National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A D E F H I K L M N P Q R S T V W Y
*     2                                    
-     186                                    
?                                          
A     3                                    
D     12                   1                
E     16                                    
F     9                                    
H     3                                    
I     30                                    
K     12                                    
L     24               2                    
M     9           1                        
N     12                                    
P     3                                    
Q     9                       1            
R     3                                    
S     12                                    
T     9                                    
V     9                                    
W     3                                    
Y     6                                   1

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Turkey 27202 A 481 481
1 Turkey 27203 T 482 482
2 Turkey 27204 G T 482 481 Met1?
3 Turkey 27205 T 482 482
4 Turkey 27206 T 482 482
5 Turkey 27207 T 482 482
6 Turkey 27208 C 482 482
7 Turkey 27209 A 482 482
8 Turkey 27210 T 482 482
9 Turkey 27211 C 482 482
10 Turkey 27212 T 482 482
11 Turkey 27213 C T 482 481 Leu4Leu
12 Turkey 27214 G 482 481
13 Turkey 27215 T 482 482
14 Turkey 27216 T 482 482
15 Turkey 27217 G A 482 481 Asp6Asn
16 Turkey 27218 A 482 482
17 Turkey 27219 C 482 482
18 Turkey 27220 T 482 482
19 Turkey 27221 T 482 482
20 Turkey 27222 T 483 483
21 Turkey 27223 C 483 483
22 Turkey 27224 A 483 483
23 Turkey 27225 G 483 483
24 Turkey 27226 G 483 483
25 Turkey 27227 T 483 483
26 Turkey 27228 T 483 483
27 Turkey 27229 A 483 483
28 Turkey 27230 C 483 483
29 Turkey 27231 T 483 483
30 Turkey 27232 A 483 483
31 Turkey 27233 T 483 483
32 Turkey 27234 A 483 483
33 Turkey 27235 G 483 483
34 Turkey 27236 C 483 483
35 Turkey 27237 A 483 483
36 Turkey 27238 G 483 483
37 Turkey 27239 A 483 483
38 Turkey 27240 G 483 483
39 Turkey 27241 A 483 483
40 Turkey 27242 T 483 483
41 Turkey 27243 A 483 483
42 Turkey 27244 T 483 483
43 Turkey 27245 T 483 482
44 Turkey 27246 A 484 482
45 Turkey 27247 C 484 482
46 Turkey 27248 T 484 482
47 Turkey 27249 A 484 482
48 Turkey 27250 A 484 482
49 Turkey 27251 T 484 482
50 Turkey 27252 T 484 482
51 Turkey 27253 A 484 482
52 Turkey 27254 T 484 482
53 Turkey 27255 T 484 482
54 Turkey 27256 A 484 482
55 Turkey 27257 T 484 482
56 Turkey 27258 G 484 482
57 Turkey 27259 A 484 482
58 Turkey 27260 G 484 482
59 Turkey 27261 G 484 482
60 Turkey 27262 A 484 482
61 Turkey 27263 C 484 482
62 Turkey 27264 T 484 482
63 Turkey 27265 T 484 482
64 Turkey 27266 T 484 482
65 Turkey 27267 T 484 482
66 Turkey 27268 A 484 482
67 Turkey 27269 A 484 482
68 Turkey 27270 A 484 482
69 Turkey 27271 G 484 482
70 Turkey 27272 T 484 482
71 Turkey 27273 T 484 482
72 Turkey 27274 T 484 482
73 Turkey 27275 C 484 482
74 Turkey 27276 C 484 482
75 Turkey 27277 A 484 482
76 Turkey 27278 T 484 482
77 Turkey 27279 T 484 482
78 Turkey 27280 T 484 482
79 Turkey 27281 G 485 483
80 Turkey 27282 G 485 484
81 Turkey 27283 A 485 485
82 Turkey 27284 A 485 485
83 Turkey 27285 T 485 485
84 Turkey 27286 C 485 485
85 Turkey 27287 T 485 485
86 Turkey 27288 T C 485 484 Leu29Leu
87 Turkey 27289 G 485 485
88 Turkey 27290 A 485 485
89 Turkey 27291 T 485 485
90 Turkey 27292 T 485 485
91 Turkey 27293 A 485 485
92 Turkey 27294 C T 485 484 Tyr31Tyr
93 Turkey 27295 A 485 485
94 Turkey 27296 T 485 485
95 Turkey 27297 C 485 485
96 Turkey 27298 A 485 485
97 Turkey 27299 T 485 485
98 Turkey 27300 A 485 485
99 Turkey 27301 A 485 485
100 Turkey 27302 A 485 485
101 Turkey 27303 C 485 485
102 Turkey 27304 C 485 485
103 Turkey 27305 T 485 485
104 Turkey 27306 C 485 485
105 Turkey 27307 A 485 485
106 Turkey 27308 T 485 484
107 Turkey 27309 A 485 484
108 Turkey 27310 A 485 484
109 Turkey 27311 T 485 484
110 Turkey 27312 T 485 484
111 Turkey 27313 A 489 488
112 Turkey 27314 A 489 488
113 Turkey 27315 A 490 490
114 Turkey 27316 A 490 490
115 Turkey 27317 A 490 490
116 Turkey 27318 T 490 490
117 Turkey 27319 T 490 490
118 Turkey 27320 T 490 490
119 Turkey 27321 A 490 490
120 Turkey 27322 T 490 490
121 Turkey 27323 C 490 490
122 Turkey 27324 T 490 490
123 Turkey 27325 A 490 490
124 Turkey 27326 A 490 490
125 Turkey 27327 G 490 490
126 Turkey 27328 T 490 490
127 Turkey 27329 C 490 490
128 Turkey 27330 A 490 490
129 Turkey 27331 C 490 490
130 Turkey 27332 T 490 490
131 Turkey 27333 A 490 490
132 Turkey 27334 A 490 490
133 Turkey 27335 C 490 490
134 Turkey 27336 T 490 490
135 Turkey 27337 G 490 490
136 Turkey 27338 A 490 490
137 Turkey 27339 G 490 490
138 Turkey 27340 A 490 490
139 Turkey 27341 A 490 490
140 Turkey 27342 T 490 490
141 Turkey 27343 A 490 490
142 Turkey 27344 A 490 490
143 Turkey 27345 A 490 490
144 Turkey 27346 T 490 490
145 Turkey 27347 A 490 490
146 Turkey 27348 T 490 490
147 Turkey 27349 T 490 490
148 Turkey 27350 C 490 490
149 Turkey 27351 T 490 490
150 Turkey 27352 C 490 490
151 Turkey 27353 A 490 490
152 Turkey 27354 A G 490 489 Gln51Gln
153 Turkey 27355 T 490 490
154 Turkey 27356 T 490 490
155 Turkey 27357 A 490 490
156 Turkey 27358 G 490 490
157 Turkey 27359 A 490 490
158 Turkey 27360 T 490 490
159 Turkey 27361 G 490 490
160 Turkey 27362 A 490 490
161 Turkey 27363 A 490 490
162 Turkey 27364 G 490 490
163 Turkey 27365 A 490 490
164 Turkey 27366 G 490 490
165 Turkey 27367 C 490 490
166 Turkey 27368 A 490 490
167 Turkey 27369 A 490 490
168 Turkey 27370 C 490 490
169 Turkey 27371 C 490 490
170 Turkey 27372 A 490 490
171 Turkey 27373 A 490 490
172 Turkey 27374 T 490 490
173 Turkey 27375 G 490 490
174 Turkey 27376 G 490 490
175 Turkey 27377 A 490 490
176 Turkey 27378 G 490 490
177 Turkey 27379 A 490 490
178 Turkey 27380 T 490 490
179 Turkey 27381 T 490 490
180 Turkey 27382 G 489 489
181 Turkey 27383 A 489 489
182 Turkey 27384 T 489 489
183 Turkey 27385 T 489 489
184 Turkey 27386 A 489 489
185 Turkey 27387 A 489 489