27243 A 1843 1843
42 United_Arab_Emirates 27244 T 1843 1843
43 United_Arab_Emirates 27245 T 1843 1843
44 United_Arab_Emirates 27246 A 1843 1843
45 United_Arab_Emirates 27247 C T 1843 1840 Leu16Leu
46 United_Arab_Emirates 27248 T 1843 1843
47 United_Arab_Emirates 27249 A 1843 1843
48 United_Arab_Emirates 27250 A 1843 1843
49 United_Arab_Emirates 27251 T 1843 1843
50 United_Arab_Emirates 27252 T 1843 1843
51 United_Arab_Emirates 27253 A 1843 1843
52 United_Arab_Emirates 27254 T 1843 1843
53 United_Arab_Emirates 27255 T 1843 1843
54 United_Arab_Emirates 27256 A 1843 1843
55 United_Arab_Emirates 27257 T 1843 1843
56 United_Arab_Emirates 27258 G 1843 1843
57 United_Arab_Emirates 27259 A 1843 1843
58 United_Arab_Emirates 27260 G 1843 1843
59 United_Arab_Emirates 27261 G 1843 1843
60 United_Arab_Emirates 27262 A 1841 1841
61 United_Arab_Emirates 27263 C 1841 1841
62 United_Arab_Emirates 27264 T 1841 1841
63 United_Arab_Emirates 27265 T 1841 1841
64 United_Arab_Emirates 27266 T 1841 1841
65 United_Arab_Emirates 27267 T 1841 1841
66 United_Arab_Emirates 27268 A 1841 1841
67 United_Arab_Emirates 27269 A 1841 1841
68 United_Arab_Emirates 27270 A 1841 1841
69 United_Arab_Emirates 27271 G 1841 1841
70 United_Arab_Emirates 27272 T 1841 1841
71 United_Arab_Emirates 27273 T 1841 1841
72 United_Arab_Emirates 27274 T 1841 1841
73 United_Arab_Emirates 27275 C 1841 1841
74 United_Arab_Emirates 27276 C 1841 1841
75 United_Arab_Emirates 27277 A 1841 1841
76 United_Arab_Emirates 27278 T 1841 1841
77 United_Arab_Emirates 27279 T 1841 1841
78 United_Arab_Emirates 27280 T 1841 1841
79 United_Arab_Emirates 27281 G 1841 1841
80 United_Arab_Emirates 27282 G 1841 1841
81 United_Arab_Emirates 27283 A 1841 1841
82 United_Arab_Emirates 27284 A 1841 1841
83 United_Arab_Emirates 27285 T 1841 1841
84 United_Arab_Emirates 27286 C 1841 1841
85 United_Arab_Emirates 27287 T 1841 1841
86 United_Arab_Emirates 27288 T 1841 1841
87 United_Arab_Emirates 27289 G C 1841 1840 Asp30His
88 United_Arab_Emirates 27290 A 1841 1841
89 United_Arab_Emirates 27291 T 1841 1841
90 United_Arab_Emirates 27292 T 1841 1841
91 United_Arab_Emirates 27293 A 1841 1841
92 United_Arab_Emirates 27294 C T 1841 1836 Tyr31Tyr
93 United_Arab_Emirates 27295 A 1841 1841
94 United_Arab_Emirates 27296 T 1841 1841
95 United_Arab_Emirates 27297 C 1841 1841
96 United_Arab_Emirates 27298 A 1841 1841
97 United_Arab_Emirates 27299 T C 1841 1835 Ile33Thr
98 United_Arab_Emirates 27300 A 1841 1841
99 United_Arab_Emirates 27301 A 1841 1841
100 United_Arab_Emirates 27302 A 1841 1841
101 United_Arab_Emirates 27303 C 1841 1841
102 United_Arab_Emirates 27304 C A 1841 1836 Leu35Ile
103 United_Arab_Emirates 27305 T 1841 1841
104 United_Arab_Emirates 27306 C 1841 1841
105 United_Arab_Emirates 27307 A 1841 1841
106 United_Arab_Emirates 27308 T 1841 1841
107 United_Arab_Emirates 27309 A 1841 1841
108 United_Arab_Emirates 27310 A 1841 1841
109 United_Arab_Emirates 27311 T 1841 1841
110 United_Arab_Emirates 27312 T 1841 1841
111 United_Arab_Emirates 27313 A 1841 1841
112 United_Arab_Emirates 27314 A 1841 1841
113 United_Arab_Emirates 27315 A 1841 1841
114 United_Arab_Emirates 27316 A 1841 1841
115 United_Arab_Emirates 27317 A 1841 1841
116 United_Arab_Emirates 27318 T 1841 1841
117 United_Arab_Emirates 27319 T 1841 1841
118 United_Arab_Emirates 27320 T 1841 1841
119 United_Arab_Emirates 27321 A 1841 1841
120 United_Arab_Emirates 27322 T 1843 1843
121 United_Arab_Emirates 27323 C 1843 1843
122 United_Arab_Emirates 27324 T 1843 1843
123 United_Arab_Emirates 27325 A 1843 1843
124 United_Arab_Emirates 27326 A 1843 1843
125 United_Arab_Emirates 27327 G 1843 1843
126 United_Arab_Emirates 27328 T 1843 1843
127 United_Arab_Emirates 27329 C 1843 1843
128 United_Arab_Emirates 27330 A 1843 1843
129 United_Arab_Emirates 27331 C 1843 1843
130 United_Arab_Emirates 27332 T 1843 1843
131 United_Arab_Emirates 27333 A 1843 1843
132 United_Arab_Emirates 27334 A 1843 1843
133 United_Arab_Emirates 27335 C A 1843 1842 Thr45Asn
134 United_Arab_Emirates 27336 T 1843 1843
135 United_Arab_Emirates 27337 G 1843 1843
136 United_Arab_Emirates 27338 A 1843 1843
137 United_Arab_Emirates 27339 G 1843 1843
138 United_Arab_Emirates 27340 A 1843 1843
139 United_Arab_Emirates 27341 A 1843 1843
140 United_Arab_Emirates 27342 T 1843 1843
141 United_Arab_Emirates 27343 A 1843 1843
142 United_Arab_Emirates 27344 A 1843 1843
143 United_Arab_Emirates 27345 A 1843 1843
144 United_Arab_Emirates 27346 T C 1843 1839 Tyr49His
145 United_Arab_Emirates 27347 A 1843 1843
146 United_Arab_Emirates 27348 T 1843 1843
147 United_Arab_Emirates 27349 T 1843 1843
148 United_Arab_Emirates 27350 C 1843 1843
149 United_Arab_Emirates 27351 T 1843 1843
150 United_Arab_Emirates 27352 C 1843 1843
151 United_Arab_Emirates 27353 A 1843 1843
152 United_Arab_Emirates 27354 A 1843 1843
153 United_Arab_Emirates 27355 T 1843 1843
154 United_Arab_Emirates 27356 T C 1843 1842 Leu52Ser
155 United_Arab_Emirates 27357 A 1843 1843
156 United_Arab_Emirates 27358 G 1843 1843
157 United_Arab_Emirates 27359 A 1843 1843
158 United_Arab_Emirates 27360 T 1843 1843
159 United_Arab_Emirates 27361 G 1843 1843
160 United_Arab_Emirates 27362 A 1843 1843
161 United_Arab_Emirates 27363 A 1842 1842
162 United_Arab_Emirates 27364 G T 1842 1841 Glu55*
163 United_Arab_Emirates 27365 A 1842 1842
164 United_Arab_Emirates 27366 G 1842 1842
165 United_Arab_Emirates 27367 C 1842 1842
166 United_Arab_Emirates 27368 A 1842 1842
167 United_Arab_Emirates 27369 A 1842 1842
168 United_Arab_Emirates 27370 C 1842 1842
169 United_Arab_Emirates 27371 C T 1842 1830 Pro57Leu
170 United_Arab_Emirates 27372 A 1842 1842
171 United_Arab_Emirates 27373 A 1842 1842
172 United_Arab_Emirates 27374 T 1842 1842
173 United_Arab_Emirates 27375 G 1842 1842
174 United_Arab_Emirates 27376 G 1842 1842
175 United_Arab_Emirates 27377 A 1842 1842
176 United_Arab_Emirates 27378 G 1842 1842
177 United_Arab_Emirates 27379 A 1842 1842
178 United_Arab_Emirates 27380 T 1842 1842
179 United_Arab_Emirates 27381 T 1842 1842
180 United_Arab_Emirates 27382 G 1841 1841
181 United_Arab_Emirates 27383 A 1841 1841
182 United_Arab_Emirates 27384 T C 1841 1839 Asp61Asp
183 United_Arab_Emirates 27385 T 1841 1841
184 United_Arab_Emirates 27386 A 1841 1841
185 United_Arab_Emirates 27387 A 1841 1841